mRNA_E-siliculosus-1a_F_contig1083.579.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1083.579.1 vs. uniprot
Match: A0A6H5JMR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR6_9PHAE) HSP 1 Score: 340 bits (872), Expect = 1.140e-115 Identity = 169/172 (98.26%), Postives = 171/172 (99.42%), Query Frame = 2 Query: 35 MQALTACAFAGSGVTREESVALDKVKPTLFERLGQDTIEGISALFYDRVFDDEEWFRSIFSASTKREAVQNQADFLVERLGGPKLYTKRKGKHYRLIHRHSPYDLNPKSAARWLEHMEAAIDASEGVDAESKRLLMAYFSHMAFFLVAGKDMSNPSNLVDYHNKMAESCPKI 550
MQALTACAFAGSGVTREESVALDKVKP+LFERLGQDTIEGISALFYDRVFDDEEWFRSIFSASTKREAVQNQADFLVERLGGPKLYTKRKGKHYRLIHRHSPYDLNPKSAARWLEHMEAAIDAS GVDAESKRLLMA+FSHMAFFLVAGKDMSNPSNLVDYHNKMAESCPKI
Sbjct: 1 MQALTACAFAGSGVTREESVALDKVKPSLFERLGQDTIEGISALFYDRVFDDEEWFRSIFSASTKREAVQNQADFLVERLGGPKLYTKRKGKHYRLIHRHSPYDLNPKSAARWLEHMEAAIDASGGVDAESKRLLMAFFSHMAFFLVAGKDMSNPSNLVDYHNKMAESCPKI 172
BLAST of mRNA_E-siliculosus-1a_F_contig1083.579.1 vs. uniprot
Match: UPI001FB16E89 (two-on-two hemoglobin-3 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB16E89) HSP 1 Score: 154 bits (389), Expect = 1.180e-42 Identity = 80/169 (47.34%), Postives = 118/169 (69.82%), Query Frame = 2 Query: 35 MQALTACAFAGSGVTREESVALDKVKPTLFERLGQDTIEGISALFYDRVFDDE-EWFRSIFSASTKREAVQNQADFLVERLGGPKLYTKRKGKHYRLIHRHSPYDLNPKSAARWLEHMEAAIDASEGVDAESKRLLMAYFSHMAFFLVAGKDMSNPSNLVDYHNKMAES 538
MQ+L A SGV + ++ A+D++ LFE+LG+ T +S FY+RV+DDE EWFRSIF+ S+K +A+QNQ +F ++R+GGP LY++RKG H LI RH P+ + ++A RWL+HM+ A+D++ +D++SK +M +F H AFFLVAG +M NP+ V K A S
Sbjct: 1 MQSLQQKASEWSGVDQTDAFAIDEIN--LFEKLGKQTFINLSTHFYNRVYDDEQEWFRSIFANSSKEDAIQNQYEFFIQRMGGPPLYSERKG-HPALIGRHRPFPVTHEAAERWLQHMQQALDSTADIDSDSKTKMMNFFRHTAFFLVAGNEMKNPNQGVPPPCKHATS 166
BLAST of mRNA_E-siliculosus-1a_F_contig1083.579.1 vs. uniprot
Match: A0A7S1GAZ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GAZ3_9STRA) HSP 1 Score: 154 bits (390), Expect = 4.660e-42 Identity = 79/153 (51.63%), Postives = 109/153 (71.24%), Query Frame = 2 Query: 35 MQALTACAFAGSGVTREESVALDKVKPTLFERLGQDTIEGISALFYDRVFDD-EEWFRSIFSASTKREAVQNQADFLVERLGGPKLYTKRKGKHYRLIHRHSPYDLNPKSAARWLEHMEAAIDASEGVDAESKRLLMAYFSHMAFFLVAGKDM 490
MQAL A +GVT EE+ ALD+V +FERLG+D +S FY+RV+DD E WFR IF+ S K +A+QNQ +F ++R+GGP LY+ RKG H LI RH +D++P +A RWL HMEAA+DA+ +D +S++ + A+ H A+FLVAG+DM
Sbjct: 62 MQALQEAASRNAGVTSEEAFALDEVN--IFERLGKDVFVKLSTEFYNRVYDDGEAWFRDIFAGSKKEDAIQNQYEFFIQRMGGPPLYSTRKG-HPALIGRHRTFDVSPAAARRWLTHMEAALDATPEIDGDSRKRMWAFLRHTAWFLVAGQDM 211
BLAST of mRNA_E-siliculosus-1a_F_contig1083.579.1 vs. uniprot
Match: D8T7E2_SELML (Uncharacterized protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T7E2_SELML) HSP 1 Score: 150 bits (380), Expect = 1.650e-41 Identity = 75/153 (49.02%), Postives = 113/153 (73.86%), Query Frame = 2 Query: 35 MQALTACAFAGSGVTREESVALDKVKPTLFERLGQDTIEGISALFYDRVF-DDEEWFRSIFSASTKREAVQNQADFLVERLGGPKLYTKRKGKHYRLIHRHSPYDLNPKSAARWLEHMEAAIDASEGVDAESKRLLMAYFSHMAFFLVAGKDM 490
MQ+L A SGV+++++ +D++ L+++LG +T +S FY+RV+ DDEEWFRSIF+ S+K A+QNQ +F ++R+GGP LY++RKG H LI RH PY + ++A RW+EHM AA+D+ E +DA+SK+ ++ +F H AFFLVAGK+M
Sbjct: 1 MQSLQDRASELSGVSQDDAFEIDEIN--LYKKLGHETFVKLSTNFYNRVYADDEEWFRSIFANSSKDAAIQNQYEFFIQRMGGPPLYSRRKG-HPALIGRHGPYPVTERAAERWIEHMTAALDSVEEIDADSKKRMLKFFRHTAFFLVAGKEM 150
BLAST of mRNA_E-siliculosus-1a_F_contig1083.579.1 vs. uniprot
Match: A9TSV7_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TSV7_PHYPA) HSP 1 Score: 150 bits (378), Expect = 5.030e-41 Identity = 79/160 (49.38%), Postives = 108/160 (67.50%), Query Frame = 2 Query: 35 MQALTACAFAGSGVTREESVALDKVKPTLFERLGQDTIEGISALFYDRVF-DDEEWFRSIFSASTKREAVQNQADFLVERLGGPKLYTKRKGKHYRLIHRHSPYDLNPKSAARWLEHMEAAIDASEGVDAESKRLLMAYFSHMAFFLVAGKDMSNPSNLV 511
MQAL A SGV E++ A+D V L+E+LG DT +S FY+ V+ DD++WFRSIF+ STK +A+QNQ +F ++R+GGP LY RKG LI RH PY + ++AARWL HM+ A+D S +D +SK + +F H AFFLVAGK+++N LV
Sbjct: 1 MQALNRQASCMSGVAHEDATAIDNVN--LYEKLGFDTFVKLSTNFYNEVYNDDQQWFRSIFANSTKDDAIQNQYEFFIQRMGGPPLYAHRKGSTA-LIARHGPYPITERAAARWLFHMKTALDKSPEIDLDSKTRMFNFFKHTAFFLVAGKELTNHHRLV 157
BLAST of mRNA_E-siliculosus-1a_F_contig1083.579.1 vs. uniprot
Match: H6U807_WOLAU (Truncated hemoglobin n=1 Tax=Wolffia australiana TaxID=161112 RepID=H6U807_WOLAU) HSP 1 Score: 149 bits (375), Expect = 8.920e-41 Identity = 78/158 (49.37%), Postives = 106/158 (67.09%), Query Frame = 2 Query: 35 MQALTACAFAGSGVTREESVALDKVKPTLFERLGQDTIEGISALFYDRVFDDEE-WFRSIFSASTKREAVQNQADFLVERLGGPKLYTKRKGKHYRLIHRHSPYDLNPKSAARWLEHMEAAIDASEGVDAESKRLLMAYFSHMAFFLVAGKDMSNPSN 505
MQ+L A SGV ++ ++D+ LF RLG T +S FYDRVF DE+ WFRSIF S K +A+QNQ +F V+R+GGP LY++RKG H LI RH PY + ++A RWL HME A+DA+ G+D +S+ +M +F H AFFLVAG + NP++
Sbjct: 1 MQSLQQKAAEWSGVASADAFSIDETN--LFHRLGLQTFVDLSTAFYDRVFADEQLWFRSIFGESKKEDAIQNQYEFFVQRMGGPPLYSQRKG-HPALIGRHRPYPVTHQAAERWLHHMEQALDATPGIDPDSRIKMMNFFRHTAFFLVAGDKLKNPAD 155
BLAST of mRNA_E-siliculosus-1a_F_contig1083.579.1 vs. uniprot
Match: A0A0U9HKG8_KLENI (Hemoglobin-like protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HKG8_KLENI) HSP 1 Score: 149 bits (376), Expect = 9.120e-41 Identity = 79/165 (47.88%), Postives = 109/165 (66.06%), Query Frame = 2 Query: 35 MQALTACAFAGSGVTREESVALDKVKPTLFERLGQDTIEGISALFYDRVFDDEE-WFRSIFSASTKREAVQNQADFLVERLGGPKLYTKRKGKHYRLIHRHSPYDLNPKSAARWLEHMEAAIDASEGVDAESKRLLMAYFSHMAFFLVAGKDMSNPSNLVDYHNK 526
MQ+L A SGV +E+ +D V L+ERLG +S FY RV+DD+E WFR IF+ ST+ A QNQ +F ++RLGGP LY++RKG H LI RH PY + ++A RWLEHM+ A+D + G+D +S++ L +F H A+FLVAGK++ N + LV Y K
Sbjct: 1 MQSLQEQASQKSGVPLDEAFQVDAVN--LYERLGHQVFIDLSTNFYTRVYDDKETWFRDIFANSTREHATQNQYEFFIQRLGGPPLYSQRKG-HPALIGRHGPYAVTERAAQRWLEHMDEALDETAGIDEDSRQRLRNFFRHTAYFLVAGKELVNRNRLVGYGGK 162
BLAST of mRNA_E-siliculosus-1a_F_contig1083.579.1 vs. uniprot
Match: A0A1S3BCI0_CUCME (two-on-two hemoglobin-3 isoform X2 n=7 Tax=Cucurbitaceae TaxID=3650 RepID=A0A1S3BCI0_CUCME) HSP 1 Score: 148 bits (374), Expect = 1.920e-40 Identity = 78/155 (50.32%), Postives = 108/155 (69.68%), Query Frame = 2 Query: 35 MQALTACAFAGSGVTREESVALDKVKPTLFERLGQDTIEGISALFYDRVFDD-EEWFRSIFSASTKREAVQNQADFLVERLGGPKLYTKRKGKHYRLIHRHSPYDLNPKSAARWLEHMEAAIDASEGVDAESKRLLMAYFSHMAFFLVAGKDMSN 496
MQ+L A SGV RE++ A+D+V LF++LG T +S FY+RV+DD EEWFRSIF S K +A+QNQ +F V+R+GGP LY++RKG H LI RH P+ + ++A RWL HM+ A+D + +DA+SK ++ +F H AFFLVAG +M N
Sbjct: 1 MQSLQDKASEWSGVKREDAFAIDEVN--LFQKLGLQTFVTLSTKFYNRVYDDDEEWFRSIFGNSKKEDAIQNQYEFFVQRMGGPPLYSQRKG-HPALIGRHRPFPVTHRAAERWLHHMQLALDETPDIDADSKVRMINFFRHTAFFLVAGDEMKN 152
BLAST of mRNA_E-siliculosus-1a_F_contig1083.579.1 vs. uniprot
Match: A9S385_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9S385_PHYPA) HSP 1 Score: 147 bits (370), Expect = 5.120e-40 Identity = 73/147 (49.66%), Postives = 107/147 (72.79%), Query Frame = 2 Query: 68 SGVTREESVALDKVKPTLFERLGQDTIEGISALFYDRVFDDE-EWFRSIFSASTKREAVQNQADFLVERLGGPKLYTKRKGKHYRLIHRHSPYDLNPKSAARWLEHMEAAIDASEGVDAESKRLLMAYFSHMAFFLVAGKDMSNPSN 505
SGV ++++ +D+V LF+RLG DT +S FY RV+DD+ EWFR IFS+STK +A++NQ +F V+R+GGP LY++RKG H LI RH P+ + + A RWLEHM+AA++ + +DA+SK+ + +F H A+FLVAGK++ N N
Sbjct: 11 SGVKQDDAFKIDEVN--LFQRLGLDTFIKLSTNFYARVYDDDQEWFRKIFSSSTKEDAIRNQYEFFVQRMGGPPLYSQRKG-HPALIGRHGPFTFDEQGAVRWLEHMQAALNDTPEIDADSKKRMFDFFKHTAYFLVAGKELMNRRN 154
BLAST of mRNA_E-siliculosus-1a_F_contig1083.579.1 vs. uniprot
Match: A0A2P2JC83_RHIMU (Uncharacterized protein MANES_03G064300 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2JC83_RHIMU) HSP 1 Score: 146 bits (369), Expect = 9.480e-40 Identity = 76/155 (49.03%), Postives = 106/155 (68.39%), Query Frame = 2 Query: 35 MQALTACAFAGSGVTREESVALDKVKPTLFERLGQDTIEGISALFYDRVFDDEE-WFRSIFSASTKREAVQNQADFLVERLGGPKLYTKRKGKHYRLIHRHSPYDLNPKSAARWLEHMEAAIDASEGVDAESKRLLMAYFSHMAFFLVAGKDMSN 496
MQ+L A SGV + ++ A+D LF+ LG + +S FY+RVFDDEE WFRSIF+ S K EA+QNQ +F V+R+GGP LY++RKG H LI RH P+ + ++A RWL+HM+ A+D + G+D +SK +M +F H AFFLVAG ++ N
Sbjct: 1 MQSLQEKASEWSGVKQADAFAIDNTN--LFQNLGLQSFVNLSTNFYNRVFDDEEEWFRSIFAGSKKEEAIQNQYEFFVQRMGGPPLYSQRKG-HPALIGRHRPFPVTHRAAERWLQHMQIALDTTPGIDDDSKIKMMNFFRHTAFFLVAGDELKN 152 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1083.579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1083.579.1 >prot_E-siliculosus-1a_F_contig1083.579.1 ID=prot_E-siliculosus-1a_F_contig1083.579.1|Name=mRNA_E-siliculosus-1a_F_contig1083.579.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=173bp MQALTACAFAGSGVTREESVALDKVKPTLFERLGQDTIEGISALFYDRVFback to top mRNA from alignment at E-siliculosus-1a_F_contig1083:18546..22516+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1083.579.1 ID=mRNA_E-siliculosus-1a_F_contig1083.579.1|Name=mRNA_E-siliculosus-1a_F_contig1083.579.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3971bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1083:18546..22516+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1083:18546..22516+ >mRNA_E-siliculosus-1a_F_contig1083.579.1 ID=mRNA_E-siliculosus-1a_F_contig1083.579.1|Name=mRNA_E-siliculosus-1a_F_contig1083.579.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1038bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1083:18546..22516+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |