mRNA_E-siliculosus-1a_F_contig1089.604.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1089.604.1 vs. uniprot
Match: D7FMS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS8_ECTSI) HSP 1 Score: 550 bits (1417), Expect = 1.180e-194 Identity = 336/373 (90.08%), Postives = 347/373 (93.03%), Query Frame = 1 Query: 1 MGSNTGDFSDESSSRASSASRRGTTRELALCSTAXXXXXXESDDDYLSRVTHLRLQNKGISSLDNPDVFDACHSLKVLYLYDNCVESLKGLEKLQQIEQLFADNNLLTTIQGTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVARQRLQRGQCFTIEQASIDGIKDSLVLLDASGNGMGGTEIEGILHLYRLETLNLAENGHLRQELSYVVDLVSSLEALRDLDLRGNVVSRMAKYFERAVTRCGDFLATLDGKPVHAQHRSMLQRLDRHKRSEARKSAAQTLARSSTHAPMAEPGTQREDSARLHDGDFSKGHSHSQHEDAAKKSSMLDLNSSLRTTRAGVRFASSAGTSSGTSQDDRDKPLISWASSR 1119 M S TG+FSDESSSRASSASRRGTTRELALCSTA XXXXXESDDDYLSRVTHLRLQNKGISSLDNPDVFDACHSLKVLYLYDNCVESLKGLEKLQ+IEQLFADN XXXXXXXXXXXXXXXXXXXXXXXXXXXXX VARQRLQRGQCFTI+QASIDGIKDSLVLLDASGNGMGGTEIEGILHLYRLETLNLAEN QE++ VVDLVSSLEALRDLDLRGN+VSRMAKYFERAVTRCGD LATLDGKPVHAQHRSMLQRLDRHKRSEARKSAA+TLARS+THAP+AEPG QREDSARLHDGDFSKGHSHS+H+D AKKSSMLDLN SLRTTRAGVRFASS GTSS TSQDDRDKPLISWASSR Sbjct: 1 MDSITGEFSDESSSRASSASRRGTTRELALCSTATXXXXXESDDDYLSRVTHLRLQNKGISSLDNPDVFDACHSLKVLYLYDNCVESLKGLEKLQRIEQLFADNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARQRLQRGQCFTIDQASIDGIKDSLVLLDASGNGMGGTEIEGILHLYRLETLNLAENDI--QEMAQVVDLVSSLEALRDLDLRGNIVSRMAKYFERAVTRCGDLLATLDGKPVHAQHRSMLQRLDRHKRSEARKSAAKTLARSNTHAPIAEPGAQREDSARLHDGDFSKGHSHSEHQDPAKKSSMLDLNPSLRTTRAGVRFASSVGTSSSTSQDDRDKPLISWASSR 371
BLAST of mRNA_E-siliculosus-1a_F_contig1089.604.1 vs. uniprot
Match: A0A2D4BJ87_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJ87_PYTIN) HSP 1 Score: 89.0 bits (219), Expect = 4.700e-16 Identity = 110/258 (42.64%), Postives = 143/258 (55.43%), Query Frame = 1 Query: 136 YLSRVTHLRLQNKGISSLDNPDVFDACHSLKVLYLYDNCVESLKGLEKLQQIEQLFADNNLLTTIQGTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVARQRLQRGQCFTIEQASIDGIKDSLVLLDASGNGMGGTEIEGI--LHLYR-LETLNLAENGHLRQELSYVVDLVSSLEALRDLDLRGNVVSRMAKYFERAVTRCGDFLATLDGKPVHAQHRSMLQRLDRHK---RSEARKSAAQTLARSST-HAPMA 888 YL R+THL L + F C +LKVLYLYDN +E+++GL++++Q+ L NN XXXXXXXXXXXXXXXXXXXXXXXXXXXXX QRL F+ E +SI + SL +L+ + +E + L L R L+ L+L++N L L V LV SL L DLDL N V+ KY E+ +T LA LD + + A R M+Q HK R E +++ Q A SST AP A Sbjct: 44 YLKRITHLTLNGNDKKVVKRMQNFHYCPNLKVLYLYDNEIEAIEGLDRVRQLTHLHLQNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRLSPSSTFSFEPSSIQALCRSLRVLN-----LANCRVESVRALELLRGLQVLDLSKN--LFASLEDVFSLVGSLSVLVDLDLTLNPVTTQPKYREKVITFSSPRLALLDKRDIDANQRRMMQSHMAHKFRKRQEQEQASNQEPALSSTLQAPSA 294
BLAST of mRNA_E-siliculosus-1a_F_contig1089.604.1 vs. uniprot
Match: UPI001E1CF726 (uncharacterized protein LOC123514193 n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1CF726) HSP 1 Score: 80.1 bits (196), Expect = 9.580e-13 Identity = 94/258 (36.43%), Postives = 131/258 (50.78%), Query Frame = 1 Query: 130 DDYLSRVTHLRLQNKGISSLDNPDVFDACHSLKVLYLYDNCVESLKGLEKLQQIEQLFADNNLLTTIQGTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVARQRLQRGQCFTIEQASIDGIKDSLVLLDASGNGMGGTEIEGILHLYRLETLNLAENGHLRQELSYVVDLVSSLEALRDLDLRGNVVSRMAKYFERAVTRCGDFLATLDGKPVHAQHRSMLQRLDRHKRSEARKSAAQTLARSSTHAPMAEPGTQ 903 D+YL+RVTHL LQNKGI+ L++ AC V YL N + L L L+ + +L XXXXXXXXXXXXXXXXXXX HV QRL G ++ ++ ++D+L +LD GN + TE+ + L RL+ L A+N LS++ ++ L L+ L L GN V+ +Y + L TLD KPV A+ R L + DR+ R+ R+++ Q A ST TQ Sbjct: 91 DNYLARVTHLHLQNKGITHLED---VAACGGALVAYLQHNHLTRLTNLRYLRHLRELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPRGLTEL--HVQDQRLPPGDALILDPHALAVVQDTLRVLDVRGNRL--TEMGAVGLLGRLQVLRAADND--LSSLSHLGTVLGRLAHLKHLHLIGNPVTAHRRYRPAVILAASPTLETLDDKPVTARSRDFLVQADRY-RAARRETSQQPPAAPSTSGSKVPAPTQ 338
BLAST of mRNA_E-siliculosus-1a_F_contig1089.604.1 vs. uniprot
Match: A0A8K1CMN9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMN9_PYTOL) HSP 1 Score: 79.0 bits (193), Expect = 1.240e-12 Identity = 101/272 (37.13%), Postives = 145/272 (53.31%), Query Frame = 1 Query: 31 ESSSRASSASRRGTTRELALCSTAXXXXXXESDDDYLSRVTHLRLQNKGISSLDNPDVFDACHSLKVLYLYDNCVESLKGLEKLQQIEQLFADNNLLTTIQGTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVARQRLQRGQCFTIEQASIDGIKDSLVLLDASGNGMGGTEIEGILHLYRLETLNLAENGHLRQELSYVVDLVSSLEALRDLDLRGNVVSRMAKYFERAVTRCGDFLATLDGKPVHAQHRSMLQRLDRHKRSEARKSA 846 + S+R ++ R T E+ + ++ E + YL RVTHL L + C +LKVLYLYDN ++ L+GL+ + Q+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXX L F+ E+ +I + SL +L+ S + T+ +L L L+ L+L++N L +EL V L+ L +L +LDLR N V+ + KY E+A+T LA LD K + R M+Q HK + +++A Sbjct: 5 DGSARGHASRVREITTEVLVHASKLSVGKTEHLEHYLKRVTHLTLNGSEKKVIKRIQHLQRCPNLKVLYLYDNEIQVLEGLDGVSQLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPSTVFSFEEETIRALSRSLRVLNLSNCHITATQ--SLLGLRALQQLDLSKN--LIEELEDVFALLGGLYSLTELDLRSNPVTNIPKYREKAITFSSPRLALLDKKDIDMNQRRMMQSHLAHKHKKRQEAA 272
BLAST of mRNA_E-siliculosus-1a_F_contig1089.604.1 vs. uniprot
Match: A0A7S2D0Q8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D0Q8_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 7.140e-10 Identity = 79/239 (33.05%), Postives = 112/239 (46.86%), Query Frame = 1 Query: 97 TAXXXXXXESDDDYLSRVTHLRLQNKGISSLDNPDVFD--ACHSLKVLYLYDNCVESLKGLEKLQQIEQLFADNNLLTTIQGTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVARQRLQR-GQCFTIEQASIDGIKDSLVLLDASGNGM-GGTEIEGILHLYRLETLNLAENGHLRQELSYVVDLVSSLEALRDLDLRGNVVSRMAKYFERAVTRCGDFLATLDGKPVHAQHRSML 801 TA E DD+ RVTHL+L NK I P + A +LKVLYL +NC+E + GL+ L + +N ++ I+ XXXXXXXXXXXXXXXXX +A QR + G+ + + +L +L+ SGN + TE+ G L +L G + ++VS + L +LD G + R Y + L+ LDGKP+ HR L Sbjct: 1 TAQKKRSAEKDDELFLRVTHLQLMNKRIG----PSISGLLAVENLKVLYLQENCIERISGLDHLTXXXXXYLQHNNISVIENV--PPSLSKXXXXXXXXXXXXXXXXXYKLKELSLASQRREHLGERLLLMPECFKSFEHALSVLNLSGNALVDTTEMSGFKALKKLHM------GRNDISIGQAKNMVSQFKTLEELDFSGCDMCRERTYLRSIIEVSSKLLSKLDGKPIQPFHRKQL 227
BLAST of mRNA_E-siliculosus-1a_F_contig1089.604.1 vs. uniprot
Match: A0A225VT80_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VT80_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 8.780e-10 Identity = 108/293 (36.86%), Postives = 143/293 (48.81%), Query Frame = 1 Query: 73 TRELALCSTAXXXXXXESDDDYLSRVTHLRLQNKGISSLDNPDV---------FDACHSLKVLYLYDNCVESLKGLEKLQQIEQLFADNNLLTTIQGTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVARQRLQRGQCFTIEQASIDGIKDSLVLLDASGNGMGGTEIEGILHLYRLETLNLAENGHLRQELSYVVDLVSSLEALRDLDLRGNVVSRMAKYFERAVTRCGDFLATLDGKPVHAQHRSMLQRLDRHKRSEARKSAAQTLARSSTHAPMAEPGTQREDSARL 924 T E+ L +T E Y RVTHL L +L D C +LKVLYLYDN VE++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXX A Q + F+ E+ S+ + DSL +LD S M T+ + L LE L L++N L +L + LV + +L +LDLRGN V+ AKY E+ +T LA LD K V R M+Q HK +S+++ + SS+ + ++ +S RL Sbjct: 18 TVEVLLNATKLSVGRHEQLSHYFKRVTHLALNGDASKTLKGSDKKGVIRKIKNLHHCPNLKVLYLYDNEVETIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANQNIPVDLHFSFEEDSMRTLADSLRVLDLSNCCMVSTK--SVTLLRSLEHLYLSKN--LITDLEEIFALVGGITSLVELDLRGNPVTATAKYREQTITFSSARLALLDKKGVDPNQRRMMQTHLAHKYRNRLESSSRRQSPSSSEGKRSNQSSEPTESTRL 306
BLAST of mRNA_E-siliculosus-1a_F_contig1089.604.1 vs. uniprot
Match: A0A8J8TBB7_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8TBB7_HALGN) HSP 1 Score: 70.9 bits (172), Expect = 1.080e-9 Identity = 90/224 (40.18%), Postives = 127/224 (56.70%), Query Frame = 1 Query: 139 LSRVTHLRLQNKGISSLDNPDVFDACHSLKVLYLYDNCVESLKGLEKLQQIEQLFADNNLLTTIQGTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVARQRLQRGQCFTIEQASIDGIKDSLVLLDASGNGMGGTEIEGILHLYRLETLNLAENGHLRQELSYVVDLVSSLEALRDLDLRGNVVSRMAKYFERAVTRCGDFLATLDGKPVHAQHRSMLQRL 810 L ++THL L NK + + D+ C +L+VLYL+DN ++ + GL L+ I QL XXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++Q Q F+ ++ S+ I SL LD S + +E + +L R+E L L +N + E V ++ ++ ALR LDL N V+++ KY ++ + G L +D K V Q RS L +L Sbjct: 167 LQKLTHLHLNNKRLQRIGE-DIQKLCGNLRVLYLFDNYIDKIDGLNTLKNIVQLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQQDTQSD--FSFDEYSLAAIAGSLKYLDLSQARV--SEPMPLYYLERVEVLILKKNRIVDFE-DQVCPMLQTMNALRQLDLTDNPVTQIPKYRDQVIILTGQRLQEIDNKKVTQQERSYLMQL 384
BLAST of mRNA_E-siliculosus-1a_F_contig1089.604.1 vs. uniprot
Match: A0A813WIL9_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A813WIL9_9BILA) HSP 1 Score: 69.3 bits (168), Expect = 2.340e-9 Identity = 90/228 (39.47%), Postives = 119/228 (52.19%), Query Frame = 1 Query: 121 ESDDDYLSRVTHLRLQNKGISSLDNPDVFDACHSLKVLYLYDNCVESLKGLEKLQQIEQLFADNNLLTTIQGTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVARQRLQRGQCFTIEQASIDGIKDSLVLLDASGNGMGGT-EIEGILHLYRLETLNLAENGHLRQELSYVVDLVSSLEALRDLDLRGNVVSRMAKYFERAVTRCGDFLATLDGKPVHAQHRSML 801 ES YLSR+THL Q++GI S+D + AC L V+YLYDN + ++ L + XXXXXXXXXXXXXXXXXXXXXXXXXXXXX V Q L G+ E +I + L +L+ SGN + E+ + HL L T + +LR+ +V L+S ++ LD N + A+Y ER + L LDGKP+ A R L Sbjct: 43 ESTAHYLSRITHLPFQSRGIDSVD---IIPACRHLTVIYLYDNALSKIENLNFAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVENQHLPEGEKLVFEPRTILALAKVLQILNVSGNNLDSLIELSVLEHLEEL-TASXXXXXNLRE----LVHLLSIWPTIKRLDTNRNPLCTKARYRERLIV-VPTTLEVLDGKPIPANSRQFL 261
BLAST of mRNA_E-siliculosus-1a_F_contig1089.604.1 vs. uniprot
Match: UPI001C7155A9 (protein phosphatase 1 regulatory subunit 42-like n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C7155A9) HSP 1 Score: 67.4 bits (163), Expect = 1.170e-8 Identity = 79/229 (34.50%), Postives = 119/229 (51.97%), Query Frame = 1 Query: 139 LSRVTHLRLQNKGISSLDNPDVFDACHSLKVLYLYDNCVESLKGLEKLQQIEQLFADNNLLTTIQGTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVARQRLQRGQCFTIEQASIDGIKDSLVLLDASGNGMGGTEIEGILHLYRLETLNLAENGHLRQELSYVVDLVSSLEALRDLDLRGNVVSRMAKYFERAVTRCGDFLATLDGKPVHAQHRSMLQRLDRHKR 825 LSRVTHL L+ +GI+ +++ V C + +V +L N + L L L+ +++L XXXXXXXXXXXXXXXXXXX H+ QRL G ++ ++ ++D+L+LLD SGN M TE+ + L L+ L A N LR LS++ ++ L L++ GN V+ +Y + L LDG+ V + R L + +RH+R Sbjct: 98 LSRVTHLHLERRGITHIEDVGV---CPAARVAFLQHNHLTRLANLRPLRLLQELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPHGLQEL--HIQEQRLPPGDALVLDPHALAAVQDTLLLLDVSGNRM--TELGPVGLLNNLKVLR-AGNNDLRT-LSHLAAVLGRLRHLQEAYFTGNPVTAHRRYRPALILASQPKLENLDGRAVTSYSRDFLVQTNRHRR 317
BLAST of mRNA_E-siliculosus-1a_F_contig1089.604.1 vs. uniprot
Match: A0A818QMV6_9BILA (Hypothetical protein n=5 Tax=Adineta steineri TaxID=433720 RepID=A0A818QMV6_9BILA) HSP 1 Score: 65.5 bits (158), Expect = 4.070e-8 Identity = 85/227 (37.44%), Postives = 118/227 (51.98%), Query Frame = 1 Query: 121 ESDDDYLSRVTHLRLQNKGISSLDNPDVFDACHSLKVLYLYDNCVESLKGLEKLQQIEQLFADNNLLTTIQGTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVARQRLQRGQCFTIEQASIDGIKDSLVLLDASGNGMGGTEIEGILHLYRLETLNLAENGHLRQELSYVVDLVSSLEALRDLDLRGNVVSRMAKYFERAVTRCGDFLATLDGKPVHAQHRSML 801 ES + YLSR+THL QN+GI S++ C L V+YLYDN + ++ L + XXXXXXXXXXXXXXXXXXXXXXXXXXXXX + QRL +G+ E ++ + L +L+ SGN + + + L +L+ L+ + N ++L +V L+S LR LD N + +Y ER + L LDGK + R L Sbjct: 23 ESVEHYLSRLTHLPFQNRGIESIEP---IPPCRQLTVIYLYDNILTKIENLNFAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIENQRLPQGEKLVFEPRTLQCLSHGLEILNVSGNNLDS--LAELSCLEKLQELSASNNS--LEDLRELVQLLSIWPRLRRLDTNRNPLCAKGRYRERLIV-VSTTLEMLDGKQITDNSRQFL 241 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1089.604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1089.604.1 >prot_E-siliculosus-1a_F_contig1089.604.1 ID=prot_E-siliculosus-1a_F_contig1089.604.1|Name=mRNA_E-siliculosus-1a_F_contig1089.604.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=374bp MGSNTGDFSDESSSRASSASRRGTTRELALCSTATTRRRNESDDDYLSRVback to top mRNA from alignment at E-siliculosus-1a_F_contig1089:2762..6664- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1089.604.1 ID=mRNA_E-siliculosus-1a_F_contig1089.604.1|Name=mRNA_E-siliculosus-1a_F_contig1089.604.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3903bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1089:2762..6664- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1089:2762..6664- >mRNA_E-siliculosus-1a_F_contig1089.604.1 ID=mRNA_E-siliculosus-1a_F_contig1089.604.1|Name=mRNA_E-siliculosus-1a_F_contig1089.604.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2244bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1089:2762..6664- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |