mRNA_E-siliculosus-1a_F_contig1085.590.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1085.590.1 vs. uniprot
Match: D7G7T5_ECTSI (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7T5_ECTSI) HSP 1 Score: 233 bits (593), Expect = 9.510e-70 Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 3 Query: 30 MAARIEYSEKYQDDSFEYRHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPVLEQEAKKAYQQDLADKMDPGTNVAPMAM 365
MAARIEYSEKYQDDSFEYRHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPVLEQEAKKAYQQ+LADKMDPGTNVAPMAM
Sbjct: 1 MAARIEYSEKYQDDSFEYRHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPVLEQEAKKAYQQELADKMDPGTNVAPMAM 112
BLAST of mRNA_E-siliculosus-1a_F_contig1085.590.1 vs. uniprot
Match: A0A7S2BBH9_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BBH9_9STRA) HSP 1 Score: 176 bits (447), Expect = 1.600e-48 Identity = 80/110 (72.73%), Postives = 94/110 (85.45%), Query Frame = 3 Query: 24 GVMAARIEYSEKYQDDSFEYRHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPVLEQEAKKAYQQDLADKMDPGTNVA 353
+ ARIEYSEKYQDD +EYRHVILPK+LAK LPK+R+L+EQEWRG+GVQQSRGW HYAIHRPEPHILLF+RPLGTDPV+GK+DP LE+EAK AYQ +L P +V+
Sbjct: 17 SMAVARIEYSEKYQDDKYEYRHVILPKELAKNLPKARLLSEQEWRGIGVQQSRGWAHYAIHRPEPHILLFRRPLGTDPVTGKIDPALEREAKDAYQNNLELNQAPMPDVS 126
BLAST of mRNA_E-siliculosus-1a_F_contig1085.590.1 vs. uniprot
Match: A0A7S2BWV6_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BWV6_9STRA) HSP 1 Score: 169 bits (428), Expect = 6.080e-46 Identity = 78/98 (79.59%), Postives = 88/98 (89.80%), Query Frame = 3 Query: 30 MAARIEYSEKYQDDSFEYRHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPVLEQEAKKAYQQDLA 323
MA+RIEYSEKY DD+FEYRHVILPK+LAK LPK+R+L EQEWRG+GVQQSRGW HYAIHRPEPHILLF+RPLGTDPV+GKVD LE++AK AY LA
Sbjct: 20 MASRIEYSEKYTDDAFEYRHVILPKELAKNLPKARLLGEQEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVDVELERDAKDAYNASLA 117
BLAST of mRNA_E-siliculosus-1a_F_contig1085.590.1 vs. uniprot
Match: W7T145_9STRA (Cyclin-dependent kinases regulatory subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T145_9STRA) HSP 1 Score: 162 bits (410), Expect = 1.150e-43 Identity = 72/97 (74.23%), Postives = 86/97 (88.66%), Query Frame = 3 Query: 30 MAARIEYSEKYQDDSFEYRHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPVLEQEAKKAYQQDL 320
MA+RIEYSEKY DD+ EYRHVILPK++A+ LPK R+LTE EWRG+GVQQSRGW HYAIHRPEPHILLF+RPLGTDPV+GKV+ LE+EAK+ Y + +
Sbjct: 1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESM 97
BLAST of mRNA_E-siliculosus-1a_F_contig1085.590.1 vs. uniprot
Match: A0A7S3MEH0_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MEH0_9STRA) HSP 1 Score: 160 bits (405), Expect = 5.730e-43 Identity = 72/95 (75.79%), Postives = 84/95 (88.42%), Query Frame = 3 Query: 39 RIEYSEKYQDDSFEYRHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPVLEQEAKKAYQQDLA 323
+IEYSEKYQD +EYRHVILPKD A+ LPK+R LTE EWR +GVQQSRGW HYA H+PEPHILLF+RPLGTDPVSG+VDP LE+EA++ YQQ+LA
Sbjct: 5 QIEYSEKYQDGKYEYRHVILPKDSARNLPKNRTLTELEWRNIGVQQSRGWEHYACHKPEPHILLFRRPLGTDPVSGEVDPELEREAREKYQQELA 99
BLAST of mRNA_E-siliculosus-1a_F_contig1085.590.1 vs. uniprot
Match: A0A6S9ANL1_9STRA (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9ANL1_9STRA) HSP 1 Score: 160 bits (405), Expect = 5.730e-43 Identity = 73/93 (78.49%), Postives = 85/93 (91.40%), Query Frame = 3 Query: 33 AARIEYSEKYQDDSFEYRHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPVLEQEAKKAYQ 311
A+RIEYSEKY D + EYRHVILPKDLAK LPK+R+L+E EWRG+GVQQSRGWMHYAIHRPEPHILLF+RPLGTDP SG+VDP LE+EA++ Y+
Sbjct: 4 ASRIEYSEKYADTANEYRHVILPKDLAKTLPKNRLLSESEWRGIGVQQSRGWMHYAIHRPEPHILLFRRPLGTDPQSGQVDPELEREAREEYK 96
BLAST of mRNA_E-siliculosus-1a_F_contig1085.590.1 vs. uniprot
Match: A0A7S1CQT6_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQT6_9STRA) HSP 1 Score: 160 bits (406), Expect = 6.240e-43 Identity = 71/96 (73.96%), Postives = 83/96 (86.46%), Query Frame = 3 Query: 30 MAARIEYSEKYQDDSFEYRHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPVLEQEAKKAYQQD 317
+A RIEYSEKYQDD FEYRHVILPK+LAK LPK R+L E EWRG+GVQQSRGW+HYA HRPEPH+LLF+RPLGTDP +GK+D VL +EA+ Y +D
Sbjct: 5 IAKRIEYSEKYQDDKFEYRHVILPKELAKSLPKERLLLEPEWRGIGVQQSRGWVHYACHRPEPHVLLFRRPLGTDPTTGKIDKVLAREARDQYYKD 100
BLAST of mRNA_E-siliculosus-1a_F_contig1085.590.1 vs. uniprot
Match: A0A7S1UE56_9STRA (Cyclin-dependent kinases regulatory subunit n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UE56_9STRA) HSP 1 Score: 160 bits (405), Expect = 1.520e-42 Identity = 71/100 (71.00%), Postives = 87/100 (87.00%), Query Frame = 3 Query: 33 AARIEYSEKYQDDSFEYRHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPVLEQEAKKAYQQDLADKM 332
A+RIEYSEKY D+ FEYRHVILPK+LAK +PK+R+L EQEWR LGVQQSRGW HYAIHRPEPHILLF+RPLGTDP +G+VD L++EAK++Y + L + +
Sbjct: 35 ASRIEYSEKYNDEDFEYRHVILPKELAKSIPKTRILAEQEWRNLGVQQSRGWEHYAIHRPEPHILLFRRPLGTDPTTGRVDADLQREAKESYLRTLRENL 134
BLAST of mRNA_E-siliculosus-1a_F_contig1085.590.1 vs. uniprot
Match: A0A835YHQ2_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHQ2_9STRA) HSP 1 Score: 157 bits (398), Expect = 5.250e-42 Identity = 71/97 (73.20%), Postives = 85/97 (87.63%), Query Frame = 3 Query: 30 MAARIEYSEKYQDDSFEYRHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPVLEQEAKKAYQQDL 320
M RIEYS+KYQD ++EYRHVILPK+LA+GLP +R+L E+EWR LGVQQSRGW+HYAIHRPEPHILLF RPLGTDP+SG+VDP E+EAK+ Y + L
Sbjct: 1 MGTRIEYSDKYQDSNWEYRHVILPKELARGLPNTRLLQEEEWRLLGVQQSRGWVHYAIHRPEPHILLFHRPLGTDPLSGQVDPEKEREAKEGYAEHL 97
BLAST of mRNA_E-siliculosus-1a_F_contig1085.590.1 vs. uniprot
Match: A0A6H5L2I6_9PHAE (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2I6_9PHAE) HSP 1 Score: 157 bits (397), Expect = 7.010e-42 Identity = 71/96 (73.96%), Postives = 85/96 (88.54%), Query Frame = 3 Query: 39 RIEYSEKYQDDSFEYRHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPVLEQEAKKAYQQDLAD 326
RI+YSEKY D SFEYRHVILPK+ AK LP+SR+LTE EWR LGVQQSRGW HYA+H PEPHILLF+RPLGT+PV+G+VDP LE+EAK+ Y ++L+D
Sbjct: 3 RIDYSEKYVDGSFEYRHVILPKETAKILPQSRLLTEDEWRHLGVQQSRGWQHYAVHTPEPHILLFRRPLGTNPVTGRVDPELEREAKEKYAEELSD 98 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1085.590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1085.590.1 >prot_E-siliculosus-1a_F_contig1085.590.1 ID=prot_E-siliculosus-1a_F_contig1085.590.1|Name=mRNA_E-siliculosus-1a_F_contig1085.590.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=113bp MAARIEYSEKYQDDSFEYRHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSback to top mRNA from alignment at E-siliculosus-1a_F_contig1085:18634..25059- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1085.590.1 ID=mRNA_E-siliculosus-1a_F_contig1085.590.1|Name=mRNA_E-siliculosus-1a_F_contig1085.590.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6426bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1085:18634..25059- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1085:18634..25059- >mRNA_E-siliculosus-1a_F_contig1085.590.1 ID=mRNA_E-siliculosus-1a_F_contig1085.590.1|Name=mRNA_E-siliculosus-1a_F_contig1085.590.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=678bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1085:18634..25059- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |