mRNA_E-siliculosus-1a_F_contig109.613.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig109.613.1 vs. uniprot
Match: D7FKU7_ECTSI (Casein kinase II subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU7_ECTSI) HSP 1 Score: 485 bits (1249), Expect = 1.530e-169 Identity = 236/243 (97.12%), Postives = 237/243 (97.53%), Query Frame = 3 Query: 60 MIVRKASMLLVSLVCAAPSTDCCTIDPKLTSLRGGGGRQAWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYPSGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVHAEELSASDPDGHQERLS 788 MIVRKA MLL+SLVCAA TDCCTIDPKLTSLRGGGGRQAWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYPSGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVHAEELSA D DG QERLS Sbjct: 1 MIVRKALMLLLSLVCAA--TDCCTIDPKLTSLRGGGGRQAWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYPSGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVHAEELSAPDQDGRQERLS 241
BLAST of mRNA_E-siliculosus-1a_F_contig109.613.1 vs. uniprot
Match: I1I694_BRADI (Casein kinase II subunit beta n=23 Tax=BOP clade TaxID=359160 RepID=I1I694_BRADI) HSP 1 Score: 189 bits (479), Expect = 4.600e-53 Identity = 93/205 (45.37%), Postives = 127/205 (61.95%), Query Frame = 3 Query: 135 DPKLTSLRGGGGRQ-AWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYP-SGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVHAE 743 D + + + G G +WI FC GNEFF E+ +I++ N + +PY AL +IL V + ++SSA +LYGL+HAR++++ +GL +LEKF DFGRCPRVYC GQ LP G+SD P+ S+VKVFCP+C DL+YP S Y DGA++GTT PHL L+ +P LK + YVPRVFGFK+H + Sbjct: 69 DSEDSDVSGSEGEDTSWIAWFCSLRGNEFFCEIDDDYIQDDFNLCGLSN--QVPYYDYALDLILDIESSNGDVFTEEQNELIESSAEMLYGLIHARYILTSKGLAAMLEKFKNYDFGRCPRVYCCGQPCLPAGQSDIPRSSTVKVFCPKCEDLHYPRSKYQGNIDGAYFGTTFPHLFLMTYPHLKPQKPSQQYVPRVFGFKLHKQ 271
BLAST of mRNA_E-siliculosus-1a_F_contig109.613.1 vs. uniprot
Match: A0A2P6TZ54_CHLSO (Casein kinase II subunit beta n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TZ54_CHLSO) HSP 1 Score: 189 bits (479), Expect = 8.190e-53 Identity = 90/188 (47.87%), Postives = 121/188 (64.36%), Query Frame = 3 Query: 177 AWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYP-SGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVH 737 +WI FC GNEFF EV +I++ N G +PY AL +IL + V + V+ +A +LYGL+HAR++++ +GL + +KF DFGRCPRVYC GQA LPVG SD P+QS+VK+FCP+C D+YYP S Y DGA++GTT HL L +P+L+ T HYVP+VFGFK+H Sbjct: 40 SWISWFCSLKGNEFFCEVAEDYIQDDFNLS--GLSSQVPYYDYALDLILDSESLQNEVLTEQAQEMVEEAAEILYGLIHARYILTSRGLSAMCDKFKNCDFGRCPRVYCNGQACLPVGLSDIPRQSTVKLFCPKCEDVYYPRSKYHGNLDGAYFGTTFAHLFQLTYPQLRPAKPTDHYVPKVFGFKIH 225
BLAST of mRNA_E-siliculosus-1a_F_contig109.613.1 vs. uniprot
Match: A0A453CJQ9_AEGTS (Casein kinase II subunit beta n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453CJQ9_AEGTS) HSP 1 Score: 186 bits (471), Expect = 1.330e-52 Identity = 89/203 (43.84%), Postives = 127/203 (62.56%), Query Frame = 3 Query: 135 DPKLTSLRGGGGRQ-AWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYP-SGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVH 737 D + + L G G +WI FC GNEFF EV +I++ N G +PY + AL +IL + + ++S+A +LYGL+H R++++ +GL +L+K+ DFGRCPRV+C GQ LPVG+SD P+ S+VK++CP+C DLYYP S Y DGA++GTT PHL L+ +P LK + YVP+VFGFK+H Sbjct: 15 DSEESDLSGSDGEDTSWISWFCSLRGNEFFCEVDDDYIQDDFNLC--GLSGQVPYYEYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHVRYILTSKGLAAMLDKYKNYDFGRCPRVHCSGQPCLPVGQSDIPRSSNVKIYCPKCEDLYYPRSKYQSNIDGAYFGTTFPHLFLMTYPHLKPQKPSQQYVPKVFGFKLH 215
BLAST of mRNA_E-siliculosus-1a_F_contig109.613.1 vs. uniprot
Match: A0A6J0JEP3_RAPSA (Casein kinase II subunit beta n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0JEP3_RAPSA) HSP 1 Score: 187 bits (476), Expect = 1.390e-52 Identity = 85/204 (41.67%), Postives = 126/204 (61.76%), Query Frame = 3 Query: 135 DPKLTSLRGGGGRQAWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYPSGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVHAEE 746 D + + + G G +WI FC GNEFF EV ++++ N G +PY AL +IL + + V+S+A +LYGL+H R++++ +GL +LEK+ DFGRCPRV+C GQ+ LPVG+SD P+ S+VK++CP+C DLYYP + DGA++GTT PHL L+ +K + YVP++FGFKVH ++ Sbjct: 74 DSEGSDVSGSEGETSWISWFCNLRGNEFFCEVDEDYVQDDFNLC--GLSGQVPYYDYALDLILDVESSNSDMFTEEQNELVESAAEMLYGLIHVRYILTTKGLTAMLEKYKNYDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKCEDLYYPRSKYQDIDGAYFGTTFPHLFLMAHGNMKPQKPSQSYVPKIFGFKVHKKQ 275
BLAST of mRNA_E-siliculosus-1a_F_contig109.613.1 vs. uniprot
Match: A0A2J8A3W0_9CHLO (Casein kinase II subunit beta n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A3W0_9CHLO) HSP 1 Score: 187 bits (474), Expect = 2.100e-52 Identity = 89/197 (45.18%), Postives = 124/197 (62.94%), Query Frame = 3 Query: 177 AWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYP-SGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVHAEELSASDP 764 +WI FC GNEFF EV +I + N G +PY + AL +IL + D ++S+A +LYGL+HAR++V+ +GL +LEKF +FGRCPR YC+GQA LPVG +D P QS+VK+FCP+C D++YP S Y + DGA++GTT PHLLL+ +P + + YVPR+FGFK+H +P Sbjct: 43 SWISWFCSLRGNEFFCEVDEEYIEDDFNLS--GLSTQVPYYEYALDMILDNEPPQDVLLTDQQHELLESAAEMLYGLIHARYIVTARGLACMLEKFKNYEFGRCPRFYCEGQACLPVGTADVPGQSTVKIFCPKCEDIFYPRSEYQCSIDGAYFGTTFPHLLLMTYPMYRPPKSVEQYVPRIFGFKLHPSAYGNREP 237
BLAST of mRNA_E-siliculosus-1a_F_contig109.613.1 vs. uniprot
Match: UPI00098DFA46 (putative casein kinase II subunit beta-4 isoform X1 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098DFA46) HSP 1 Score: 187 bits (474), Expect = 2.500e-52 Identity = 90/203 (44.33%), Postives = 126/203 (62.07%), Query Frame = 3 Query: 135 DPKLTSLRGGGGRQ-AWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYP-SGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVH 737 D + + + G G +WI FC GNEFF EV +I++ N G +PY AL +IL + + V+S+A +LYGL+H R++++ +G+ +L+KF DFGRCPRVYC GQ LPVG+SD P+ S+VK++CP+C D+YYP S Y DGA++GTT PHL L+ +P LK + YVPRVFGFK+H Sbjct: 70 DSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLC--GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLDKFKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNLDGAYFGTTFPHLFLMTYPHLKPQKPSQRYVPRVFGFKIH 270
BLAST of mRNA_E-siliculosus-1a_F_contig109.613.1 vs. uniprot
Match: UPI001B3BE397 (casein kinase II subunit beta-2 isoform X1 n=2 Tax=Gossypium hirsutum TaxID=3635 RepID=UPI001B3BE397) HSP 1 Score: 184 bits (468), Expect = 2.790e-52 Identity = 92/203 (45.32%), Postives = 126/203 (62.07%), Query Frame = 3 Query: 135 DPKLTSLRGGGGRQ-AWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYP-SGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVH 737 D + + + G G +WI FC GNEFF EV +I++ N G +PY AL +IL + + V+S+A +LYGL+HARF+++ +G+ +L+K+ DFGRCPRVYC GQ LPVG+SD P+ S+VK+FCPRC D+YYP S Y DGA++GTT PHL L+ + LK + YVPRVFGFK+H Sbjct: 6 DTEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLC--GLSSQVPYYDYALDLILDIESSHGDMFTEEQNELVESAAEMLYGLIHARFILTSKGMAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDFPRSSTVKIFCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYSHLKPLKASQIYVPRVFGFKLH 206
BLAST of mRNA_E-siliculosus-1a_F_contig109.613.1 vs. uniprot
Match: G7JYM7_MEDTR (Casein kinase II subunit beta n=3 Tax=Trifolieae TaxID=163742 RepID=G7JYM7_MEDTR) HSP 1 Score: 187 bits (474), Expect = 3.250e-52 Identity = 90/203 (44.33%), Postives = 129/203 (63.55%), Query Frame = 3 Query: 135 DPKLTSLRGGGGRQ-AWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYP-SGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVH 737 D + + + G G +WI FC GNEFF EV +I++ N G +PY AL +IL + + ++S+A +LYG++HAR++++ +GL +L+K+ DFGRCPRVYC GQ LPVG+SD P+ S+VK++CPRC D+YYP S Y DGA++GTT PHLLL+ + +LK + +YVPRVFGFK+H Sbjct: 79 DSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLC--GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGMIHARYILTSKGLAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLLLMTYGQLKPQKPSQNYVPRVFGFKLH 279
BLAST of mRNA_E-siliculosus-1a_F_contig109.613.1 vs. uniprot
Match: A0A0V0I873_SOLCH (Casein kinase II subunit beta n=3 Tax=Solanum TaxID=4107 RepID=A0A0V0I873_SOLCH) HSP 1 Score: 185 bits (470), Expect = 3.540e-52 Identity = 91/203 (44.83%), Postives = 126/203 (62.07%), Query Frame = 3 Query: 135 DPKLTSLRGGGGRQ-AWIQDFCRTPGNEFFAEVPLSFIRESMNSIDIGRGVDIPYRQEALGVILGERRIGVGVHGDNNASTVQSSAALLYGLLHARFLVSPQGLKVVLEKFSKADFGRCPRVYCQGQAVLPVGESDRPKQSSVKVFCPRCGDLYYP-SGYVRACDGAFWGTTLPHLLLLGWPELKTTPNTSHYVPRVFGFKVH 737 D + + + G G +WI FC GNEFF EV +I++ N G +PY AL +IL + + V+S+A +LYGL+H R++++ +G+ +LEK+ DFGRCPRVYC GQ LPVG+SD P+ S+VK++CPRC D+YYP S Y DGA++GTT PHL L+ + LK T +YVPRVFGFK+H Sbjct: 36 DSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLC--GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLYLMTYGHLKPQKPTQNYVPRVFGFKLH 236 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig109.613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig109.613.1 >prot_E-siliculosus-1a_F_contig109.613.1 ID=prot_E-siliculosus-1a_F_contig109.613.1|Name=mRNA_E-siliculosus-1a_F_contig109.613.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=244bp MIVRKASMLLVSLVCAAPSTDCCTIDPKLTSLRGGGGRQAWIQDFCRTPGback to top mRNA from alignment at E-siliculosus-1a_F_contig109:16748..20359+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig109.613.1 ID=mRNA_E-siliculosus-1a_F_contig109.613.1|Name=mRNA_E-siliculosus-1a_F_contig109.613.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3612bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig109:16748..20359+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig109:16748..20359+ >mRNA_E-siliculosus-1a_F_contig109.613.1 ID=mRNA_E-siliculosus-1a_F_contig109.613.1|Name=mRNA_E-siliculosus-1a_F_contig109.613.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1464bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig109:16748..20359+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |