mRNA_E-siliculosus-1a_F_contig1083.577.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1083.577.1 vs. uniprot
Match: D8LRC0_ECTSI (W2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRC0_ECTSI) HSP 1 Score: 401 bits (1031), Expect = 2.180e-137 Identity = 238/254 (93.70%), Postives = 239/254 (94.09%), Query Frame = 1 Query: 1 TRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAKKGKDKDXXXXXXXXXXXXXXXXXXXXXXNGDDSVXXXXXXXXXXXXXXXXENTSDDGETKTTVDEFGDVVATSGSLEVEDAVAFDDSVAAIRRHLDDGTSNENIFEEIRTAQTFAAFPVHYRIHLFVAASFATADKVTKDDIESRAAMFDMLKSRPDDQRHIIGAFELLCQ 762
TRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAKK K XXXXXXXXXXXXXXXXX NGDDS XXXXXXXXXXXENTSDDGETKTTV+EFGDVVATSGSLEVEDAVAFDDSVAAIRRHLDDGTSNENIFEEIRTAQTFAAFPVHYRIHLFVAASFATADKVTKDDIESRAAMFDMLKSRPDDQRHIIGAFELLCQ
Sbjct: 69 TRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAKKSKXXXXXXXXXXXXXXXXXXXXEEVSLNGDDSAKEKKDXXXXXXXXXXXENTSDDGETKTTVNEFGDVVATSGSLEVEDAVAFDDSVAAIRRHLDDGTSNENIFEEIRTAQTFAAFPVHYRIHLFVAASFATADKVTKDDIESRAAMFDMLKSRPDDQRHIIGAFELLCQ 322
BLAST of mRNA_E-siliculosus-1a_F_contig1083.577.1 vs. uniprot
Match: A0A6T5QBS0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QBS0_HETAK) HSP 1 Score: 150 bits (380), Expect = 1.460e-39 Identity = 140/261 (53.64%), Postives = 168/261 (64.37%), Query Frame = 1 Query: 1 TRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAK---KGKDKDXXXXXXXXXXXXXXXXXXXXXXNGDDSVXXXXXXXXXXXXXXXXENTSDDGETKTTVDEFGDVV---ATSGSLEVEDAVAFDDSVAAIRRHL-DDGTSNENIFEEIRTAQTFAAFPVHYRIHLFVAASFATADKVTKDDIESRAAMFDMLKS-RPDDQRHIIGAFELLC 759
T++ EE+E+A+VNGAH++ LQQ+V +Y + FVLCPNCRLPE+ YKIK+ I+HKC ACGAKEMVDM HKL TYI+ KKAK K K XXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXX A G L VED AFD V ++RR L G + EE+R AQT ++FP H+R+HL VAA+FA V ++ +RAA + P RH+IGAFELLC
Sbjct: 68 TKWVEEEEKALVNGAHSDNDLQQMVFRYCQAFVLCPNCRLPETDYKIKSETIWHKCMACGAKEMVDMQHKLTTYILGNVKKAKLAEKAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLGGLSVEDQSAFDTGVESVRRFLASPGWDTPLLMEELRVAQTLSSFPAHFRVHLLVAAAFAEGP-VGAAEVAARAADLRAAHNGNPILARHMIGAFELLC 327
BLAST of mRNA_E-siliculosus-1a_F_contig1083.577.1 vs. uniprot
Match: A0A7S3DU57_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DU57_9STRA) HSP 1 Score: 129 bits (324), Expect = 1.760e-33 Identity = 61/89 (68.54%), Postives = 74/89 (83.15%), Query Frame = 1 Query: 1 TRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAKKGKDKD 267
+RY+ E +RAIVNGAHT+A LQ L++KYVE FVLCPNC LPE++YKIK+ I+HKC ACGAKEMVDMSH+LC YI+ KKAKK K K+
Sbjct: 73 SRYSAETDRAIVNGAHTDAVLQDLINKYVEKFVLCPNCGLPETEYKIKSEVIYHKCAACGAKEMVDMSHRLCNYILAEDKKAKKDKGKN 161
BLAST of mRNA_E-siliculosus-1a_F_contig1083.577.1 vs. uniprot
Match: B8BW00_THAPS (W2 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BW00_THAPS) HSP 1 Score: 132 bits (333), Expect = 8.570e-33 Identity = 130/261 (49.81%), Postives = 164/261 (62.84%), Query Frame = 1 Query: 1 TRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAKK-----GKDKDXXXXXXXXXXXXXXXXXXXXXXNGDDSVXXXXXXXXXXXXXXXXENTSDDGETKTTVDEFGDVVATSGSLEVEDAVAFDDSVAAIRRHLDDG--TSNENIFEEIRTAQTFAAFPVHYRIHLFVAASFATADKVTKDDIESRA-AMFDMLKSRPDDQRHIIGAFELLC 759
T YN E +RA+VNGAHT+ LQQ+VHKY+ELFVLCPNCRLPE++YKIK+G I+HKC ACG K+ VDM+HKLCTYI+ KKAK+ GK XXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXX D + D V+DA A +V A+++ L D S I E++ Q + +IH+FV + F T D + +E A A+ + + + +RH+I +FE LC
Sbjct: 72 TTYNTETDRAVVNGAHTDQVLQQMVHKYIELFVLCPNCRLPETEYKIKSGMIYHKCAACGNKDAVDMTHKLCTYILAQDKKAKQDAKKSGKKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYDSYDDDDNGGTEEHVDDANAMALAVEAMKKFLADNPDASPSAIAEKVVNEQMASGLKSQDKIHIFVQSVF-TPDFYKQKQVEKHAPAIAKITQGKNVMERHLIASFEGLC 331
BLAST of mRNA_E-siliculosus-1a_F_contig1083.577.1 vs. uniprot
Match: A0A1Z5JLW0_FISSO (Translation initiation factor 5 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JLW0_FISSO) HSP 1 Score: 132 bits (332), Expect = 1.100e-32 Identity = 125/260 (48.08%), Postives = 162/260 (62.31%), Query Frame = 1 Query: 1 TRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAKKGKDKDXXXXXXXXXXXXXXXXXXXXXXNGDDSVXXXXXXXXXXXXXXXXENTSDDGETKTTVDEFGDVVATSGSLE----VEDAVAFDDSVAAIRRHLDDGTS--NENIFEEIRTAQTFAAFPVHYRIHLFVAASFATADKVTKDDIESRAAMFDML-KSRPDDQRHIIGAFELLC 759
+RY+ + +RAIVNGAHT+ATLQ+L+H+Y+E FVLCP CRLPE+KYKIK+ I+H C ACGAK+MVDMSHKLC YI+ KKAKK K K XXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXX +N D + DEF V+D AF +V A + + + + ++ + E + Q +A H +I + + A+F T+D ++E A + + S +RHII A E C
Sbjct: 73 SRYSADTDRAIVNGAHTDATLQELMHRYIEKFVLCPTCRLPETKYKIKSDTIYHSCAACGAKDMVDMSHKLCNYILAENKKAKKDKGKXXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXNGDKNYIKDALSGKKDDEFXXXXXXXXXXXXTEVVDDDSAFQLAVDATKTFIKENANATDDQLIEYVTNQQMASALKSHDKIRILILAAF-TSDFYKNKEVEKYAPVIARIANSNRIMERHIISALEAFC 326
BLAST of mRNA_E-siliculosus-1a_F_contig1083.577.1 vs. uniprot
Match: A0A7S1D9Q5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D9Q5_CYCTE) HSP 1 Score: 130 bits (327), Expect = 6.810e-32 Identity = 61/90 (67.78%), Postives = 74/90 (82.22%), Query Frame = 1 Query: 1 TRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAKK-GKDKD 267
T YN + +RA+VNGAHT+ TLQ L+H+Y+E FVLCPNC LPE++YKIKN I+HKC ACG+K+MVDMSHKLCTYI+ KKAKK K KD
Sbjct: 73 TTYNPDTDRAVVNGAHTDDTLQDLMHRYIEKFVLCPNCSLPETEYKIKNDCIYHKCAACGSKDMVDMSHKLCTYILAQDKKAKKEAKSKD 162
BLAST of mRNA_E-siliculosus-1a_F_contig1083.577.1 vs. uniprot
Match: B7G289_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G289_PHATC) HSP 1 Score: 130 bits (327), Expect = 7.250e-32 Identity = 61/88 (69.32%), Postives = 71/88 (80.68%), Query Frame = 1 Query: 1 TRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAKKGKDK 264
TRY+ E +RA+VNGAH +A LQ L+H+Y+E FVLCPNC LPE+ YKIKN AI+HKC ACGAKEMVDMSHKLC YI+ KKAKK K
Sbjct: 73 TRYSAETDRAVVNGAHMDAVLQDLMHRYIERFVLCPNCNLPETDYKIKNDAIWHKCAACGAKEMVDMSHKLCNYILAEDKKAKKDSKK 160
BLAST of mRNA_E-siliculosus-1a_F_contig1083.577.1 vs. uniprot
Match: A0A7S2KDW7_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KDW7_9STRA) HSP 1 Score: 129 bits (325), Expect = 1.000e-31 Identity = 123/256 (48.05%), Postives = 155/256 (60.55%), Query Frame = 1 Query: 1 TRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAKKGKDKDXXXXXXXXXXXXXXXXXXXXXXNGDDSVXXXXXXXXXXXXXXXXENTSDDGETKTTVDEFGDVVATSGSLE-VEDAVAFDDSVAAIRRHLDDG--TSNENIFEEIRTAQTFAAFPVHYRIHLFVAASFATADKVTKDDIESRAAMFDMLKSRPDDQRHIIGAFELLC 759
T Y++E RA+VNG HT+A LQQ VHKYVE FV+CPNC LPE+ YKIK+G I HKC ACGAKEMVDMSHKL YI+ KKAK+ XXXXXXXXXXXXX XXX XXXXXXXXXXXXXXXX DGE + V GD+ +E V+D A +V A ++ L D + I +++ Q + RIH+FV A+F T TK ++ ++ + + + +RH+I A E LC
Sbjct: 71 TTYSDETNRAVVNGHHTDAVLQQAVHKYVEAFVICPNCGLPETDYKIKSGVITHKCAACGAKEMVDMSHKLTNYILAQDKKAKQDAXXXXXXXXXXXXXXXXGDSDEEXXXX---XXXXXXXXXXXXXXXXXXXXXXXDGELEDAV---GDISLGDDDVEHVDDDNAMALAVEATKKFLSDNPDATPAAISDKVANEQMASGLKSQDRIHIFVRAAFTTDFFKTKQVAKNAPSISKITQGKTVMERHLISACECLC 320
BLAST of mRNA_E-siliculosus-1a_F_contig1083.577.1 vs. uniprot
Match: A0A7S3LEE8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LEE8_9STRA) HSP 1 Score: 129 bits (324), Expect = 1.870e-31 Identity = 60/89 (67.42%), Postives = 75/89 (84.27%), Query Frame = 1 Query: 1 TRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAKK-GKDK 264
TRY+ E +RAI+NGAHT+ATLQ+L+ +Y++ FVLCPNC LPE++YKIK+ +FHKC ACGAKEMVDMSHKLC +I+ KKAKK GK K
Sbjct: 73 TRYSAETDRAIINGAHTDATLQELIKRYIDKFVLCPNCNLPETEYKIKSDTVFHKCMACGAKEMVDMSHKLCNFILAENKKAKKDGKGK 161
BLAST of mRNA_E-siliculosus-1a_F_contig1083.577.1 vs. uniprot
Match: A0A1E7FBJ2_9STRA (eIF-5_eIF-2B-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBJ2_9STRA) HSP 1 Score: 127 bits (320), Expect = 7.920e-31 Identity = 61/89 (68.54%), Postives = 73/89 (82.02%), Query Frame = 1 Query: 1 TRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGAIFHKCYACGAKEMVDMSHKLCTYIVNTAKKAKKGKDKD 267
T YNEE +RAIVNG+HT+ TLQ+L+H+YVE FVLCP C LPE+KY IKNG I+HKC ACGAKEMVDM+HKL YI+ KK KK K+K+
Sbjct: 73 TTYNEETDRAIVNGSHTDDTLQKLMHRYVETFVLCPTCGLPETKYSIKNGTIWHKCAACGAKEMVDMNHKLTNYILAQDKKNKKLKNKN 161 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1083.577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1083.577.1 >prot_E-siliculosus-1a_F_contig1083.577.1 ID=prot_E-siliculosus-1a_F_contig1083.577.1|Name=mRNA_E-siliculosus-1a_F_contig1083.577.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=254bp TRYNEEDERAIVNGAHTNATLQQLVHKYVELFVLCPNCRLPESKYKIKNGback to top mRNA from alignment at E-siliculosus-1a_F_contig1083:210..3353- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1083.577.1 ID=mRNA_E-siliculosus-1a_F_contig1083.577.1|Name=mRNA_E-siliculosus-1a_F_contig1083.577.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3144bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1083:210..3353- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1083:210..3353- >mRNA_E-siliculosus-1a_F_contig1083.577.1 ID=mRNA_E-siliculosus-1a_F_contig1083.577.1|Name=mRNA_E-siliculosus-1a_F_contig1083.577.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1524bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1083:210..3353- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |