Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1085.589.1 vs. uniprot
Match: A0A6H5KV56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV56_9PHAE) HSP 1 Score: 54.3 bits (129), Expect = 7.730e-5 Identity = 94/111 (84.68%), Postives = 94/111 (84.68%), Query Frame = 1 Query: 16 RAKVEGLAQAQVVSASPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEARHDERQAHAGLPTGVKEGGDVG 348
RAKVEGLAQ QVVSASPV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEARHDERQAH LP GVKEGGDVG
Sbjct: 989 RAKVEGLAQGQVVSASPVTAEPLAQQASVPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEARHDERQAHVALPIGVKEGGDVG 1099
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Start | 0 |
Stop | 0 |
Cds size | 714 |
Model size | 716 |
Exons | 2 |
Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622927586.0089161-CDS-E-siliculosus-1a_F_contig1085:14609..14702 | 1622927586.0089161-CDS-E-siliculosus-1a_F_contig1085:14609..14702 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1085 14610..14702 + |
1696318598.697587-CDS-E-siliculosus-1a_F_contig1085:14609..14702 | 1696318598.697587-CDS-E-siliculosus-1a_F_contig1085:14609..14702 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1085 14610..14702 + |
1622927586.0226555-CDS-E-siliculosus-1a_F_contig1085:15236..15857 | 1622927586.0226555-CDS-E-siliculosus-1a_F_contig1085:15236..15857 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1085 15237..15857 + |
1696318598.7050245-CDS-E-siliculosus-1a_F_contig1085:15236..15857 | 1696318598.7050245-CDS-E-siliculosus-1a_F_contig1085:15236..15857 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1085 15237..15857 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1085.589.1 >prot_E-siliculosus-1a_F_contig1085.589.1 ID=prot_E-siliculosus-1a_F_contig1085.589.1|Name=mRNA_E-siliculosus-1a_F_contig1085.589.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=238bp
QQQQQRAKVEGLAQAQVVSASPVTAEPLAQQASVPVCPSPTAGTSDAAID NGGVSTGRVGSVSGGPKAGTSGKGGNGRSRASGSRSRGGRKGEARHDERQ AHAGLPTGVKEGGDVGGGGSRGGLVATPPPAQQQQPQAQELTKKGGRGQQ QRRQREQHQQHQQHQQHQQQQPQPPPKGRSSAKPQQPSSTTTATATTTIP AKAKKKAPALVVETPVSGAWADEIPSPTPQRQRQQQQQ back to topmRNA from alignment at E-siliculosus-1a_F_contig1085:14610..15858+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1085.589.1 ID=mRNA_E-siliculosus-1a_F_contig1085.589.1|Name=mRNA_E-siliculosus-1a_F_contig1085.589.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1249bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1085:14610..15858+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) CAGCAGCAACAACAGCGAGCGAAAGTAGAGGGCTTGGCTCAGGCTCAGGT
GGTGTCGGCGTCGCCCGTGACAGCAGAGCCGTTGGCACAGCAGGTGAGGC
ACTGTGGTACTACTGTAGCCGGTTAGGAAGAGTGATGGTTTCAATGGTTT
TTCAATCGACATCAAAGGTGTGAGAAACGCAGCACGCAGCAACGTGTCCT
TGACTGCCGTACTGTAGCTGTAGCTGTAGTCAACGTTCCGCCCATCACCT
CCTTGGCGGGTGGTTGTCATTGCGTGTTTGGTCTGGCACCTTTGTGTACC
GACACCGCAGTCTTCTGTGCGAATGAAGCTGTTCGCCGTACATGAGTGTC
AGTGGGGGTTTGGAATGGGCCGTTGCAGACAGTTTTCCGCCAACAAGAGG
TAGAGGTACAAAAGTGTTCTCTGCCGGTGGTGCATGAACAAACGTTTCCG
GGGTACCCCCCCGCCCCACATGTTGCAGAGTTCTCTTCTGACAACATATG
ATGGTACCCTCCAGCTACCCCCTGTATTCTAAGCAGTGCGCGGTCAATGG
CCAAGTTGCTCAAGAGAATAAGTTCTCGTCAACCGCCGTTGTTGTTGCGT
TTGGATGTGTAATCTGTGTCGCTTCAGGCCTCTGTCCCGGTTTGCCCTTC
CCCTACCGCGGGAACGAGCGATGCCGCCATCGACAACGGAGGGGTATCGA
CCGGGCGCGTGGGATCAGTGTCAGGGGGCCCGAAGGCTGGTACCAGCGGG
AAGGGGGGGAACGGACGGAGTCGCGCATCGGGCTCGCGTTCACGGGGAGG
ACGGAAGGGGGAGGCTAGGCACGACGAGAGGCAAGCACACGCGGGGCTGC
CGACAGGGGTCAAGGAAGGTGGTGACGTCGGCGGCGGTGGAAGTCGCGGT
GGTTTGGTAGCGACGCCCCCGCCGGCACAGCAGCAGCAGCCCCAGGCCCA
AGAGCTTACGAAGAAGGGGGGGAGGGGTCAGCAACAGCGGCGCCAACGGG
AGCAGCACCAGCAGCACCAGCAGCACCAGCAGCACCAGCAGCAGCAGCCG
CAGCCCCCGCCGAAAGGTAGATCGAGCGCCAAGCCTCAGCAGCCGTCGTC
GACGACAACAGCAACAGCAACAACAACAATCCCCGCGAAAGCAAAGAAGA
AAGCCCCTGCTCTTGTGGTCGAGACCCCGGTGTCTGGAGCCTGGGCGGAC
GAGATACCTTCCCCCACACCGCAAAGACAGCGACAGCAGCAGCAGCAGC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1085:14610..15858+ >mRNA_E-siliculosus-1a_F_contig1085.589.1 ID=mRNA_E-siliculosus-1a_F_contig1085.589.1|Name=mRNA_E-siliculosus-1a_F_contig1085.589.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1428bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1085:14610..15858+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) CAGCAGCAACAACAGCGAGCGAAAGTAGAGGGCTTGGCTCAGGCTCAGGT GGTGTCGGCGTCGCCCGTGACAGCAGAGCCGTTGGCACAGCAGCAGCAGC AACAACAGCGAGCGAAAGTAGAGGGCTTGGCTCAGGCTCAGGTGGTGTCG GCGTCGCCCGTGACAGCAGAGCCGTTGGCACAGCAGGCCTCTGTCCCGGT TTGCCCTTCCCCTACCGCGGGAACGAGCGATGCCGCCATCGACAACGGAG GGGTATCGACCGGGCGCGTGGGATCAGTGTCAGGGGGCCCGAAGGCTGGT ACCAGCGGGAAGGGGGGGAACGGACGGAGTCGCGCATCGGGCTCGCGTTC ACGGGGAGGACGGAAGGGGGAGGCTAGGCACGACGAGAGGCAAGCACACG CGGGGCTGCCGACAGGGGTCAAGGAAGGTGGTGACGTCGGCGGCGGTGGA AGTCGCGGTGGTTTGGTAGCGACGCCCCCGCCGGCACAGCAGCAGCAGCC CCAGGCCCAAGAGCTTACGAAGAAGGGGGGGAGGGGTCAGCAACAGCGGC GCCAACGGGAGCAGCACCAGCAGCACCAGCAGCACCAGCAGCACCAGCAG CAGCAGCCGCAGCCCCCGCCGAAAGGTAGATCGAGCGCCAAGCCTCAGCA GCCGTCGTCGACGACAACAGCAACAGCAACAACAACAATCCCCGCGAAAG CAAAGAAGAAAGCCCCTGCTCTTGTGGTCGAGACCCCGGTGTCTGGAGCC TGGGCGGACGAGATACCTTCCCCCACACCGCAAAGACAGCGACAGCAGCA GCAGCAGGCCTCTGTCCCGGTTTGCCCTTCCCCTACCGCGGGAACGAGCG ATGCCGCCATCGACAACGGAGGGGTATCGACCGGGCGCGTGGGATCAGTG TCAGGGGGCCCGAAGGCTGGTACCAGCGGGAAGGGGGGGAACGGACGGAG TCGCGCATCGGGCTCGCGTTCACGGGGAGGACGGAAGGGGGAGGCTAGGC ACGACGAGAGGCAAGCACACGCGGGGCTGCCGACAGGGGTCAAGGAAGGT GGTGACGTCGGCGGCGGTGGAAGTCGCGGTGGTTTGGTAGCGACGCCCCC GCCGGCACAGCAGCAGCAGCCCCAGGCCCAAGAGCTTACGAAGAAGGGGG GGAGGGGTCAGCAACAGCGGCGCCAACGGGAGCAGCACCAGCAGCACCAG CAGCACCAGCAGCACCAGCAGCAGCAGCCGCAGCCCCCGCCGAAAGGTAG ATCGAGCGCCAAGCCTCAGCAGCCGTCGTCGACGACAACAGCAACAGCAA CAACAACAATCCCCGCGAAAGCAAAGAAGAAAGCCCCTGCTCTTGTGGTC GAGACCCCGGTGTCTGGAGCCTGGGCGGACGAGATACCTTCCCCCACACC GCAAAGACAGCGACAGCAGCAGCAGCAG back to top
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