mRNA_E-siliculosus-1a_F_contig1087.594.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1087.594.1 vs. uniprot
Match: A0A6H5JEE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEE7_9PHAE) HSP 1 Score: 522 bits (1344), Expect = 9.110e-172 Identity = 295/357 (82.63%), Postives = 301/357 (84.31%), Query Frame = 1 Query: 1 GGGSGKSVVADKSGDSIVSDEGPPGIPSLPAANHGETSGKPCDVSRTAAAAAVAAGAVAATKAYGIREKLEEEEDTGGGADPALSPRGAPPPAPFGGMLSGFGCMAPQLSPGKGAARLSPRAGSRLPEIDDXXXXXXXXXXXXXXXXEEVAGRRAPGSCSPLSRPPLNSGPDDGRGERVGQGXXXXXXXXXXXXXXXXXXXTMTPELKPIAEMADSGSFTDSEAGSDVSSCLSSMSGRSGYRVPRDPAALLAAAMEKAGQVAAIPPPSSGSHGRPLSSVQEVPMEGVPLPGLATPEFDDECGLKVHCSTWDSGSTTASTVSPLRAAVSTVEVDTTVVPIPSPAQRPESSDESGEATE 1071
GG S KSVVAD+SGDS+VSD PPG+PSLPAANHGETSGKP VSRTAAAAAVAAGAVAATKAYGIREK +EEEDTGGGADPALSPRGAPP APFGGMLSGFGCMAPQLSPGKG ARLSPRAGSRLPEIDD EVAG+RAPGSCSP SRPPLNSG DGR ERVGQG TMTP+LKPIAEMADSGSFTDSEAGSDVSSCLSSMSGRSGYRVPRDPAALLAAAMEKAGQVAAIPPPSSGSHGRPLSSVQEVPMEGVPLPGLATPE DDECGLKVH S WDSGSTT STVSPLRAAVS V VDTTVVPIPSPAQRPESSDESGE TE
Sbjct: 557 GGSSDKSVVADRSGDSVVSDGRPPGMPSLPAANHGETSGKPYGVSRTAAAAAVAAGAVAATKAYGIREKFDEEEDTGGGADPALSPRGAPPSAPFGGMLSGFGCMAPQLSPGKGGARLSPRAGSRLPEIDDDDSSLAEEEEMEENG--EVAGKRAPGSCSPFSRPPLNSGTGDGRSERVGQGGGSASAVSLEKALALSRSCTMTPDLKPIAEMADSGSFTDSEAGSDVSSCLSSMSGRSGYRVPRDPAALLAAAMEKAGQVAAIPPPSSGSHGRPLSSVQEVPMEGVPLPGLATPESDDECGLKVH-SPWDSGSTTTSTVSPLRAAVSKVGVDTTVVPIPSPAQRPESSDESGEVTE 910
BLAST of mRNA_E-siliculosus-1a_F_contig1087.594.1 vs. uniprot
Match: D7FLC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC6_ECTSI) HSP 1 Score: 453 bits (1166), Expect = 3.070e-142 Identity = 268/308 (87.01%), Postives = 272/308 (88.31%), Query Frame = 1 Query: 1 GGGSGKSVVADKSGDSIVSDEGPPGIPSLPAANHGETSGKPCDVSRTAAAAAVAAGAVAATKAYGIREKLEEEEDTGGGADPALSPRGAPPPAPFGGMLSGFGCMAPQLSPGKGAARLSPRAGSRLPEIDDXXXXXXXXXXXXXXXXEEVAGRRAPGSCSPLSRPPLNSGPDDGRGERVGQGXXXXXXXXXXXXXXXXXXXTMTPELKPIAEMADSGSFTDSEAGSDVSSCLSSMSGRSGYRVPRDPAALLAAAMEKAGQVAAIPPPSSGSHGRPLSSVQEVPMEGVPLPGLATPEFDDECGLKVHCS 924
GG S KSVVADKSGDS+VSDEGPPG+PSLPAANHGETSGKP DVSRTAAAAAVAAGAVAA KAY IREK + EEDTG GAD ALSPRGAPPPAPFGGMLSGFGCMAPQLSPGKGAARLSPRAGSRLPEIDDXXXXXXXXXXXXXXX EEVAGRRAPGSCSPLSRP LNSGPDDGRGERVGQG TMTPELKPIAEMADSGSFTDSEAGSDVSSCLSSMSGRSGYRVPRDPAALLAAAMEKAGQVAAIPPPSSGSHGR LSSVQEVPMEGVPLPGLATPE DDEC LK +
Sbjct: 1327 GGDSDKSVVADKSGDSVVSDEGPPGMPSLPAANHGETSGKPYDVSRTAAAAAVAAGAVAAAKAYDIREKPDGEEDTGEGADLALSPRGAPPPAPFGGMLSGFGCMAPQLSPGKGAARLSPRAGSRLPEIDDXXXXXXXXXXXXXXX-EEVAGRRAPGSCSPLSRPQLNSGPDDGRGERVGQGEASASAVSLEKALDLSRSRTMTPELKPIAEMADSGSFTDSEAGSDVSSCLSSMSGRSGYRVPRDPAALLAAAMEKAGQVAAIPPPSSGSHGRSLSSVQEVPMEGVPLPGLATPEIDDECDLKASAA 1633 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1087.594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1087.594.1 >prot_E-siliculosus-1a_F_contig1087.594.1 ID=prot_E-siliculosus-1a_F_contig1087.594.1|Name=mRNA_E-siliculosus-1a_F_contig1087.594.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=361bp GGGSGKSVVADKSGDSIVSDEGPPGIPSLPAANHGETSGKPCDVSRTAAAback to top mRNA from alignment at E-siliculosus-1a_F_contig1087:23602..24686+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1087.594.1 ID=mRNA_E-siliculosus-1a_F_contig1087.594.1|Name=mRNA_E-siliculosus-1a_F_contig1087.594.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1085bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1087:23602..24686+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1087:23602..24686+ >mRNA_E-siliculosus-1a_F_contig1087.594.1 ID=mRNA_E-siliculosus-1a_F_contig1087.594.1|Name=mRNA_E-siliculosus-1a_F_contig1087.594.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2166bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1087:23602..24686+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |