mRNA_E-siliculosus-1a_F_contig109.616.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig109.616.1 vs. uniprot
Match: D7FKV0_ECTSI (Ferredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKV0_ECTSI) HSP 1 Score: 332 bits (852), Expect = 1.410e-111 Identity = 166/171 (97.08%), Postives = 168/171 (98.25%), Query Frame = 1 Query: 49 MRVARIAIGGVCMLDLTSGFVFPAPAVSTCTRARMSSSPLRAANEVKVTVEGVARTVALEEGVSILDGLEAHDIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPEISARGFVLTCSSTVAGPGVELELGVGDKMYEAQYGELVQGHNDAQEAKPGKWNLPFPDVSGA 561 MRV RIAIGG+CMLDLTSGFVFPAPAVSTC RARMSSSPLRAAN+VKVTVEGV RTVALEEGVSILDGLEAHDIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPEISARGFVLTCSSTVAGPGVELELGVGDKMYEAQYGELVQGHNDAQEAKPGKWNLPFPDVSGA Sbjct: 1 MRVVRIAIGGLCMLDLTSGFVFPAPAVSTCRRARMSSSPLRAANDVKVTVEGVVRTVALEEGVSILDGLEAHDIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPEISARGFVLTCSSTVAGPGVELELGVGDKMYEAQYGELVQGHNDAQEAKPGKWNLPFPDVSGA 171
BLAST of mRNA_E-siliculosus-1a_F_contig109.616.1 vs. uniprot
Match: A0A6H5K0E4_9PHAE (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E4_9PHAE) HSP 1 Score: 160 bits (404), Expect = 6.380e-45 Identity = 81/87 (93.10%), Postives = 83/87 (95.40%), Query Frame = 1 Query: 49 MRVARIAIGGVCMLDLTSGFVFPAPAVSTCTRARMSSSPLRAANEVKVTVEGVARTVALEEGVSILDGLEAHDIDAPHSCRSGLCTE 309 MRVA IAIGG+CMLDLTSGFVFPAPAVSTC RARMSSS LRAAN+VKVTVEGV RTVALEEGVSILDGLEAHDIDAPHSCRSGLCTE Sbjct: 1 MRVAHIAIGGLCMLDLTSGFVFPAPAVSTCRRARMSSSRLRAANDVKVTVEGVVRTVALEEGVSILDGLEAHDIDAPHSCRSGLCTE 87
BLAST of mRNA_E-siliculosus-1a_F_contig109.616.1 vs. uniprot
Match: A0A7S1NQA7_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NQA7_9EUGL) HSP 1 Score: 117 bits (292), Expect = 1.530e-28 Identity = 51/102 (50.00%), Postives = 74/102 (72.55%), Query Frame = 1 Query: 211 RTVALEEGVSILDGLEAHDIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPEISARGFVLTCSSTVAGPGVELELGVGDKMYEAQYGELVQGHNDAQEA 516 +T+ + + ++LD +EA IDAPHSCR+GLCTECA VT+ LD++ L+A V G+VLTC++ V GPGVE+ LG+GD+MY++Q+G+ +GH D Q A Sbjct: 2 QTILVPKSETLLDAMEAAGIDAPHSCRTGLCTECAGRVTSGLDSIDLQACVTQDSTFNEGYVLTCAANVTGPGVEITLGMGDEMYDSQFGDFRKGHEDMQSA 103
BLAST of mRNA_E-siliculosus-1a_F_contig109.616.1 vs. uniprot
Match: A0A4D9D796_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D796_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 2.470e-17 Identity = 47/113 (41.59%), Postives = 68/113 (60.18%), Query Frame = 1 Query: 181 EVKVTVEGVARTVALEEGVSILDGLEAHDIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPEISARGFVLTCSSTVAGPGVELELGVGDKMYEAQYGELVQGHNDAQEAK 519 +VK+T +G + + + E IL+ E + D P SCR+G+CT CA V AN D+ K L E S GFVLTC + GPG+E+ELG+ D +YE+QYG+ + Q++K Sbjct: 56 DVKMTYKGETKVLTVSEDTCILEAAEK-EWDVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKKATTEQKSK 167
BLAST of mRNA_E-siliculosus-1a_F_contig109.616.1 vs. uniprot
Match: A0A7S2XX00_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX00_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 2.560e-15 Identity = 43/113 (38.05%), Postives = 65/113 (57.52%), Query Frame = 1 Query: 181 EVKVTVEGVARTVALEEGVSILDGLEAHDIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPEISARGFVLTCSSTVAGPGVELELGVGDKMYEAQYGELVQGHNDAQEAK 519 +V +T G + + + E +IL+ E D P SCR+G+CT CAAMVT +++ L L E +G+ L C S GPG+++ELG D++YE QYG+ + N +E K Sbjct: 24 DVSITFNGETKVITVPEDQNILEASEELFGDVPCSCRNGICTTCAAMVTGGEESLTLAVHGLSAEQREKGYTLCCQSYATGPGLKVELGKYDEVYEDQYGKYER--NQQEEKK 134
BLAST of mRNA_E-siliculosus-1a_F_contig109.616.1 vs. uniprot
Match: G8S8B7_ACTS5 (Phenylacetic acid degradation NADH oxidoreductase n=4 Tax=Actinoplanes TaxID=1865 RepID=G8S8B7_ACTS5) HSP 1 Score: 65.1 bits (157), Expect = 5.610e-8 Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 1 Query: 178 NEVKVTVEGVARTVALEEGVSILDGLEAHDIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPEISARGFVLTCSSTVAGPGVELE 441 +E+ V ++G A TV +E+GV++LDG++ D P +C+ G+C C A V ++ A+ D E++A GFVLTC ST P V ++ Sbjct: 259 SEITVHLDGRATTVTVEQGVTLLDGVQRARPDLPFACKGGVCGTCRARVIEGDVAMRRNFALEDAELAA-GFVLTCQSTATSPKVVVD 345
BLAST of mRNA_E-siliculosus-1a_F_contig109.616.1 vs. uniprot
Match: A0A7W7GZH5_9ACTN (Ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE n=3 Tax=Actinoplanes TaxID=1865 RepID=A0A7W7GZH5_9ACTN) HSP 1 Score: 65.1 bits (157), Expect = 5.610e-8 Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 1 Query: 178 NEVKVTVEGVARTVALEEGVSILDGLEAHDIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPEISARGFVLTCSSTVAGPGVELE 441 +EV V ++G A TV +EEGV++LDG++ D P +C+ G+C C A V ++ A L+P A GFVLTC ST A V ++ Sbjct: 259 SEVTVHLDGRATTVTVEEGVTLLDGVQRSRPDLPFACKGGVCGTCRARVVEGEVTMRRNFA-LEPAELAAGFVLTCQSTAASAKVVVD 345
BLAST of mRNA_E-siliculosus-1a_F_contig109.616.1 vs. uniprot
Match: A0A7C3ZYD2_9RHOB (Ferredoxin--NADP reductase n=1 Tax=Aliiroseovarius sp. TaxID=1872442 RepID=A0A7C3ZYD2_9RHOB) HSP 1 Score: 65.1 bits (157), Expect = 5.780e-8 Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 1 Query: 181 EVKVTVEGVARTVALEEGVSILDGLEAHDIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPEISARGFVLTCSSTVAGPGVEL 438 E +T++G +R V + G ++L+ A D+DAP SCR+G+C+ C A VTA ++ A+ D E+ +GFVLTC +EL Sbjct: 266 EAVITLDGASRKVKVAPGQTLLEAALAADLDAPFSCRAGVCSSCKAKVTAGKGEMRANHALEDYEVE-QGFVLTCQCVPTTDKIEL 350
BLAST of mRNA_E-siliculosus-1a_F_contig109.616.1 vs. uniprot
Match: A0A840WSK7_9RHOB (Ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE n=1 Tax=Rubricella aquisinus TaxID=2028108 RepID=A0A840WSK7_9RHOB) HSP 1 Score: 64.3 bits (155), Expect = 1.010e-7 Identity = 34/99 (34.34%), Postives = 55/99 (55.56%), Query Frame = 1 Query: 142 RARMSSSPLRAANEVKVTVEGVARTVALEEGVSILDGLEAHDIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPEISARGFVLTCSSTVAGPGVEL 438 R S++ + + +T++G AR + + G ++LD A D+DAP SCR+G+C+ C A VT + A+ D E+ A+G+VLTC P + L Sbjct: 249 RPAASATIAQTGAQATITLDGAAREITIAPGDTVLDAALAADLDAPFSCRAGVCSTCRARVTEGETEMIANHALEDYEV-AQGYVLTCQCLPRSPVIRL 346
BLAST of mRNA_E-siliculosus-1a_F_contig109.616.1 vs. uniprot
Match: UPI0019423BAB (phenylacetate-CoA oxygenase/reductase subunit PaaK n=1 Tax=Actinoplanes siamensis TaxID=1223317 RepID=UPI0019423BAB) HSP 1 Score: 63.9 bits (154), Expect = 1.320e-7 Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 1 Query: 178 NEVKVTVEGVARTVALEEGVSILDGLEAHDIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPEISARGFVLTCSSTVAGPGVELE 441 +EV V ++G TV +EEG ++LDG++ D P +C+ G+C C A V ++ A+ E++A GFVLTC ST A P V ++ Sbjct: 256 SEVTVHLDGRTTTVTVEEGTTLLDGVQRSRPDLPFACKGGVCGTCRARVIEGDVTMRRNFALEQAELAA-GFVLTCQSTAASPKVVVD 342 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig109.616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig109.616.1 >prot_E-siliculosus-1a_F_contig109.616.1 ID=prot_E-siliculosus-1a_F_contig109.616.1|Name=mRNA_E-siliculosus-1a_F_contig109.616.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=172bp MRVARIAIGGVCMLDLTSGFVFPAPAVSTCTRARMSSSPLRAANEVKVTVback to top mRNA from alignment at E-siliculosus-1a_F_contig109:35284..39618+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig109.616.1 ID=mRNA_E-siliculosus-1a_F_contig109.616.1|Name=mRNA_E-siliculosus-1a_F_contig109.616.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4335bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig109:35284..39618+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig109:35284..39618+ >mRNA_E-siliculosus-1a_F_contig109.616.1 ID=mRNA_E-siliculosus-1a_F_contig109.616.1|Name=mRNA_E-siliculosus-1a_F_contig109.616.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1032bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig109:35284..39618+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |