mRNA_E-siliculosus-1a_F_contig10882.601.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10882.601.1 vs. uniprot
Match: A0A6H5JW51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW51_9PHAE) HSP 1 Score: 228 bits (582), Expect = 2.530e-69 Identity = 123/133 (92.48%), Postives = 127/133 (95.49%), Query Frame = 1 Query: 649 GAICEHAAASLEALDKNTVVDATPIFFNGINGCPYAGLTACISQARAKAFLSEVEETLLLGMVAETKDIGVYPLVQLGEWGYAVSERRSRTCELDWAHVKYDKGDGXXXXXXXXXXASRRITAARGLMCKVRI 1047
GAICEHAAASLEALDKNTVVDATPIFFNGINGCPYAGLTACISQARAK FLSEV+ETLL+GMVAE KD+GVY +VQLGEWGYAVSERRSRTCELDWAHVKYDKGDGXXXXXXXX ASRRITAARGLMCK RI
Sbjct: 179 GAICEHAAASLEALDKNTVVDATPIFFNGINGCPYAGLTACISQARAKTFLSEVKETLLVGMVAEAKDVGVYQVVQLGEWGYAVSERRSRTCELDWAHVKYDKGDGXXXXXXXX--ASRRITAARGLMCKARI 309
BLAST of mRNA_E-siliculosus-1a_F_contig10882.601.1 vs. uniprot
Match: A0A6H5KBV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBV3_9PHAE) HSP 1 Score: 229 bits (585), Expect = 4.270e-69 Identity = 114/130 (87.69%), Postives = 120/130 (92.31%), Query Frame = 1 Query: 571 DCHTTLLHQRSVSQTAGANAGVQSATGAICEHAAASLEALDKNTVVDATPIFFNGINGCPYAGLTACISQARAKAFLSEVEETLLLGMVAETKDIGVYPLVQLGEWGYAVSERRSRTCELDWAHVKYDKG 960
+C LLHQRSVSQTAGANAGVQSATGA CEHA ASLE L KNTVVDATPIFF+GINGCPYAGLTACIS ARAKAFLSEVEETLL+GM AE KDIGVYP+VQLGEWGYAVSERRSRTCELDWAHVKY++G
Sbjct: 236 ECKRMLLHQRSVSQTAGANAGVQSATGASCEHATASLETLGKNTVVDATPIFFDGINGCPYAGLTACISPARAKAFLSEVEETLLVGMGAEAKDIGVYPVVQLGEWGYAVSERRSRTCELDWAHVKYEQG 365
BLAST of mRNA_E-siliculosus-1a_F_contig10882.601.1 vs. uniprot
Match: A0A6H5JWX4_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWX4_9PHAE) HSP 1 Score: 209 bits (531), Expect = 9.740e-59 Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = 1 Query: 586 LLHQRSVSQTAGANAGVQSATGAICEHAAASLEALDKNTVVDATPIFFNGINGCPYAGLTACISQARAKAFLSEVEETLLLGMVAETKDIGVYPLVQLGEWGYAVSERR 912
LLHQRSVSQTAGANAGVQSATGAICEHAAASLEALDKNTVVDATPIFFNGINGCPYAGLTACISQARAKAFLSEVEETLL+GMVAE KDIGVYP+VQLGEWGYAVSERR
Sbjct: 2 LLHQRSVSQTAGANAGVQSATGAICEHAAASLEALDKNTVVDATPIFFNGINGCPYAGLTACISQARAKAFLSEVEETLLVGMVAEAKDIGVYPVVQLGEWGYAVSERR 110
BLAST of mRNA_E-siliculosus-1a_F_contig10882.601.1 vs. uniprot
Match: A0A6H5JPP3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP3_9PHAE) HSP 1 Score: 207 bits (527), Expect = 4.310e-57 Identity = 121/150 (80.67%), Postives = 128/150 (85.33%), Query Frame = 1 Query: 589 LHQRSVSQTAGANAGVQSATGAICEHAAASLEALDKNTVVDATPIFFNGINGCPYAGLTACISQARAKAFLSEVEETLLLGMVAETKDIGVYPLVQLGEWGYAVSERRSRTCELDWAHVKYDKGDGXXXXXXXXXXASRRITAARGLMCK 1038
L QRSVS+TAGANAGVQSATG ICEHAAASLEALDKNTVV+ATPIFFNGINGCP+AGLTACISQARAKAFLSEVEETLLLGMVAE KD+GVYP+VQL +WGYAVSERRS DG XXXXXXX ASR+ITAARGLMCK
Sbjct: 3 LRQRSVSRTAGANAGVQSATGGICEHAAASLEALDKNTVVNATPIFFNGINGCPHAGLTACISQARAKAFLSEVEETLLLGMVAEAKDVGVYPVVQLSKWGYAVSERRS---------------DGKXXXXXXX--ASRKITAARGLMCK 135
BLAST of mRNA_E-siliculosus-1a_F_contig10882.601.1 vs. uniprot
Match: D7G6G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G0_ECTSI) HSP 1 Score: 112 bits (279), Expect = 2.320e-27 Identity = 63/69 (91.30%), Postives = 66/69 (95.65%), Query Frame = 1 Query: 832 MVAETKDIGVYPLVQLGEWGYAVSERRSRTCELDWAHVKYDKGDGXXXXXXXXXXASRRITAARGLMCK 1038
MVAE KDIGV+P+VQLGEWGYAVSERRSRTCELDWAHVKYDKGDGXXXXXXXX ASRRITAARGL+CK
Sbjct: 1 MVAEAKDIGVHPVVQLGEWGYAVSERRSRTCELDWAHVKYDKGDGXXXXXXXX--ASRRITAARGLVCK 67
BLAST of mRNA_E-siliculosus-1a_F_contig10882.601.1 vs. uniprot
Match: D7FZU4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZU4_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 3.100e-19 Identity = 47/53 (88.68%), Postives = 48/53 (90.57%), Query Frame = 1 Query: 199 GRAGALLPRVQQGSPTEVLRVPQKHQDVVRVQKLLKENTGGATSQSGIEGTGL 357
G GALLPRVQQGSPTEVLRVPQKHQDVVRVQKLLKENTGGATSQ GI+G G
Sbjct: 2 GVQGALLPRVQQGSPTEVLRVPQKHQDVVRVQKLLKENTGGATSQPGIKGYGF 54
BLAST of mRNA_E-siliculosus-1a_F_contig10882.601.1 vs. uniprot
Match: A0A6H5L044_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L044_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 6.400e-19 Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = -3 Query: 2 WH*G*QLPFLVRVAHRLSRGRSLLQRDQPPLLGYRPAQDVGRRRRH 139
WH G QLPFLVRVAHRLSRG SL+QRDQPPLLGYRPAQDVGRRRRH
Sbjct: 29 WHYGHQLPFLVRVAHRLSRGHSLVQRDQPPLLGYRPAQDVGRRRRH 74
BLAST of mRNA_E-siliculosus-1a_F_contig10882.601.1 vs. uniprot
Match: A0A6H5JPW5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPW5_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 1.100e-16 Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 2 Query: 2 VPASAANVLGGAVAKQGGLVPLQQRAAAGEAVCNPHQERELLPLMPA 142
VPASA NVLGGAVAKQGGLVPLQQRAAAGEAVCNPHQ+REL+PLMPA
Sbjct: 140 VPASATNVLGGAVAKQGGLVPLQQRAAAGEAVCNPHQDRELVPLMPA 186
BLAST of mRNA_E-siliculosus-1a_F_contig10882.601.1 vs. uniprot
Match: A0A6H5JGH9_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH9_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 7.060e-11 Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 1 Query: 637 QSATGAICEHAAASLEALDKNTVVDATPIFFNGINGCPYAG 759
+SATGAICE A ASLEAL KNTVVDATPIFFNGINGCPYAG
Sbjct: 4 RSATGAICEVADASLEALGKNTVVDATPIFFNGINGCPYAG 44 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10882.601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 9 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10882.601.1 >prot_E-siliculosus-1a_F_contig10882.601.1 ID=prot_E-siliculosus-1a_F_contig10882.601.1|Name=mRNA_E-siliculosus-1a_F_contig10882.601.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=353bp GAGVGGQRPGRGGSQAGGAGPAAAASGRGRGGVQPSPGTGVATLNASSLHback to top mRNA from alignment at E-siliculosus-1a_F_contig10882:663..2227- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10882.601.1 ID=mRNA_E-siliculosus-1a_F_contig10882.601.1|Name=mRNA_E-siliculosus-1a_F_contig10882.601.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1565bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10882:663..2227- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10882:663..2227- >mRNA_E-siliculosus-1a_F_contig10882.601.1 ID=mRNA_E-siliculosus-1a_F_contig10882.601.1|Name=mRNA_E-siliculosus-1a_F_contig10882.601.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2118bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10882:663..2227- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |