mRNA_E-siliculosus-1a_F_contig10889.603.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10889.603.1 vs. uniprot
Match: A0A6H5J8H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H8_9PHAE) HSP 1 Score: 137 bits (345), Expect = 1.110e-34 Identity = 90/130 (69.23%), Postives = 93/130 (71.54%), Query Frame = 1 Query: 1 GGSATAEWDALGTGSGGFGRPLQQRQQPPPRHGVGGGINPYLARRPSACPASASGKDSSDAAPSGXXXXXXTKTEDVQVGVETSRESSSTAAAAADKAWELWPDDGLMPPLPPRKESLWVSRPSPRRFAG 390
GGSA AEWDAL TGSG RRPSAC ASASG SSDAA SGXXXXXX +TEDVQVGVETSRESSSTAAAA DK WELWPDDGLMPPLPPRK+SLWVS+PSPRR AG
Sbjct: 925 GGSAPAEWDALRTGSG---------------------------RRPSACLASASGMGSSDAALSGXXXXXXXRTEDVQVGVETSRESSSTAAAA-DKTWELWPDDGLMPPLPPRKKSLWVSKPSPRRCAG 1026
BLAST of mRNA_E-siliculosus-1a_F_contig10889.603.1 vs. uniprot
Match: D8LRB4_ECTSI (Cell surface protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB4_ECTSI) HSP 1 Score: 128 bits (322), Expect = 1.310e-31 Identity = 78/92 (84.78%), Postives = 81/92 (88.04%), Query Frame = 1 Query: 118 PYLARRPSACPASASG-KDSSDAAPSGXXXXXXTKTEDVQVGVETSRESSSTAAAAADKAWELWPDDGLMPPLPPRKESLWVSRPSPRRFAG 390
P ARRPSACPASASG KDSSD+AP XXXXXX +TEDVQVGVE SRESSST AAA DKAWELWPDD LMPPLPPRK+SLWVSRPSPRR AG
Sbjct: 455 PQQARRPSACPASASGTKDSSDSAPXXXXXXXXMRTEDVQVGVERSRESSSTVAAA-DKAWELWPDDRLMPPLPPRKKSLWVSRPSPRRCAG 545 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10889.603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10889.603.1 >prot_E-siliculosus-1a_F_contig10889.603.1 ID=prot_E-siliculosus-1a_F_contig10889.603.1|Name=mRNA_E-siliculosus-1a_F_contig10889.603.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=149bp GGSATAEWDALGTGSGGFGRPLQQRQQPPPRHGVGGGINPYLARRPSACPback to top mRNA from alignment at E-siliculosus-1a_F_contig10889:1287..2134- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10889.603.1 ID=mRNA_E-siliculosus-1a_F_contig10889.603.1|Name=mRNA_E-siliculosus-1a_F_contig10889.603.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=848bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10889:1287..2134- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10889:1287..2134- >mRNA_E-siliculosus-1a_F_contig10889.603.1 ID=mRNA_E-siliculosus-1a_F_contig10889.603.1|Name=mRNA_E-siliculosus-1a_F_contig10889.603.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=894bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10889:1287..2134- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |