mRNA_E-siliculosus-1a_F_contig10844.585.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10844.585.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE) HSP 1 Score: 365 bits (938), Expect = 1.950e-119 Identity = 191/218 (87.61%), Postives = 199/218 (91.28%), Query Frame = -3 Query: 1 HAEAVKTALEELRPSSLPDMAAVPAGALELPRSSYVERAAVQEVADGLTAPEDRRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRLGRGAKNSLLALLQGLAREMGATPTDVPHMTPHVLDSLEQVKQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLDLGDMTEEEALELLRKTSGTVGQPGDDVR 654 H ++ AL L P SLPDMAAVPAGALELP SSYVERAAVQEVADGLT+PED RAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVR+GRGAK+SLLALLQGLAREMGA TD PH PHVLD LEQVKQHLAAVASTGT PRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVV VPAGRL++GDMTEEEALELLRK+SG VGQPGDDVR Sbjct: 186 HHQSFLAALPSLLPPSLPDMAAVPAGALELPCSSYVERAAVQEVADGLTSPEDPRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAREMGAARTDAPHTVPHVLDGLEQVKQHLAAVASTGTFPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVVVPAGRLEVGDMTEEEALELLRKSSGAVGQPGDDVR 403
BLAST of mRNA_E-siliculosus-1a_F_contig10844.585.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 366 bits (939), Expect = 2.100e-114 Identity = 189/218 (86.70%), Postives = 199/218 (91.28%), Query Frame = -3 Query: 1 HAEAVKTALEELRPSSLPDMAAVPAGALELPRSSYVERAAVQEVADGLTAPEDRRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRLGRGAKNSLLALLQGLAREMGATPTDVPHMTPHVLDSLEQVKQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLDLGDMTEEEALELLRKTSGTVGQPGDDVR 654 H ++ AL L P SLPDMAAVP GALELP SSYVERAAVQEVADGLT PE+ RAPYTVVGMGGGGKSVLASA VRKPSVREHFRGGIFWVR+GRGAK+SLLALLQGLA ++GA PTD PH PHVLD LEQV+QHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVG+PAGRL+LGDMTEEEALELLRKTSGTVGQPGDDVR Sbjct: 240 HHQSFLAALPSLLPPSLPDMAAVPTGALELPSSSYVERAAVQEVADGLTTPEESRAPYTVVGMGGGGKSVLASAAVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLAWDVGAAPTDAPHGVPHVLDRLEQVQQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGLPAGRLELGDMTEEEALELLRKTSGTVGQPGDDVR 457
BLAST of mRNA_E-siliculosus-1a_F_contig10844.585.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI) HSP 1 Score: 362 bits (928), Expect = 9.570e-112 Identity = 189/218 (86.70%), Postives = 199/218 (91.28%), Query Frame = -3 Query: 1 HAEAVKTALEELRPSSLPDMAAVPAGALELPRSSYVERAAVQEVADGLTAPEDRRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRLGRGAKNSLLALLQGLAREMGATPTDVPHMTPHVLDSLEQVKQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLDLGDMTEEEALELLRKTSGTVGQPGDDVR 654 H ++ AL L P SLPDMAAVPAGALELP SSYVERAAVQEVADGLTAPE+ RAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVR+GRGAK+SLLALLQGLAR++GA PTD P P VLDSLEQV+QHLAAV STGTS RLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRL+LGD+TEEEALELLRKTSG VGQPGDDVR Sbjct: 223 HHQSFLAALPSLLPPSLPDMAAVPAGALELPSSSYVERAAVQEVADGLTAPEESRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRVGRGAKSSLLALLQGLARDVGAAPTDAPCGVPRVLDSLEQVRQHLAAVTSTGTSQRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLELGDVTEEEALELLRKTSGAVGQPGDDVR 440
BLAST of mRNA_E-siliculosus-1a_F_contig10844.585.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI) HSP 1 Score: 342 bits (877), Expect = 4.590e-105 Identity = 187/245 (76.33%), Postives = 199/245 (81.22%), Query Frame = -3 Query: 1 KSIGEALDAIDRDVVRQFTAIAAKSAIHAEAVKTALEELRPSSLPDMAAVPAGALELPRSSYVERAAVQEVADGLTAPEDRRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRLGRGAKNSLLALLQGLAREMGATPTDVPHMTPHVLDSLEQVKQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLDLGDMTEEEALELLRKTSGTVGQPGDDVR 735 K + + L I DV R AIAAK ++ P SLPDMA VP GALELP SSYVERAAVQEVADGLT PE+ R PYTVVG+GGGGKSVLASAVVR PSVREHFRGGI WVR+GRGAKNSLL LLQGLARE+GA PTD PH PH LDSLEQV+QHLAAVAST SPRLVVLDDVWEREVVDAFVPLGFK+LLTTRDRS+V PAGRL+LGDMTEEEALELLRKTSGTV PGDDVR Sbjct: 7 KKLEKKLQEIGGDVCRVVDAIAAKRIF---------TDILPPSLPDMAEVPVGALELPHSSYVERAAVQEVADGLTNPEEPRTPYTVVGIGGGGKSVLASAVVRMPSVREHFRGGISWVRVGRGAKNSLLPLLQGLAREVGAAPTDAPHGVPHALDSLEQVQQHLAAVASTRNSPRLVVLDDVWEREVVDAFVPLGFKLLLTTRDRSIVCDPAGRLELGDMTEEEALELLRKTSGTV-DPGDDVR 241
BLAST of mRNA_E-siliculosus-1a_F_contig10844.585.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI) HSP 1 Score: 341 bits (875), Expect = 3.680e-104 Identity = 185/212 (87.26%), Postives = 190/212 (89.62%), Query Frame = -3 Query: 1 ALEELRPSSLPDMAAVPAGALELPRSSYVERAAVQEVADGLTAPEDRRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRLGRGAKNSLLALLQGLAREMGATPTDVPHMTPHVLDSLEQVKQHLAAV-ASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLDLGDMTEEEALELLRKTSGTVGQPGDDVR 633 AL LRP L DMAAVPAGAL+LPR YVERAAVQEVADGLTAPE+ RAPYTVVG+GGGGKSVLASAVVRKPSVREHFRGGI WVR+GRGAKNSLL LLQGLAREMG PTD PH P VLDSLEQV+QHLAAV ASTGTSPRLVVLDDVWEREVVDA VPLGFKVLLTTRD SVV VPA RLDLGDMTEEEALELLRKTSGTVGQPGD VR Sbjct: 205 ALPSLRPPRLLDMAAVPAGALDLPRG-YVERAAVQEVADGLTAPEEPRAPYTVVGLGGGGKSVLASAVVRKPSVREHFRGGISWVRVGRGAKNSLLPLLQGLAREMGVAPTDAPHAVPQVLDSLEQVQQHLAAVVASTGTSPRLVVLDDVWEREVVDALVPLGFKVLLTTRDWSVVVVPARRLDLGDMTEEEALELLRKTSGTVGQPGDYVR 415
BLAST of mRNA_E-siliculosus-1a_F_contig10844.585.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE) HSP 1 Score: 328 bits (842), Expect = 1.620e-101 Identity = 180/254 (70.87%), Postives = 200/254 (78.74%), Query Frame = -3 Query: 1 KRVNRGTQHKSIGEALDAIDRDVVRQFTAIAAKSAIHAEAVKTALEELRPSSLPDMAAVPAGALELPRSSYVERAAVQEVADGLTAPEDRRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRLGRGAKNSLLALLQGLAREMGATPTDVPHMTPHVLDSLEQVKQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLDLGDMTEEEALELLRKTSGTVGQPGDDVR 762 K + R ++HK + + L ID DV R AI+AK A T L P SLPDMA VPA A+ L S YVERAAV++VADG+T PE+ RAPYTV GMGGGGKSVLASAVVRK SVREHFRGGIFW+ +GRGAK LL LLQGL +MGA PTD PH PHVLDSLEQV++HL AVASTGTSPRLVVLDDVWEREVVDA +PLGFKVL+TTRDRSVVGVP L+LGDMTEEEALELL KTSGTVG+PGD VR Sbjct: 90 KSITRCSRHKELEKQLQGIDGDVRRVLDAISAKGA-----TGTVL----PPSLPDMAKVPAEAVALSDSLYVERAAVRKVADGITNPEEPRAPYTVFGMGGGGKSVLASAVVRKSSVREHFRGGIFWLTVGRGAKKRLLPLLQGLTGDMGAAPTDTPHGVPHVLDSLEQVQRHLGAVASTGTSPRLVVLDDVWEREVVDALLPLGFKVLVTTRDRSVVGVPTRCLELGDMTEEEALELLLKTSGTVGRPGDSVR 334
BLAST of mRNA_E-siliculosus-1a_F_contig10844.585.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE) HSP 1 Score: 306 bits (783), Expect = 6.070e-98 Identity = 160/199 (80.40%), Postives = 174/199 (87.44%), Query Frame = -3 Query: 1 MAAVPAGALELPRSSYVERAAVQEVADGLTAPEDRRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRLGRGAKNSLLALLQGLAREMGATPTDVPHMTPHVLDSLEQVKQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLDLGDMTEEEALELLRKTSGTVGQPGDDVR 597 MAAVPAGAL LP+S YVERAAVQEVADGL PE+ RAPY VVGMGGGGK++L SAVVRK +VREHFRGG+FW+R+GR AKNSLL+LLQGLAREM A PTD PH PHVL+SLEQVKQHLA VAS GTSPRLVVLDDVWEREVVDA + LG KVL+TTRDRSVVGV G L+LGDMTEEEALELL KTS TVGQPG +VR Sbjct: 1 MAAVPAGALTLPQS-YVERAAVQEVADGLIKPEEPRAPYAVVGMGGGGKTMLVSAVVRKSNVREHFRGGVFWMRVGRHAKNSLLSLLQGLAREMSAAPTDTPHGVPHVLESLEQVKQHLATVASAGTSPRLVVLDDVWEREVVDALLSLGLKVLVTTRDRSVVGVSGGLLELGDMTEEEALELLLKTSRTVGQPGHEVR 198
BLAST of mRNA_E-siliculosus-1a_F_contig10844.585.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI) HSP 1 Score: 290 bits (742), Expect = 3.700e-87 Identity = 153/216 (70.83%), Postives = 170/216 (78.70%), Query Frame = -3 Query: 1 EAVKTALEELRPSSLPDMAAVPAGALELPRSSYVERAAVQEVADGLTAPEDRRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRLGRGAKNSLLALLQGLAREMGATPTDVPHMTPHVLDSLEQVKQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLDLGDMTEEEALELLRKTSGTVGQPGDDVR 648 +A T + ++ P +LP AAVP GAL LPRS YVER VQE L PE APY +VGMGGGGK+VLASA+VRK SV EHFRGGIFW+ +GRGA SLL LQGLAREMGA PTD PH PHV DSLEQV QHLAAV S G+SPRLVVLDDVWEREVV AF+ +G KVL+TTRDRS+VGVP G L+LGDM E+EALELL KTSGTVGQPGD VR Sbjct: 220 KAFSTMIRDVLPPTLPQRAAVPTGALALPRS-YVERPGVQEAMGDLMDPEKALAPYMIVGMGGGGKTVLASALVRKSSVLEHFRGGIFWMEMGRGANKSLLHRLQGLAREMGAAPTDAPHGVPHVFDSLEQVMQHLAAVVSRGSSPRLVVLDDVWEREVVAAFLGVGLKVLVTTRDRSIVGVPGGLLELGDMAEDEALELLWKTSGTVGQPGDGVR 434
BLAST of mRNA_E-siliculosus-1a_F_contig10844.585.1 vs. uniprot
Match: A0A6H5KQU6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQU6_9PHAE) HSP 1 Score: 226 bits (575), Expect = 1.430e-65 Identity = 132/209 (63.16%), Postives = 153/209 (73.21%), Query Frame = -3 Query: 34 EAVKTALEEL----RPSSLPDMAAVPAGALELPRSSYVERAAVQEVADGLTAPEDRRAPYTVVGMGGGGKSVLASAVVRKPSVREHFRGGIFWVRLGRGAKNSLLALLQGLAREMGATPTDVPHMTPHVLDSLEQVKQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLDLGDMTEEEALELLRKTS 648 E V++ LEE+ SSL + AAVPAGA LP YV R+ V++ +GL E+ AP+ VVGM G GK+VL SAVVR VREHF GGIFW+R+GRGAK SLL L+Q LAREMGA H P+VLD LEQV QH+AAVASTGTSPRLVVLDDVWEREVVDA + L KVL+TTRD SVVGVP RL+ DM E+EA+ELL KTS Sbjct: 72 EHVESKLEEIDREVARSSLSNRAAVPAGAHGLPHY-YVARSVVRKAVEGLINAEEPSAPFVVVGMSGAGKTVLVSAVVRHLRVREHFHGGIFWMRVGRGAKTSLLPLMQTLAREMGA------HGVPYVLDGLEQVGQHVAAVASTGTSPRLVVLDDVWEREVVDALLRLKLKVLVTTRDHSVVGVPGTRLEPEDMAEDEAMELLLKTS 273
BLAST of mRNA_E-siliculosus-1a_F_contig10844.585.1 vs. uniprot
Match: A0A6H5JLW6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW6_9PHAE) HSP 1 Score: 202 bits (514), Expect = 8.760e-58 Identity = 106/148 (71.62%), Postives = 119/148 (80.41%), Query Frame = -3 Query: 25 MGGGGKSVLASAVVRKPSVREHFRGGIFWVRLGRGAKNSLLALLQGLAREMGATPTDVPHMTPHVLDSLEQVKQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLDLGDMTEEEALELLRKTSGTV 468 MGGGG++VL SAVVR+ SV E+FRGGIF + +GRGAKN LL LLQGLAREMGA P PH P LDSLE V QHL V STGTSPRLVVLDDV EREVV+A +PLG K+++TTRDRSVVGVP G L++GDMTEEEALELL SG V Sbjct: 1 MGGGGETVLVSAVVRELSVLEYFRGGIFLMSVGRGAKNRLLPLLQGLAREMGAAPAHAPHGNPGDLDSLEHVMQHLTTVVSTGTSPRLVVLDDVLEREVVEALLPLGLKLVVTTRDRSVVGVPGGCLEVGDMTEEEALELLMLASGAV 148 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10844.585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10844.585.1 >prot_E-siliculosus-1a_F_contig10844.585.1 ID=prot_E-siliculosus-1a_F_contig10844.585.1|Name=mRNA_E-siliculosus-1a_F_contig10844.585.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=207bp PDIVSRLTHSPARLPEQLQRLFLRHVSQIQASGRHTNNRPVTRGQQHLESback to top mRNA from alignment at E-siliculosus-1a_F_contig10844:1473..2236+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10844.585.1 ID=mRNA_E-siliculosus-1a_F_contig10844.585.1|Name=mRNA_E-siliculosus-1a_F_contig10844.585.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=764bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10844:1473..2236+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10844:1473..2236+ >mRNA_E-siliculosus-1a_F_contig10844.585.1 ID=mRNA_E-siliculosus-1a_F_contig10844.585.1|Name=mRNA_E-siliculosus-1a_F_contig10844.585.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1242bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10844:1473..2236+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |