mRNA_E-siliculosus-1a_F_contig1083.581.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1083.581.1 vs. uniprot
Match: A0A6H5JIZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ9_9PHAE) HSP 1 Score: 2207 bits (5719), Expect = 0.000e+0 Identity = 1416/1771 (79.95%), Postives = 1447/1771 (81.71%), Query Frame = 1 Query: 538 MMSTLSQRELNMQMRLLSPGEQGIIDHVLETFAAQVDGKSMRTRDFFNLMDSNRDNVLTRSELKEALVNRQLVLRDDQLTHLMAFFDVHGHGYVTLGDLHDGLRTFRAACHRTKIHGQSTRLPRPQPRPPPDSTAVTRLQSALLAPLTLFSAQAPVEGQGKHQRYTTNASEKRILEQEAGINFLDITDPEISSLADFLMDAEKAGGRPHGGLPSNPADHIPTTDAQQSKALCPLPLVMAALESAASRAPGCINRDGQQTGSIRGPGAAAVPCSAARVLWILRGLQRVWRQKDRRRKAKTLIQESADEFTDEKLSAAVSLFDVDGQGHIDLEDVMTVFRNARVEKFVQGRLPAAAIPSLVAIGRHLESRKITAHDFVQDAATSTIIDSSEPFGRPRDPKPIPKRKRAAKRDQAQTATTAQLGALLFSELQLDAEQRNLVLECIEEDGLVSGANLAGVVRRARGELAHRKLERLEQHQGSMVDGGRCWSSETDSQVSELS-STCSIISPPRFRPQAGAAPTAEEGMLAPLQHKHQRDGFNQSDASLILELFVKEGGGLRNLTGKSVASLWRGLKRRGRGVHAYEDGRSAARRLRQLLGSRDMKPHQWFATLDPTAESSAPSDEGSSMERRVAMSSIIQGAQALGGTTRKGPPGEANTVHTASGDKGATDSLEGTLSSNDGSYSSTGQTAGKNYKAQRWTKAQLSALARHLDPCGEGSITQEVFQEGLCVCRGGRGVYPDAAHLAAARRLEDALRDDGCRDVCGMFHSLAGEGRGGGDLVEYVRQMGDYAKRSARELEAAARQKRMGRALLERETEAQRISTHKSALCERVSRPENACALRTIQKLDELMSLQGRRLVVEFHQADTNRSGGVDPTELKKVMKNLVQPCSLLRFERKRRXXXXXAAAATSQNAERWKEDFMEKMEALDKSKASNFLDVISTALRNRRWQIRDVFRDVDKGKSGALGVNDLLENTHHALGLKLDRGEAAALISMLDTNGDKSIQCEELE----------------------------------------------LALRLYRRYGWERHRWSRRKPFHEEFPSLSCLFRRTPRAEGGGAGPQQQQRNPALPRDTKVNRGDIVTALVRLRGGSSGGAVGGNRGRGQLLPAHGPNVQRRRVLLRAVRKVAHCCQTAGVRTAPALLATLAYFDFGPVDEARRKAGRMRAVDLWHWLRLLSAPTDDPGGSAVGGSFKNNANRTKGAHGQRRKKDVLCGRNKSICGFGEGGGGRGGAHKTVDEMVSGRLLDAEETALLLDALELRTRVQEARDAPATGATEDGPIVSVPAFWDLLVEHVPGLWDRELQERLEAEEVERQAQALRSRQSAAALTIQGAARQRQARHIPFLVRDXXXXXXXXXXXXXXXXXXXXXXXXSECAWPHNTLHLKQVRLDRIKSNKAATHIQAMERGRIARHHAAAERAARTAAXXXXXXXXXXXXELEESARRLAAATEERNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------AEIAALDAAIAARQAKMAEEVQPGAGAADQGRGGWRKKSVVGARGVHGLAGLQVQVPPNDNA 5511
M STLSQRELNMQMRLLSPGEQGIIDHVLETFAAQVDGKSMRTRD FNLMDSNRDNVLTRSELKEALVNRQLVLRD+QLTHL+AFFDVHGHGYVTLGDLHD LRTFRA HRTKIHGQSTRLPRPQPRPPPDSTAVTRLQSALLAPLTLFSAQAPVEGQ KHQRYT NASEKRILEQEAGI+FLDITDPEISSLADFLMDAEK GGRPHGGLPSNP DHIP TDA Q AL PLPLVMAALESAASRAPGCIN+DGQQTG IRGPGAAAV CSAARVLWILRGLQRVWRQ+DR RKAKTLIQESADEFTDEKLSAAV LFDVD QGHIDLEDVMTVFR ARV+KFV+GRLPAAAIPSLVAIGRHLESRKI+AHDFVQDAA STI+D SEP G RD KP PKRKRAAKRD QTATTAQLGALLFSELQLDAEQRNLVLECIEEDGLVSGANLAG VRRARGELAHRKLERLEQ Q SMVD GRC SSET SQVSE++ S CSIISPPRFR QAG APTAEEGMLAPLQHKHQRDGFNQSDASLILELFVKEGGGLRNLTGKS A LWRGLKRRGRGVHA+E+GRSAARRL QLLGSRD+KP QWFATLDPTAESSAPSDEGS MERRVAMSSI+QG QAL GTTR GPPGEANTVHTAS D+GATDSLEGTLSSNDGSYSSTGQTAGKN KAQRWTKAQLS L RHLDPCGEGSITQEVFQEGLCVCRG RG YPDAAHLAAARRLEDALRDDGCRDVCGMFHSLAGEGRGGGDLV TIQKLDELMSLQGRRLVVEFHQADTNRSGGVDPTELKKVMKNLVQPCSLLRFERKRR AAA TSQNAERWK+ FMEKMEALDKSKASNFLD+ISTALRNRRWQIRDVFRDVDKGKSGALGV+DLLENTH ALGLKLDRGEAAAL+SMLDTNGDKSIQCEELE LALRLYRRYGWERHRWSRRKPFHEEFPSLSCLFRRT RAEG GAG QQQQRNPALPRDTKVNRGDIVTALVRLRGGSSG AVGGNRGRGQLLPA+GPN+QRRRVLL+AVRKVA+CCQTAGVRTAPALLATLA+FDFGPVDEARRKAGRMRAVDLWHWLRLLSAPTDDPGGS +GGSF +NANRTKG HGQRRKKDVLCGRNKSI GFG+ GGGRGGAHKTVDEMVSGRLLDAEETALLLDALELRTRVQEARDAPATGATEDGP+VSVPAFWDLLVEHVPGLWDRELQERLEAEEV RLDRIKS+KAAT IQAMERGRIARHHAAAERAARTAAXXXXXXXXXXXXELEESARRLAAATEERNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AEIAALDAAI ARQAKMAEEV+PGA ADQGRGGWRKKSVVGAR V GLAGLQVQVPPNDNA
Sbjct: 1 MTSTLSQRELNMQMRLLSPGEQGIIDHVLETFAAQVDGKSMRTRDLFNLMDSNRDNVLTRSELKEALVNRQLVLRDEQLTHLLAFFDVHGHGYVTLGDLHDCLRTFRAVRHRTKIHGQSTRLPRPQPRPPPDSTAVTRLQSALLAPLTLFSAQAPVEGQRKHQRYTKNASEKRILEQEAGISFLDITDPEISSLADFLMDAEKKGGRPHGGLPSNPVDHIPPTDAHQPNALRPLPLVMAALESAASRAPGCINQDGQQTGGIRGPGAAAVQCSAARVLWILRGLQRVWRQEDRHRKAKTLIQESADEFTDEKLSAAVGLFDVDSQGHIDLEDVMTVFRKARVDKFVRGRLPAAAIPSLVAIGRHLESRKISAHDFVQDAAASTIVDPSEPCGHKRDLKPTPKRKRAAKRDNTQTATTAQLGALLFSELQLDAEQRNLVLECIEEDGLVSGANLAGGVRRARGELAHRKLERLEQQQ-SMVDDGRCRSSETGSQVSEVTGSACSIISPPRFRRQAGVAPTAEEGMLAPLQHKHQRDGFNQSDASLILELFVKEGGGLRNLTGKSAARLWRGLKRRGRGVHAHENGRSAARRLLQLLGSRDIKPLQWFATLDPTAESSAPSDEGSFMERRVAMSSIVQGVQALDGTTRTGPPGEANTVHTASDDEGATDSLEGTLSSNDGSYSSTGQTAGKNDKAQRWTKAQLSDLVRHLDPCGEGSITQEVFQEGLCVCRGDRGAYPDAAHLAAARRLEDALRDDGCRDVCGMFHSLAGEGRGGGDLVG------------------------------------------------------------TIQKLDELMSLQGRRLVVEFHQADTNRSGGVDPTELKKVMKNLVQPCSLLRFERKRRRERQQAAAVTSQNAERWKKGFMEKMEALDKSKASNFLDIISTALRNRRWQIRDVFRDVDKGKSGALGVDDLLENTHLALGLKLDRGEAAALVSMLDTNGDKSIQCEELEVRMQRTRVLSTVESSGKVYLADHPLDRFPSCSTLSSPPLRPTIQQQLALRLYRRYGWERHRWSRRKPFHEEFPSLSCLFRRTTRAEGDGAGLQQQQRNPALPRDTKVNRGDIVTALVRLRGGSSGDAVGGNRGRGQLLPAYGPNIQRRRVLLKAVRKVANCCQTAGVRTAPALLATLAHFDFGPVDEARRKAGRMRAVDLWHWLRLLSAPTDDPGGSFMGGSFNDNANRTKGVHGQRRKKDVLCGRNKSIYGFGDCGGGRGGAHKTVDEMVSGRLLDAEETALLLDALELRTRVQEARDAPATGATEDGPLVSVPAFWDLLVEHVPGLWDRELQERLEAEEV---------------------------------------------------------------------------RLDRIKSHKAATRIQAMERGRIARHHAAAERAARTAAXXXXXXXXXXXXELEESARRLAAATEERNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEIAALDAAITARQAKMAEEVRPGAAGADQGRGGWRKKSVVGARCVQGLAGLQVQVPPNDNA 1635
BLAST of mRNA_E-siliculosus-1a_F_contig1083.581.1 vs. uniprot
Match: D8LRB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB6_ECTSI) HSP 1 Score: 2102 bits (5447), Expect = 0.000e+0 Identity = 1360/1653 (82.27%), Postives = 1380/1653 (83.48%), Query Frame = 1 Query: 571 MQMRLLSPGEQGIIDHVLETFAAQVDGKSMRTRDFFNLMDSNRDNVLTRSELKEALVNRQLVLRDDQLTHLMAFFDVHGHGYVTLGDLHDGLRTFRAACHRTKIHGQSTRLPRPQPRPPPDSTAVTRLQSALLAPLTLFSAQAPVEGQGKHQRYTTNASEKRILEQEAGINFLDITDPEISSLADFLMDAEKAGGRPHGGLPSNPADHIPTTDAQQSKALCPLPLVMAALESAASRAPGCINRDGQQTGSIRGPGAAAVPCSAARVLWILRGLQRVWRQKDRRRKAKTLIQESADEFTDEKLSAAVSLFDVDGQGHIDLEDVMTVFRNARVEKFVQGRLPAAAIPSLVAIGRHLESRKITAHDFVQDAATSTIIDSSEPFGRPRDPKPIPKRKRAAKRDQAQTATTAQLGALLFSELQLDAEQRNLVLECIEEDGLVSGANLAGVVRRARGELAHRKLERLEQHQGSMVDGGRCWSSETDSQVSELS-STCSIISPPRFRPQAGAAPTAEEGMLAPLQHKHQRDGFNQSDASLILELFVKEGGGLRNLTGKSVASLWRGLKRRGRGVHAYEDGRSAARRLRQLLGSRDMKPHQWFATLDPTAESSAPSDEGSSMERRVAMSSIIQGAQALGGTTRKGPPGEANTVHTASGDKGATDSLEGTLSSNDGSYSSTGQTAGKNYKAQRWTKAQLSALARHLDPCGEGSITQEVFQEGLCVCRGGRGVYPDAAHLAAARRLEDALRDDGCRDVCGMFHSLAGEGRGGGDLVEYVRQMGDYAKRSARELEAAARQKRMGRALLERETEAQRISTHKSALCERVSRPENACALRTIQKLDELMSLQGRRLVVEFHQADTNRSGGVDPTELKKVMKNLVQPCSLLRFERKRRXXXXXAAAATSQNAERWKEDFMEKMEALDKSKASNFLDVISTALRNRRWQIRDVFRDVDKGKSGALGVNDLLENTHHALGLKLDRGEAAALISMLDTNGDKSIQCEELELALRLYRRYGWERHRWSRRKPFHEEFPSLSCLFRRTPRAEGGGAGPQQQQRNPALPRDTKVNRGDIVTALVRLRGGSSGGAVGGNRGRGQLLPAHGPNVQRRRVLLRAVRKVAHCCQTAGVRTAPALLATLAYFDFGPVDEARRKAGRMRAVDLWHWLRLLSAPTDDPGGSAVGGSFKNNANRTKGAHGQRRKKDVLCGRNKSICGFG-EGGGGRGGAHKTVDEMVSGRLLDAEETALLLDALELRTRVQEARDAPATGATEDGPIVSVPAFWDLLVEHVPGLWDRELQERLEAEE---VERQAQALRSRQSAAALTIQGAARQRQARHIPFLVRDXXXXXXXXXXXXXXXXXXXXXXXXSECAWPHNTLHLKQVRLDRIKSNKAATHIQAMERGRIARHHAAAERAARTAAXXXXXXXXXXXXELEESARRLAAATEERNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEIAALDAAIAARQAKMAEEVQPGAGAADQGRGGWRKKSVVGARGVHGLAGLQVQVPPNDNAA 5514
MQMRLLSPGEQGIIDHVLETFAAQVDGKSMRTRDFFNLMDSNRDNVLTRSELKEALVNRQLVLRDDQLTHLMAF DVHGHGYVTLGDLHDGLR FRAA HRTKIHGQSTRLPRPQPRPP DSTAVTRLQSALLAPLTLFSAQAPVEGQGKHQRY NASEKRILEQEAGINFLDITDPEISSLADFLMDAEKAGGRP GGLPSNPADHIPTTDAQQSKAL PLPL+MAALESAASRAPGCINRDGQQTG IRGPGAAAVPCSAARVLWILRGLQRVWRQKDRRRKAKTLIQESADEFTDEKLS AVSLFDVDGQGHIDL+DVMTVFRNARV+KFV+GRLPAAAIPSLVAIGRHLESRKITAHDFVQDAATSTI+ SSEP PKRKR AKRDQ QTATTAQLGALLFSELQLDA+QRNLVLECIEEDGLVSGAN+AG VRRARGELAHRKLERLEQ QG +VDGGRCWSSET SQVSE+S STCSIISPPRFRPQAGAAPTAEEGMLAPLQHKHQRDGFNQSDASLIL LFVKEGGGLRNLTGKS ASLWRGLKRRGRGVHA EDGRSAARRLRQLL SRDMKPH+WFATL PTAESSAPSDE SSMERRV MSSIIQG QALGGTTR GPPGEANTVHTAS D+ ATDSLEGTLSSNDGSYSST QTAGKNYKAQR T+QKLDELMSLQGRRLVVEFHQADTNRSGGVDPTELKKVMKNL+QPCSLLRFERKRR AAAATSQNAERWK DFMEKMEALDKSKASNFLDVISTALRNRRWQIRDVFRDVDKGKSGALGVNDLLENTH ALGLKLDRGEAAAL+SMLDTNGDKSI CEELELALRLYRRYGWERHRWSRRKPFHEEFPSLSCLFRRTPRAEGGGAG QQQQRNPALPRDTKVNRGDIVTALVRLRG SSGGAVGGNRGRGQLLPAHGPNVQRRRVLLRAVRKVAHCCQTAGVRTAPALLATLAYFDFGPVDEARRKAGRMRAVDLWHWLRLLSAP +D GGS VGGS NNANRTKG HGQRRKKDVLCGRNKSI GFG RGGAHKTVDEMVSGRLLDAEETALLLDALELRTRVQEARDAPATGATEDGPIVSVPAFWDLLVEHVPGLWDRELQERLEAEE V R +A ++ AA T+Q A R+RQ LH KQVRLDRIKSNKAAT IQAMERGRIARHHAAAE AAR AAXXXXXXXXXXXXELEESARRLAAATEERNA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AEIAALDAAIAARQAKM EE QPGAGAADQGRGGWRKKSVVGARGV GLAGLQVQVPPNDNAA
Sbjct: 1 MQMRLLSPGEQGIIDHVLETFAAQVDGKSMRTRDFFNLMDSNRDNVLTRSELKEALVNRQLVLRDDQLTHLMAFLDVHGHGYVTLGDLHDGLRNFRAARHRTKIHGQSTRLPRPQPRPPLDSTAVTRLQSALLAPLTLFSAQAPVEGQGKHQRYKKNASEKRILEQEAGINFLDITDPEISSLADFLMDAEKAGGRPQGGLPSNPADHIPTTDAQQSKALRPLPLIMAALESAASRAPGCINRDGQQTGGIRGPGAAAVPCSAARVLWILRGLQRVWRQKDRRRKAKTLIQESADEFTDEKLSVAVSLFDVDGQGHIDLQDVMTVFRNARVDKFVRGRLPAAAIPSLVAIGRHLESRKITAHDFVQDAATSTIVHSSEP---------TPKRKRDAKRDQTQTATTAQLGALLFSELQLDAKQRNLVLECIEEDGLVSGANVAGAVRRARGELAHRKLERLEQQQG-VVDGGRCWSSETGSQVSEISGSTCSIISPPRFRPQAGAAPTAEEGMLAPLQHKHQRDGFNQSDASLILGLFVKEGGGLRNLTGKSAASLWRGLKRRGRGVHACEDGRSAARRLRQLLESRDMKPHRWFATLGPTAESSAPSDERSSMERRVEMSSIIQGVQALGGTTRTGPPGEANTVHTASDDERATDSLEGTLSSNDGSYSSTAQTAGKNYKAQR-----------------------------------------------------------------------------------------------------------------------------------------------TVQKLDELMSLQGRRLVVEFHQADTNRSGGVDPTELKKVMKNLLQPCSLLRFERKRRRERQEAAAATSQNAERWKGDFMEKMEALDKSKASNFLDVISTALRNRRWQIRDVFRDVDKGKSGALGVNDLLENTHLALGLKLDRGEAAALVSMLDTNGDKSIHCEELELALRLYRRYGWERHRWSRRKPFHEEFPSLSCLFRRTPRAEGGGAGLQQQQRNPALPRDTKVNRGDIVTALVRLRGSSSGGAVGGNRGRGQLLPAHGPNVQRRRVLLRAVRKVAHCCQTAGVRTAPALLATLAYFDFGPVDEARRKAGRMRAVDLWHWLRLLSAPAEDSGGSVVGGSCNNNANRTKGVHGQRRKKDVLCGRNKSIYGFGGXXXXXRGGAHKTVDEMVSGRLLDAEETALLLDALELRTRVQEARDAPATGATEDGPIVSVPAFWDLLVEHVPGLWDRELQERLEAEEARRVVRDERAAAEEKAKAATTVQKAVRRRQ-------------------------------------------LHQKQVRLDRIKSNKAATRIQAMERGRIARHHAAAEGAARRAAXXXXXXXXXXXXELEESARRLAAATEERNAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEIAALDAAIAARQAKMTEEAQPGAGAADQGRGGWRKKSVVGARGVQGLAGLQVQVPPNDNAA 1457 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1083.581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1083.581.1 >prot_E-siliculosus-1a_F_contig1083.581.1 ID=prot_E-siliculosus-1a_F_contig1083.581.1|Name=mRNA_E-siliculosus-1a_F_contig1083.581.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1839bp MHHAPAVGCTADTHSLRAARQLYGGASDQRPTGSAANTPPCYYHNQQEAGback to top mRNA from alignment at E-siliculosus-1a_F_contig1083:25451..34235+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1083.581.1 ID=mRNA_E-siliculosus-1a_F_contig1083.581.1|Name=mRNA_E-siliculosus-1a_F_contig1083.581.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8785bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1083:25451..34235+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1083:25451..34235+ >mRNA_E-siliculosus-1a_F_contig1083.581.1 ID=mRNA_E-siliculosus-1a_F_contig1083.581.1|Name=mRNA_E-siliculosus-1a_F_contig1083.581.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=11034bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1083:25451..34235+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |