mRNA_E-siliculosus-1a_F_contig109.615.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig109.615.1 vs. uniprot
Match: D7FKU9_ECTSI (Derlin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU9_ECTSI) HSP 1 Score: 683 bits (1762), Expect = 3.960e-247 Identity = 354/374 (94.65%), Postives = 359/374 (95.99%), Query Frame = 1 Query: 1 MRAASPLALTPLLLVASLASVADGSLGINTAGARPPAISSVWTRRRDSQPSRVGLHRKHSSLDLVARLRGGVKRATVKADDEDDDADENDGMDAGPGALSTLAGVFKNMPPATRVYVLLLMVITAVDVSVGKAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFVGPLIGMPLLSTSMVAANTYVSARIEPLGVVQFQFLKIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGEDNPNFMETPDEPAPPRGRKIGAGKKTASKSKTRGTPKSGSSGSKKGGGKARPVPDFPTADGGCS 1122 MRAASPLALTPLLLVASLASVADGSLGINTAGARPPAISSVWTRRRDS PSRVGLHRKH SLDLVARLRGGVKRATVKADDEDDDA DAGPGALS L GVFKNMPPATR YVLLLMVITAVDVSVGKAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLF+GPLIGMPLLSTSMVAA+TYVSAR++PLG VQFQFL+IPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDG DNPNFMETPDEPA PRGRKIGAGKKTASKSKTRGT KSGSSGSKKGGGKARPVPDFPTADGGCS Sbjct: 1 MRAASPLALTPLLLVASLASVADGSLGINTAGARPPAISSVWTRRRDSHPSRVGLHRKHLSLDLVARLRGGVKRATVKADDEDDDAXXXXXXDAGPGALSALTGVFKNMPPATRAYVLLLMVITAVDVSVGKAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFLRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGGDNPNFMETPDEPAAPRGRKIGAGKKTASKSKTRGTSKSGSSGSKKGGGKARPVPDFPTADGGCS 374
BLAST of mRNA_E-siliculosus-1a_F_contig109.615.1 vs. uniprot
Match: A0A6U1QM22_9STRA (Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QM22_9STRA) HSP 1 Score: 184 bits (468), Expect = 1.350e-51 Identity = 110/283 (38.87%), Postives = 167/283 (59.01%), Query Frame = 1 Query: 109 AISSVWTRRR--DSQPSRVGLHRKHSS------LDL-VARLRGGVKRATVKADDEDDDADENDGMDAGPGALSTLAGVFKNMPPATRVYVLLLMVITAVDVSVGKAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFVGPLIGMPLLSTSMVAANTYVSARIEPLGVVQFQF--LKIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLD 924 A+SSV T D + + + + K SS DL + R+RGGVK+AT K ++ ++D P + +A FKN+ PATRVY+ + +V+T V ++ +D+ S++ RT K LE+WRP+TS ++GP SM N+YFL ++G LE GT + V FL+ LL +G ++G P +S+S++ A + +R++P+ +V F L +P W LPFA MG +LQA+ S A IPH G L GH YHFF ++PL+G ++ L AP ++KR LD Sbjct: 16 ALSSVATASHFTDHRYTSLSILSKQSSSLAKNTFDLDILRIRGGVKKATPKEEEAEEDE---------PKKENAIAEAFKNVLPATRVYLSIALVLTVVHMT--GMVDAQQLLSLNLVRTFKNLEIWRPITSTCFMGPPSMQMAGNIYFLVKYGQELEANDGTLQHVFFLMTQLVLLSILGGVLGAPFMSSSLITAQLWCCSRLDPMSMVGVGFMGLAVPHWLLPFALMGIDILQAQ-SIAAGIPHVFGFLTGHFYHFFYRIYPLLGGRKLLEAPNFLKRMLD 286
BLAST of mRNA_E-siliculosus-1a_F_contig109.615.1 vs. uniprot
Match: A0A836CEG4_9STRA (Tricarboxylate carrier-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEG4_9STRA) HSP 1 Score: 183 bits (465), Expect = 4.860e-49 Identity = 98/192 (51.04%), Postives = 127/192 (66.15%), Query Frame = 1 Query: 400 IDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFVGPLIGMPLLSTSMVAANTYVSARIEPLGVVQFQF-LKIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGEDNP-NFMETPDEPA 969 +D+ F W RT+ LELWRPLT+ +YLGP+SM W TNVYFL +G+ LE V+GTAEQ++FLL + +G LI +P++STS+++A Y SAR++PLG V FQF L++P W LP+ LQA G AAIPH VGIL GH Y F PLMG + L APGW++RR+DG NFME P + A Sbjct: 7 VDAKEVFVASWPRTILNLELWRPLTAALYLGPISMHWATNVYFLITYGSHLEAVNGTAEQIVFLLTAFVCVTILGALISLPVVSTSLISACVYGSARVDPLGSVPFQFGLQMPRWLLPYGLAVVDFLQA-GKIEAAIPHAVGILAGHFYTFNRNTLPLMGGRDWLRAPGWLQRRVDGGGGATNFMEKPKKTA 197
BLAST of mRNA_E-siliculosus-1a_F_contig109.615.1 vs. uniprot
Match: A0A7S1XM51_9STRA (Derlin n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XM51_9STRA) HSP 1 Score: 152 bits (385), Expect = 1.280e-39 Identity = 107/304 (35.20%), Postives = 160/304 (52.63%), Query Frame = 1 Query: 25 LTPLLLVASLASVADGSLGINTAGARPPAISSVWTRRRDSQPSRVGLHRKHSSLDLVARLRGGVKRATVKADDEDDDADENDGMDAGPGALSTLAGVFKNMPPATRVYVLLLMVITAVDVSVGKAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFVGPLIGMPLLSTSMVAANTYVSARIEPLGVVQFQFL--KIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGE 930 L LLL+A+ A++A G G W +VGL L V +RGG K+ K E G+ GA + +K + PATR+Y+ + M +T V + + N ++D T+ L+ WRPLTS +LGPL+M+ T++YF+ G LE GTA+ V+FL+ +LL +GP++GMP S+S+V+A +VS R +P+ + F+ + W +PFA+M LQA+ S AA+PH +G L GH YHF T + PL+G L AP MK+ L+G+ Sbjct: 4 LAQLLLLAACAALAGADAGRTRIGR-----GVGWGAAGRHGLGQVGLSASGRGLAAVPAIRGGAKKK--KXXXXXXXXPEAKGI----GAFAKKE--YKKLKPATRLYLSVAMALTMVATA---GLVDPNLMALDPLATIFNLQFWRPLTSAFFLGPLNMNMATSLYFVAMFGQELEKDKGTADYVVFLISQITLLTLLGPMLGMPYTSSSLVSAALWVSCRRKPMQKMGLGFMGMSVEAWLVPFARMVMDSLQAQ-SGAAALPHMLGFLTGHCYHFVTKIWPLVGGTNWLDAPPRMKKMLNGK 290
BLAST of mRNA_E-siliculosus-1a_F_contig109.615.1 vs. uniprot
Match: A0A1Z5K2V8_FISSO (Derlin n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2V8_FISSO) HSP 1 Score: 151 bits (382), Expect = 3.110e-39 Identity = 102/286 (35.66%), Postives = 154/286 (53.85%), Query Frame = 1 Query: 178 SSLDLVARLRGGV-------KRATVKADDEDDDADENDGMDAGPGALSTLAGVFKNMPPATRVYVLLLMVITAVDVSVGKAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFVGPLIGMPLLSTSMVAANTYVSARIEPLGVVQFQFLKIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHP-LMGAKRRLGAPGWMKRRLDGEDNPNFMETPDEPAPPR----GRKIGAG 999 +S + LRGG K AT K DA E A++ +K + P TR+Y+ L+ V T + + +G+ + G ++D R + GL+LWRP+T+ +LGP S+SWL N Y+L Q+G+ LE GTA+ +FLL LL L+G P + SM+ + +V +R P V++ +P W+LP+ M + VLQA+ SP+AA+PH +GIL GH YHF + P L + L AP ++ +RLD D E+ + R GRK+G+G Sbjct: 42 NSNHRLIELRGGASKRKVAQKTATGKRKVTKKDAPEE------KSAVADTLQKYKKILPLTRIYITLVGVATLLGLVLGEELTQG-LLALDPMRVLYGLQLWRPITAATFLGPPSISWLLNGYYLFQYGSSLERAYGTAQHSVFLLSQLVLLSIFSTLVGQPFFANSMITSMLHVLSRSMPHQKVKWLVFTVPYWSLPYGLMASDVLQAQ-SPMAALPHIMGILTGHFYHFHKHIWPKLEQGQDWLVAPEFLSKRLDPADKDAGKESVSKALKLRKKNKGRKLGSG 319
BLAST of mRNA_E-siliculosus-1a_F_contig109.615.1 vs. uniprot
Match: A0A6U6GRJ3_9STRA (Derlin n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6GRJ3_9STRA) HSP 1 Score: 148 bits (374), Expect = 4.870e-38 Identity = 84/244 (34.43%), Postives = 140/244 (57.38%), Query Frame = 1 Query: 286 PGALSTLAGVFKNMPPATRVYVLLLMVITAVDVSVGKAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFVGPLIGMPLLSTSMVAANTYVSARIEPLGVVQFQFLKIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGEDNPNFMETPDEPAPPRGRKIGAGKKTASK 1017 P A+S +K + P TR+Y+ ++ V+T + + +G+ + G ++D R + GLELWRP T+ +LGP S+ WL + Y+L ++G+ LE GTA+ ++FL+ LL + G P + ++ A +V +R P V++ +P W+LP+ M + VLQA+ SP+AA+PH +GIL GH Y F+ + P MG + L AP ++ + LD + ++ + A + RK G G+K K Sbjct: 88 PSAISDTMQKYKAILPLTRIYITMIGVVTLMGLVLGEELAQG-VLALDPIRVMYGLELWRPFTAACFLGPPSIGWLMSAYYLFEYGSSLERAYGTAQHLVFLIWQIVLLTVLSAFFGQPFFAQPVITAMLHVLSRSMPKQKVKWLIFNVPYWSLPYGLMASDVLQAQ-SPMAALPHIMGILTGHFYFFYKFIWPKMGGEDWLTAPDFLSQWLDPNARSDSKKSVN--AALKARKKGKGRKLGGK 327
BLAST of mRNA_E-siliculosus-1a_F_contig109.615.1 vs. uniprot
Match: A0A7S2P7M0_9STRA (Derlin n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P7M0_9STRA) HSP 1 Score: 147 bits (370), Expect = 1.900e-37 Identity = 87/239 (36.40%), Postives = 138/239 (57.74%), Query Frame = 1 Query: 295 LSTLAGVFKNMPPATRVYVLLLMVITAVDVSVGKAIDSGNTFSM--DWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFVGPLIGMPLLSTSMVAANTYVSARIEPLGVVQFQFLKIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGEDNPNFMETPDEPAPPRGRKIGAGKK 1005 LS+ + +M P TRVY+ ++ ++T + + VG D G M D R + GLELWRP T+ +LGP S+ WL N Y+L ++G+ LE G+A+ ++FLL LL ++ + P +SM+ A +V +R P V++ +P W+LP+ M + VLQ++ SP +A+PH +GIL GH YHF + P +G + L AP ++ +RLD + + + A +GRK G G+K Sbjct: 91 LSSAMQKYHSMLPLTRVYITVVGIVTLLGLIVG---DEGAQMLMAFDMNRVLHGLELWRPFTAAAFLGPPSIGWLMNGYYLFEYGSSLERAYGSAQFLLFLLGQIFLLSWLSGIFAQPFFGSSMITAMLHVLSRSMPNQKVKWLIFTVPYWSLPYGLMASDVLQSQ-SPASALPHIIGILTGHFYHFHKFIWPKVGGEDWLVAPEFLSKRLDADAKRDVAKETISNAL-KGRKKGKGRK 324
BLAST of mRNA_E-siliculosus-1a_F_contig109.615.1 vs. uniprot
Match: A0A7S4N1A3_9STRA (Derlin n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N1A3_9STRA) HSP 1 Score: 143 bits (361), Expect = 3.580e-37 Identity = 81/234 (34.62%), Postives = 135/234 (57.69%), Query Frame = 1 Query: 316 FKNMPPATRVYVLLLMVITAVDVSVGKAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFVGPLIGMPLLSTSMVAANTYVSARIEPLGVVQFQFLKIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGEDNPNFMETPDEPAPPRGRKIGAGKKTASK 1017 +K P TR+Y+ ++ V+T + + +G+ + G ++D R + GLELWRP T+ +LGP S+ WL + Y+L ++G+ LE GTA+ ++FL+ LL + G P + ++ A +V +R P V++ +P W+LP+ M + VLQA+ SP+AA+PH +GIL GH Y F+ + P MG + L AP ++ + LD + ++ + A + RK G G+K K Sbjct: 4 YKATLPLTRIYITMIGVVTLMGLVLGEELAQG-VLALDPIRVMYGLELWRPFTAACFLGPPSIGWLMSAYYLFEYGSSLERAYGTAQHLVFLIWQIVLLTVLSAFFGQPFFAQPVITAMLHVLSRSMPKQKVKWLIFNVPYWSLPYGLMASDVLQAQ-SPMAALPHIMGILTGHFYFFYKFIWPKMGGEDWLTAPDFLSQWLDPNARSDSKKSVN--AALKARKKGKGRKLGGK 233
BLAST of mRNA_E-siliculosus-1a_F_contig109.615.1 vs. uniprot
Match: A0A7R9U412_9STRA (Derlin (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U412_9STRA) HSP 1 Score: 144 bits (364), Expect = 1.380e-36 Identity = 85/207 (41.06%), Postives = 125/207 (60.39%), Query Frame = 1 Query: 316 FKNMPPATRVYVLLLMVITAVDVSVGKAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFVGPLIGMPLLSTSMVAANTYVSARIEPLGVVQFQFLKIPM--WTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGE 930 FK + PATR+Y+ + +T + I + N ++D + GL+ WRPLTS ++LG L+M T++YFL +G LE GTA+ V+FLL LL + PL+GMP S+S+V+A +VS R P+ + + I M W +PF +M LQA+ +P+AA+PH +G + GH YHF T V PL+G K L AP MK+ L+G+ Sbjct: 106 FKKLRPATRLYITGALALTLLATF---GIVNPNMLALDPMAALLGLQFWRPLTSALFLGGLNMQMATSLYFLGMYGQELEKDRGTADYVVFLLTQVILLSVLAPLLGMPYTSSSVVSAALWVSCRRRPMQKLSLGVMGISMEAWLVPFGRMLIECLQAQ-NPIAALPHMLGFVSGHFYHFTTRVWPLLGGKDWLQAPPKMKKLLNGK 308
BLAST of mRNA_E-siliculosus-1a_F_contig109.615.1 vs. uniprot
Match: B7FP36_PHATC (Derlin n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FP36_PHATC) HSP 1 Score: 144 bits (363), Expect = 1.850e-36 Identity = 85/261 (32.57%), Postives = 136/261 (52.11%), Query Frame = 1 Query: 172 KHSSLDLVARLRGGVKRATVKADDEDDDADENDGMDAGPGALSTLAGVFKNMPPATRVYVLLLMVITAVDVSVGKAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFVGPLIGMPLLSTSMVAANTYVSARIEPLGVVQFQFLKIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGEDNPNFMET 954 K +SL+ +R G K+ A ++ ALS +K + P TR+Y+ ++ V T + + G+ + ++D R G E WRP T+ +LGP+S+ WL + Y+L ++G+ LE GTA+ +FL+ L F+ L G P SM+ A +V +R P V++ +P W+LP+ M + VLQA+ S +AA+PH +GI+ GH YHF + P G + L AP ++ RRLD + E+ Sbjct: 62 KSASLNSKSRTATGKKKVGATAAEK-------------KSALSDTMQRYKRIRPLTRIYITMVGVATLISIIFGEEFTQ-SLLALDPTRAFYGFEFWRPFTAASFLGPISIGWLMSGYYLFEYGSSLERAYGTAQHFVFLMSQVFGLTFLSSLTGQPFFGQSMITAMLHVLSRAMPHQKVKWLIFTVPYWSLPYGLMASDVLQAQ-SAMAALPHILGIVSGHFYHFHKFIWPKKGGEDWLVAPDFLVRRLDPDSKDAARES 307 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig109.615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig109.615.1 >prot_E-siliculosus-1a_F_contig109.615.1 ID=prot_E-siliculosus-1a_F_contig109.615.1|Name=mRNA_E-siliculosus-1a_F_contig109.615.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=375bp MRAASPLALTPLLLVASLASVADGSLGINTAGARPPAISSVWTRRRDSQPback to top mRNA from alignment at E-siliculosus-1a_F_contig109:30197..34937- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig109.615.1 ID=mRNA_E-siliculosus-1a_F_contig109.615.1|Name=mRNA_E-siliculosus-1a_F_contig109.615.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4741bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig109:30197..34937- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig109:30197..34937- >mRNA_E-siliculosus-1a_F_contig109.615.1 ID=mRNA_E-siliculosus-1a_F_contig109.615.1|Name=mRNA_E-siliculosus-1a_F_contig109.615.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2250bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig109:30197..34937- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |