mRNA_E-siliculosus-1a_F_contig1089.608.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1089.608.1 vs. uniprot
Match: A0A6H5JJH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJH2_9PHAE) HSP 1 Score: 593 bits (1530), Expect = 3.020e-203 Identity = 315/358 (87.99%), Postives = 327/358 (91.34%), Query Frame = 2 Query: 317 MPCGDGLDSRTTAVVPESEFHQEDSFDLKCGMTPSSAAVSSDDTERATTAAGRKMEQCAGWIQEVRDSLRGRRLFTLLAVVNLVNYIDRG-VIPGGSEEFNGFIQKTLHTDRPDVFLGVLQSGFILGFSAACFVFTSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFIMAPLAMACSLVPRDRAMAVSNASDYGASPGSATTPATDTTGNRSGSPKDGESSGTAESPKVEQGDGSPARAGSAAAVLSSVATPSPEGNLRRRPDREKKRLLGVRGVAKGG 1387
M CGDGLDSRTT VPE+E H+E S D KCGMTPSS AVSS DTERATTA GRK+EQCAGW+QE RD LRGRRLFTLLAVVNLVNY+DRG VIPGGSEEFNGFIQKTLHTDRPDVFLG+LQSG+ILGFSAACFVFTSLARRRSPF+LMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANS LGWPWAFY EAF MAPLAMACSLVPRDRAMAVSNA D+GASPGS TP TD TGN SGSPKDG+SSG AESP VEQG GSPAR GS++AV SSVA P PEGNLRRRPDREKKRLLGVR AKGG
Sbjct: 1 MRCGDGLDSRTTPGVPENECHEESS-DFKCGMTPSSTAVSSSDTERATTAVGRKLEQCAGWVQEARDYLRGRRLFTLLAVVNLVNYLDRGKVIPGGSEEFNGFIQKTLHTDRPDVFLGILQSGYILGFSAACFVFTSLARRRSPFNLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSGLGWPWAFYLEAFFMAPLAMACSLVPRDRAMAVSNAFDHGASPGSPATPTTDATGNLSGSPKDGDSSGMAESPTVEQGYGSPARVGSSSAVSSSVAMPCPEGNLRRRPDREKKRLLGVRDGAKGG 357
BLAST of mRNA_E-siliculosus-1a_F_contig1089.608.1 vs. uniprot
Match: D7FMS4_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS4_ECTSI) HSP 1 Score: 535 bits (1379), Expect = 3.420e-181 Identity = 282/304 (92.76%), Postives = 288/304 (94.74%), Query Frame = 2 Query: 479 MEQCAGWIQEVRDSLRGRRLFTLLAVVNLVNYIDRGVIPGGSEEFNGFIQKTLHTDRPDVFLGVLQSGFILGFSAACFVFTSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFIMAPLAMACSLVPRDRAMAVSNASDYGASPGSATTPATDTTGNRSGSPKDGESSGTAESPKVEQGDGSPARA-GSAAAVLSSVATPSPEGNLRRRPDREKKRLLGVRGVAKGG 1387
MEQCAGW+QE RDSLRGRRLFTLLAVVNLVNY+DRGVIPGGSEEFNGFIQKTLHTDRPDVFLG+LQSGFILGFSAACFVF SLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAF MAPLAMACSLVPRDRAMAVSNASDYGA PGS TP TDTTGN SGSPKDGESSG AESPKVEQG GSPARA GS++AV SSVATPSPEG+LRRRPDREKKRLLGV A GG
Sbjct: 1 MEQCAGWVQEARDSLRGRRLFTLLAVVNLVNYLDRGVIPGGSEEFNGFIQKTLHTDRPDVFLGILQSGFILGFSAACFVFPSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFFMAPLAMACSLVPRDRAMAVSNASDYGAPPGSTATPTTDTTGNLSGSPKDGESSGMAESPKVEQGYGSPARAEGSSSAVSSSVATPSPEGDLRRRPDREKKRLLGVCDGAGGG 304
BLAST of mRNA_E-siliculosus-1a_F_contig1089.608.1 vs. uniprot
Match: A0A835YQ86_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ86_9STRA) HSP 1 Score: 183 bits (464), Expect = 5.720e-48 Identity = 94/188 (50.00%), Postives = 127/188 (67.55%), Query Frame = 2 Query: 512 RDSLRGRRLFTLLAVVNLVNYIDRGVIPGGSEEFNGFIQKTLHTDRPDVFLGVLQSGFILGFSAACFVFTSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFIMAPLAMA 1075
R +LRG +F LL N++ ++DRG++PG S+E N FI+ +L+T PDVFLG+LQS FILGF+A+ VF L + F L+ GL ++ A + G A+ +GS+ L ARLL+GVGEASF VVPP+I D A P E G WLAL++TA PVG +GY+YGS LA+S L W A++ E +M PL A
Sbjct: 40 RCALRGSNVFLLLTATNMMIFLDRGILPGCSQEINEFIEDSLNTSTPDVFLGLLQSAFILGFAASTLVFAHLTHYYNAFKLIGVGLIVFAAALLLTGAAEYIGSFWFLFCARLLTGVGEASFTCVVPPIILDNAAPHEGGKWLALYFTAIPVGTALGYIYGSLLAHSRLSWSGAYWLEVPVMLPLIAA 227
BLAST of mRNA_E-siliculosus-1a_F_contig1089.608.1 vs. uniprot
Match: A0A418AU96_9STRA (MFS domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AU96_9STRA) HSP 1 Score: 174 bits (441), Expect = 4.050e-44 Identity = 85/184 (46.20%), Postives = 120/184 (65.22%), Query Frame = 2 Query: 536 LFTLLAVVNLVNYIDRGVIPGGSEEFNGFIQKTLHTDRPDV--FLGVLQSGFILGFSAACFVFTSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFIMAPLAMACS 1081
+F L ++NL+N++DRG+IPG +F FI++TLH D +LG+L S FI ++ +F L+ PF L+A GL +WC A V G AKP S+ VLL R++SG+GE+SF + PP I D APP +R LWL +F++ VG +GY YG+ +ANS GW WAF+ EA +MAPL +AC+
Sbjct: 217 IFGLFCLINLLNFVDRGIIPGAPTQFQFFIKETLHVAVGDESKYLGLLASSFIASYAGFILLFGYLSIFMKPFHLVAMGLFVWCLAVVVCGSAKPANSFYVLLFGRIISGIGESSFQCIAPPFIDDHAPPAQRTLWLGVFFSCISVGTAVGYEYGALMANSAWGWGWAFHLEAIMMAPLVLACA 400
BLAST of mRNA_E-siliculosus-1a_F_contig1089.608.1 vs. uniprot
Match: A0A1V9ZLQ6_9STRA (Major Facilitator Superfamily (MFS) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZLQ6_9STRA) HSP 1 Score: 168 bits (426), Expect = 2.040e-43 Identity = 84/183 (45.90%), Postives = 113/183 (61.75%), Query Frame = 2 Query: 536 LFTLLAVVNLVNYIDRGVIPGGSEEFNGFIQKTLHTD--RPDVFLGVLQSGFILGFSAACFVFTSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFIMAPLAMAC 1078
LF L +NL+NY+DRG+IPG +F FI++TLH D + V+LG+L S FI ++ +F L+ PF L+ GL +WC A + G+AKP S+ +LL R+LSG+GE+SF + PP I D AP R LW+ +F+T G +GY YG+ LANS GW WAFY A M PLA C
Sbjct: 7 LFLLFCGINLLNYVDRGIIPGAPTQFQYFIERTLHVDVSQEGVYLGLLASSFIASYALFIMLFGYLSIFVKPFRLIGIGLLVWCVAMLLCGLAKPAQSFGLLLAGRILSGIGESSFQCIAPPFIDDYAPASTRTLWMGVFFTLTSAGTALGYAYGAVLANSSWGWDWAFYIVAIAMFPLAYIC 189
BLAST of mRNA_E-siliculosus-1a_F_contig1089.608.1 vs. uniprot
Match: T0RNB1_SAPDV (MFS domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RNB1_SAPDV) HSP 1 Score: 169 bits (427), Expect = 2.330e-43 Identity = 94/189 (49.74%), Postives = 122/189 (64.55%), Query Frame = 2 Query: 536 LFTLLAVVNLVNYIDRGVIPGGSEEFNGFIQKTLHTDRPD---VFLGVLQSGFILGFSAACFVFTSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFIMAPLAMAC-SLVP 1090
+F LL V+NL+N+IDRG+IPG +F FIQ+T H PD V+LG+L S FI +S +F L+ R PF+L A GLG+W A V G+AK GS+ +LL+ RLLSGVGE+SF P I + APPG+R LWL +FY+ G +GY YGS LA + LGW AFY A IM PL AC +++P
Sbjct: 10 VFGLLCVINLLNFIDRGIIPGAPIQFQAFIQQT-HGVAPDHVSVYLGLLVSAFIASYSVFICIFGYLSMRHRPFTLAAIGLGLWVLALVVCGLAKTAGSFYLLLIGRLLSGVGESSFHATTPSFIDEFAPPGKRTLWLGIFYSGMSAGTALGYSYGSLLART-LGWDVAFYLIALIMLPLVYACYAMIP 196
BLAST of mRNA_E-siliculosus-1a_F_contig1089.608.1 vs. uniprot
Match: A0A4D9D5W1_9STRA (MFS domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5W1_9STRA) HSP 1 Score: 169 bits (428), Expect = 4.300e-43 Identity = 88/185 (47.57%), Postives = 121/185 (65.41%), Query Frame = 2 Query: 539 FTLLAVVNLVNYIDRGVIPGGSEEFNGFIQKTLHTDRPDVFLGVLQSGFILGFSAACFVFTSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERG-LWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFIMAPLAMACSLVP 1090
FT L +NL+NYIDRG+IPG +EEF+ F+ +L T PD+F+G+LQS FI+GFS A VF + +PF ++ GL +W A +G+A + SY +L +AR+LSGVGEASF V PP I D G+ G W+A+FYTA P+G IGY +G+ A S W F+ E+F+M P A+ C L+P
Sbjct: 20 FTFLFFLNLLNYIDRGIIPGAAEEFSDFVAHSLGTSSPDLFVGLLQSAFIVGFSLAAIVFGHVIHYVAPFKMVGVGLVIWIIATALSGLAHHVASYYLLCIARMLSGVGEASFQCVAPPFILDLG--GDSGGRWVAVFYTAIPLGTAIGYPWGALFAGSPWTWAGGFWIESFLMLPFAVTCFLLP 202
BLAST of mRNA_E-siliculosus-1a_F_contig1089.608.1 vs. uniprot
Match: A0A1V9Y4F8_9STRA (Major Facilitator Superfamily (MFS) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y4F8_9STRA) HSP 1 Score: 172 bits (435), Expect = 1.010e-42 Identity = 90/183 (49.18%), Postives = 122/183 (66.67%), Query Frame = 2 Query: 536 LFTLLAVVNLVNYIDRGVIPGGSEEFNGFIQKTLH--TDRPDVFLGVLQSGFILGFSAACFVFTSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFIMAPLAMAC 1078
+FTLL V+NL+NY+DRG+IPG EF GFIQ+T H ++R ++G+LQS FI +S +F L+ R PF L A GL +W + V G+AKPL S+ VLL+ RL+SG+GE+SF PP I + AP +R LWL +FY A VG +G+ YGS +A++ +GW +Y A IMAPLA AC
Sbjct: 11 VFTLLCVINLLNYLDRGIIPGAPIEFQGFIQETHHVASNRVSFYIGLLQSSFIASYSIFICIFGYLSMTRKPFQLSAIGLFIWVLSIVLCGLAKPLESFWVLLVGRLISGIGESSFQATTPPFIDEFAPKEKRTLWLGIFYAAVSVGQALGFSYGSVMASN-VGWDIGYYITAAIMAPLAFAC 192
BLAST of mRNA_E-siliculosus-1a_F_contig1089.608.1 vs. uniprot
Match: A0A067D6X4_SAPPC (MFS domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D6X4_SAPPC) HSP 1 Score: 167 bits (422), Expect = 1.210e-42 Identity = 88/183 (48.09%), Postives = 119/183 (65.03%), Query Frame = 2 Query: 536 LFTLLAVVNLVNYIDRGVIPGGSEEFNGFIQKT--LHTDRPDVFLGVLQSGFILGFSAACFVFTSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFIMAPLAMAC 1078
+FTLL V+NL+NY+DRG+IPG EF FIQ+T + +D V++G+LQS FI +S +F L+ R PF+L A GL +W + V G+AKPL S+ VLL+ RL+SG+GE+SF PP I + AP +R LWL +FY A VG +G+ YGS +A + GW +Y A IM PLA AC
Sbjct: 11 VFTLLCVINLLNYLDRGIIPGAPIEFQAFIQRTHNVASDGVSVYIGLLQSSFIASYSIFICIFGYLSMTRKPFTLSAIGLFIWVLSIVLCGLAKPLASFWVLLVGRLISGIGESSFQATTPPFIDEFAPKEKRTLWLGIFYAAVSVGQALGFSYGSVMAATA-GWDIGYYITAAIMVPLAFAC 192
BLAST of mRNA_E-siliculosus-1a_F_contig1089.608.1 vs. uniprot
Match: A0A1V9YN35_9STRA (Major Facilitator Superfamily (MFS) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YN35_9STRA) HSP 1 Score: 166 bits (420), Expect = 1.820e-42 Identity = 88/183 (48.09%), Postives = 112/183 (61.20%), Query Frame = 2 Query: 536 LFTLLAVVNLVNYIDRGVIPGGSEEFNGFIQKTLHTDRPDV--FLGVLQSGFILGFSAACFVFTSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITDTAPPGERGLWLALFYTAQPVGAGIGYVYGSALANSCLGWPWAFYFEAFIMAPLAMAC 1078
+F LL +NL+NY+DRG+IPG EF FIQ H +V ++GVL S FI +S +F ++ R PF L A GL +W A V G+A PL S+ VLL+ RLLSG+GE+SF PP I + APP +R LWL +FY G +GY YGS A + +GW W FY AFIM PLA AC
Sbjct: 11 IFALLCAINLLNYVDRGIIPGAPVEFQLFIQTYHHVSPKNVSFYIGVLVSAFIASYSVFICIFGYMSMTRRPFLLAAIGLFIWVLAIVLCGLALPLKSFTVLLIGRLLSGIGESSFHATAPPFIDEFAPPEKRTLWLGIFYAGLSAGTAVGYSYGSITART-IGWDWGFYITAFIMFPLAYAC 192 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1089.608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1089.608.1 >prot_E-siliculosus-1a_F_contig1089.608.1 ID=prot_E-siliculosus-1a_F_contig1089.608.1|Name=mRNA_E-siliculosus-1a_F_contig1089.608.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=357bp MPCGDGLDSRTTAVVPESEFHQEDSFDLKCGMTPSSAAVSSDDTERATTAback to top mRNA from alignment at E-siliculosus-1a_F_contig1089:32817..37775+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1089.608.1 ID=mRNA_E-siliculosus-1a_F_contig1089.608.1|Name=mRNA_E-siliculosus-1a_F_contig1089.608.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4959bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1089:32817..37775+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1089:32817..37775+ >mRNA_E-siliculosus-1a_F_contig1089.608.1 ID=mRNA_E-siliculosus-1a_F_contig1089.608.1|Name=mRNA_E-siliculosus-1a_F_contig1089.608.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2142bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1089:32817..37775+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |