mRNA_E-siliculosus-1a_F_contig10858.592.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10858.592.1 vs. uniprot
Match: D8LLU0_ECTSI (PKD domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU0_ECTSI) HSP 1 Score: 189 bits (479), Expect = 1.710e-56 Identity = 85/92 (92.39%), Postives = 87/92 (94.57%), Query Frame = 1 Query: 1 MTGNAAVAALRDQYEADLVLLVGYFPNTCGLGWIFNFNEALGFSLMDSICFLNWTQTHEFGHNLGCRHDRDNSNTGMTDYGHGLRYCTGTPQ 276 MTGNAAVAALRD++EADLVLLVGYFPNTCG GWIFNFNEALGFSLMDSICF NWTQTHE GHNLGCRHDRDNSNTGMT YGHGLRYCTG PQ Sbjct: 296 MTGNAAVAALRDEHEADLVLLVGYFPNTCGRGWIFNFNEALGFSLMDSICFSNWTQTHEIGHNLGCRHDRDNSNTGMTAYGHGLRYCTGIPQ 387
BLAST of mRNA_E-siliculosus-1a_F_contig10858.592.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE) HSP 1 Score: 151 bits (382), Expect = 4.500e-40 Identity = 72/135 (53.33%), Postives = 91/135 (67.41%), Query Frame = 1 Query: 1 MTGNAAVAALRDQYEADLVLLVGYFPNTCGLGWIFNFNEALGFSLMDSICFLNWTQTHEFGHNLGCRHDRDNSNTGMTDYGHGLRYCTGTPQFRTVMTY-PNDCSG---------AELINHFSNPDVEYLGQPTG 375 + N+AV LR++Y+ DLV LVGYFP TCGLG+IFN N GFSL+ S CF N++ THE HN+GC HDRDNS T +Y HG RYCTG+ +RT+M+Y N C G +N+FSNP+V YL +PTG Sbjct: 430 LAANSAVNDLRNEYQGDLVQLVGYFPGTCGLGYIFNGNAEFGFSLVGSNCFDNFSHTHEIAHNMGCYHDRDNSET-QDEYRHGYRYCTGSDPYRTIMSYYQNGCGGDPTPEADPIVPQVNYFSNPEVTYLNKPTG 563
BLAST of mRNA_E-siliculosus-1a_F_contig10858.592.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE) HSP 1 Score: 142 bits (358), Expect = 7.490e-37 Identity = 69/135 (51.11%), Postives = 89/135 (65.93%), Query Frame = 1 Query: 1 MTGNAAVAALRDQYEADLVLLVGYFPNTCGLGWIFNFNEALGFSLMDSICFLNWTQTHEFGHNLGCRHDRDNSNTGMTDYGHGLRYCTGTPQFRTVMTY-PNDCSG---------AELINHFSNPDVEYLGQPTG 375 + N+ V LR+QY+ DLV LVGYFP TCGLG+IFN + A GFSL+DS CF N++ THE HN+GC HD++NS+T Y HG RYC G +RT+M+Y N C G +N+FSNP+V YL + TG Sbjct: 250 LAANSNVTDLRNQYQGDLVQLVGYFPGTCGLGYIFNGDAAFGFSLVDSNCFDNFSHTHEIAHNMGCYHDKNNSDT-QHAYRHGWRYCEGADPYRTIMSYYHNGCGGDPTSEDDPIVPRVNYFSNPNVTYLNKSTG 383
BLAST of mRNA_E-siliculosus-1a_F_contig10858.592.1 vs. uniprot
Match: D8LMP2_ECTSI (Peptidyl-Asp metallopeptidase. metallo peptidase. MEROPS family M72 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP2_ECTSI) HSP 1 Score: 109 bits (272), Expect = 1.060e-27 Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = 1 Query: 1 MTGNAAVAALRDQYEADLVLLVGYFPNTCGLGWIFNFNEALGFSLMDSICFLNWTQTHEFGHNLGCRHDRDNSNTGMTD-YGHGLRYCTGT 270 + ++ V LRDQY+ DLV LVGYFP TCGLG++FN N GFSL+ S CF N++ THE HN+GC HDR NS G D + HG RYCTGT Sbjct: 89 LAADSDVDDLRDQYQGDLVQLVGYFPGTCGLGYVFNGNAEYGFSLVGSNCFDNFSHTHEIAHNMGCYHDRLNS--GPQDAFRHGYRYCTGT 177
BLAST of mRNA_E-siliculosus-1a_F_contig10858.592.1 vs. uniprot
Match: D8LC56_ECTSI (Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC56_ECTSI) HSP 1 Score: 103 bits (257), Expect = 1.510e-23 Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 1 Query: 10 NAAVAALRDQYEADLVLLVGYFPNTCGLGWIFNFNEA----LGFSLMDSICFLNWTQTHEFGHNLGCRHDRDNS--NTGMTDYGHGLRYCTGTPQFRTVMTYPNDCSGAELINHFSNPDVEYLGQPTG 375 N V LRD+Y ADLV L+GY+ NTCG+G+ + G+S++ + C N++ HE GHN G H+++N+ + G+ Y + R C +FRT+M Y + C +N FSNPD+ Y Q G Sbjct: 296 NEGVHKLRDEYGADLVQLIGYYLNTCGVGFTMGSPSSGFAQYGYSVVHTNCLSNFSHIHELGHNFGANHNKENAGGSDGVDAYNYAYRNCEVGTKFRTIMAYSSGCPSTPRVNVFSNPDLTYANQRQG 423
BLAST of mRNA_E-siliculosus-1a_F_contig10858.592.1 vs. uniprot
Match: A0A6H5JDN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN0_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 1.050e-20 Identity = 51/144 (35.42%), Postives = 73/144 (50.69%), Query Frame = 1 Query: 10 NAAVAALRDQYEADLVLLVGYFPNTCGLGWIFNFNEAL--------------------GFSLMDSICFLNWTQTHEFGHNLGCRHDRDN--SNTGMTDYGHGLRYCTGTPQFRTVMTYPNDCSGAELINHFSNPDVEYLGQPTG 375 N V LRD+Y ADLV L+GY+ NTCG+G + AL G+S++ + C N++ HE GHN G H+++N + G+ Y + R C +FRT+M Y + C +N FSNPD+ Y Q G Sbjct: 272 NEGVHKLRDEYGADLVQLIGYYLNTCGVGSKVSSFFALYPARTHRFTMGTPSSGFAQYGYSVVHTNCLSNFSHIHELGHNFGANHNKENVGGSGGVDAYNYAYRNCDVGTKFRTIMAYSSGCPSTPRVNVFSNPDLTYANQRQG 415
BLAST of mRNA_E-siliculosus-1a_F_contig10858.592.1 vs. uniprot
Match: A0A2G2A1R6_9BACT (Ig-like domain-containing protein n=1 Tax=Phycisphaera sp. TaxID=2030824 RepID=A0A2G2A1R6_9BACT) HSP 1 Score: 94.7 bits (234), Expect = 3.830e-20 Identity = 49/121 (40.50%), Postives = 73/121 (60.33%), Query Frame = 1 Query: 19 VAALRDQYEADLVLLVGYFPNTCGLGWIFNFNEALGFSLMDSICFL-NWTQTHEFGHNLGCRHDRDNSNTGMTDYGHGLRY-CTGTPQFRTVMTYPNDCSGAELINHFSNPDVEYLGQPTG 375 V +LRD + ADLV ++ N CG+G++ F+ A GF++ D+ C + N T HE GHN+G HDR+N+ + Y +G R+ T +R+VM Y S + +FSNPD+ Y+G PTG Sbjct: 294 VHSLRDTHAADLVAMLVNSFNACGVGYLAPFDAAFGFTVTDTGCAVGNLTFAHEIGHNMGATHDRNNAGGAVFSYAYGWRWNSTNGVLYRSVMAY----SPGSRVPYFSNPDINYIGTPTG 410
BLAST of mRNA_E-siliculosus-1a_F_contig10858.592.1 vs. uniprot
Match: A0A2G6HSX6_9BACT (Uncharacterized protein n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2G6HSX6_9BACT) HSP 1 Score: 87.8 bits (216), Expect = 1.050e-17 Identity = 56/141 (39.72%), Postives = 73/141 (51.77%), Query Frame = 1 Query: 19 VAALRDQYEADLVLLVGYFPN--------TCGLGWIFNFNEA-----LGFSLMD--SICFLNW-TQTHEFGHNLGCRHDRDNS-----NTGMTDYGHGLRYCTGTPQFRTVMTYPNDCSGAEL-INHFSNPDVEYLGQPTG 375 + ALRDQY AD V L+ N TCGL W+ N + +++++ +IC + T HE GHN+GC HDR+ + N G Y +G Y QF TVM Y + C G INHFSNP+V Y G PTG Sbjct: 275 IEALRDQYGADQVTLINKVTNGEISGGGITCGLAWLITRNNIPSGARISYAVIEDGAICGTDTITYAHEVGHNMGCAHDRNTTQLQDGNGGKFSYSYG--YQDPPNQFVTVMAYAHTCPGTCFYINHFSNPEVNYEGAPTG 413
BLAST of mRNA_E-siliculosus-1a_F_contig10858.592.1 vs. uniprot
Match: A0A1V5PI50_9CHLR (DUF1080 domain-containing protein n=1 Tax=Chloroflexi bacterium ADurb.Bin360 TaxID=1852861 RepID=A0A1V5PI50_9CHLR) HSP 1 Score: 87.4 bits (215), Expect = 1.430e-17 Identity = 50/125 (40.00%), Postives = 69/125 (55.20%), Query Frame = 1 Query: 19 VAALRDQYEADLVLLVGYFPNTCGLGWIFNFN----EALGFSLMDSICFLNWTQ-THEFGHNLGCRHDRDNSNT-GMTDYGHGLRYCTGTPQFRTVMTYPNDCSGAELINHFSNPDVEYLGQPTG 375 V +LR+ Y ADLV L+ CG+G++ N EA F+++ C + HE GHN+GC+HDR N++ G Y +G Y FRT+M Y N +NH+SNP+V Y GQPTG Sbjct: 282 VHSLRNTYNADLVTLIVNSGGNCGIGYLMNSVSASFEAYAFTVVSRDCATGYYSFAHEMGHNMGCQHDRANASVPGAYSYAYG--YQVPNRAFRTIMAY-NCTPSCPRVNHWSNPEVSYGGQPTG 403
BLAST of mRNA_E-siliculosus-1a_F_contig10858.592.1 vs. uniprot
Match: UPI000CD3BB5A (peptidase M72 family protein n=1 Tax=Pseudomonas putida TaxID=303 RepID=UPI000CD3BB5A) HSP 1 Score: 84.3 bits (207), Expect = 1.640e-16 Identity = 51/125 (40.80%), Postives = 70/125 (56.00%), Query Frame = 1 Query: 10 NAAVAALRDQYEADLVLLVGYFPNTCGLGWIFNFNEALGFSLMDSICFLNWTQTHEFGHNLGCRHDRDNSNT-GMTDYGHGLRYCTGTPQFRTVMTYPNDCSGAEL--INHFSNPDVEYLGQPTG 375 AAVA +RDQ ADLV + P+ CG+G++ N + FS++ + ++ HE GHNLG H+ + G Y +G RY TGTP+FRT M+Y DCSG I + SNP + Y G G Sbjct: 329 GAAVAPIRDQLRADLVTMYSTNPSYCGMGFV-NAGRSTAFSVISCLSSMS----HELGHNLGANHNWEEGQAEGNPKYQYGFRY-TGTPRFRTQMSY--DCSGGACPKIGYHSNPRLTYEGIAIG 445 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10858.592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10858.592.1 >prot_E-siliculosus-1a_F_contig10858.592.1 ID=prot_E-siliculosus-1a_F_contig10858.592.1|Name=mRNA_E-siliculosus-1a_F_contig10858.592.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=125bp MTGNAAVAALRDQYEADLVLLVGYFPNTCGLGWIFNFNEALGFSLMDSICback to top mRNA from alignment at E-siliculosus-1a_F_contig10858:5..2049+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10858.592.1 ID=mRNA_E-siliculosus-1a_F_contig10858.592.1|Name=mRNA_E-siliculosus-1a_F_contig10858.592.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2045bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10858:5..2049+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10858:5..2049+ >mRNA_E-siliculosus-1a_F_contig10858.592.1 ID=mRNA_E-siliculosus-1a_F_contig10858.592.1|Name=mRNA_E-siliculosus-1a_F_contig10858.592.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=750bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10858:5..2049+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |