mRNA_E-siliculosus-1a_F_contig1082.573.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1082.573.1 vs. uniprot
Match: D8LRX5_ECTSI (LigB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRX5_ECTSI) HSP 1 Score: 568 bits (1463), Expect = 4.700e-197 Identity = 268/273 (98.17%), Postives = 270/273 (98.90%), Query Frame = 2 Query: 278 MKQIDATSAAAQWYRTFTKKWAKPSAIVVVSAHWEGRGAVKVTTGEKHPLFFDYYGFPDYCYDLEYAPPGHPELAGRIIELLEADGFNARGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLKMGKTLKKLVDERDVLVVGSGQATHGRGSDHRPYPPGKGAPKEEAFVAWLKETAASPAVTPEERQRRLREWEMDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACVGFWPGGGEGEAKGGDDEGVCST 1096
MKQIDATSAAAQWYRTFTKKWAKPSAIVVVSAHWEGRGAVKVTTGEKHPLFFDYYGFPDYCYDLEYAPPGHPELA RIIELLEADGFNARGDDSRGYDHGTFIPLKLMYPDAD+PVVQVSLLGGLDPEKHLKMGKTLKKLVDERDVL+VGSGQATHGRGSDHRPYPPGKGAPKEEAFV WLKETAASPAVTPEERQRRLREWE DAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACVGFWPGGGEGEAKGGDDEGVCST
Sbjct: 1 MKQIDATSAAAQWYRTFTKKWAKPSAIVVVSAHWEGRGAVKVTTGEKHPLFFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNARGDDSRGYDHGTFIPLKLMYPDADVPVVQVSLLGGLDPEKHLKMGKTLKKLVDERDVLIVGSGQATHGRGSDHRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACVGFWPGGGEGEAKGGDDEGVCST 273
BLAST of mRNA_E-siliculosus-1a_F_contig1082.573.1 vs. uniprot
Match: A0A836CEX8_9STRA (Catalytic LigB subunit of aromatic ring-opening dioxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEX8_9STRA) HSP 1 Score: 243 bits (619), Expect = 1.030e-70 Identity = 134/287 (46.69%), Postives = 166/287 (57.84%), Query Frame = 2 Query: 188 SKMTMSPRPTSLFLSHGGGPGFLMTGRTGGMKQIDATSAAAQWYRTFTKKWAKPSAIVVVSAHWEGRGAVKVTTGEKHP-LFFDYYGFPDYCYDLEYAPPGHPELAGRIIELLEADGFNARGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLKMGKTLKKLVDERDVLVVGSGQATHGRGSDHRPYPPGKGAPKEE---AFVAWLKETAASPAVTPEERQRRLREWEMDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACVGF 1036
+K T P S+F+SHGGGP F G ID S A +R + KP IV+ +AHWE G TG+ P L +DYYGFP Y L Y PG P+LA I+ LL+ G +A + RG+DHG FIPLK++YPDAD+PVV +SL LDP H+ +GK L L R VLV GSG ATH G G+G P E AF+ WLK T V+ +ER+RRL W +APH R++HPREEHLLPLHVAAG GF G ++ D G MS+A F
Sbjct: 4 AKSTCRALPRSVFISHGGGPCFFYEA-AGPFSAIDKNSRVAADFRKLSTVLPKPKVIVICTAHWEADGPKIRVTGQPAPSLVYDYYGFPAETYKLTYPAPGDPQLAADIVALLKGAGISAELELERGFDHGVFIPLKMIYPDADVPVVAISLSSTLDPAFHISVGKALSGLAG-RGVLVFGSGMATHNLGMVRSAAAHGEGVPVEPRAGAFIDWLKATLGD-GVSAQERERRLLRWTEEAPHARHSHPREEHLLPLHVAAGAAGFAAGELVLDATVFGGMSMASFAF 287
BLAST of mRNA_E-siliculosus-1a_F_contig1082.573.1 vs. uniprot
Match: A0A250INI5_9DELT (Dioxygenase n=1 Tax=Melittangium boletus DSM 14713 TaxID=1294270 RepID=A0A250INI5_9DELT) HSP 1 Score: 221 bits (562), Expect = 2.750e-62 Identity = 130/289 (44.98%), Postives = 166/289 (57.44%), Query Frame = 2 Query: 170 NNRSNNSKMTMSPRPTSLFLSHGGGPGFLMTGRTGGMKQIDATSAAAQWYRTFTKKWAKPSAIVVVSAHWEGRGAVKVTTGEKHPLFFDYYGFPDYCYDLEYAPPGHPELAGRIIELLEADGFNARGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLKMGKTLKKLVDERDVLVVGSGQATHGRGSDHRPYPPGKGAPKEEAFVAWLKETAASPAVTPEERQRRLREWEMDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACVGF 1036
N + ++ + S R +F+ HGGGP + K+ A S Q RT K P A++V+SAHWE V T E+ P+ +DYYGFP Y + + PGHP+LA R+ ELL A GF D RGYDHGTFIPLKL YPDAD+P VQ+SL GLDPE+HL MG+ L L DE V ++GSG + H + P + EAF WL+ETA A +ER RL +W+ AP GR +HPREEHLLPL V AG G GSI ++ +G L+ V F
Sbjct: 30 NGQRSSESESKSERMPVVFMPHGGGPWPFVDIGFNDPKEFSALSGYLQSVRTLPKT--APKALLVISAHWE-EAVPTVMTSERPPILYDYYGFPPASYQITWPAPGHPQLAARVRELLGAAGFETASDSRRGYDHGTFIPLKLTYPDADVPTVQLSLKQGLDPEEHLAMGRALAPLRDE-GVFIIGSGMSYHNLRAGFGP----RTHRAAEAFDVWLRETAVLEA---KERDARLVQWDK-APAGRQSHPREEHLLPLMVIAGAAGADRGSIAYNGTFLG-TPLSAVHF 305
BLAST of mRNA_E-siliculosus-1a_F_contig1082.573.1 vs. uniprot
Match: A0A354Z8M8_9SPIO (Dioxygenase n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A354Z8M8_9SPIO) HSP 1 Score: 219 bits (559), Expect = 2.890e-62 Identity = 128/272 (47.06%), Postives = 166/272 (61.03%), Query Frame = 2 Query: 221 LFLSHGGGPGFLMTGRTGGMKQIDATSAAAQWYRTFTKKWAKPSAIVVVSAHWEGRGAVKVTTGEKHPLFFDYYGFPDYCYDLEYAPPGHPELAGRIIELLEADGFNARGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLKMGKTLKKLVDERDVLVVGSGQATHGRG--SDHRPYPPGKGAP--KEEAFVAWLKETAASPAVTPEERQRRLREWEMDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLA 1024
++LSHGGGP + G G A Q+ K KP AI+V+SAHWE A +T GE L +DYYGFP+ Y++ Y PG+P + + LL G ++R D +RG+DHG FIPLKLMYPDADIP VQ+SLL LDP HL +GK L+ L+ E+++LV+GSG + H G S H GK AP + EAF WL + A++ ER+RRL WE +APH R HPREEHLLPLHV AG +P +IFDD +G ++A
Sbjct: 19 VYLSHGGGP-LPILGDAG-------HRAMVQFMEALPAKLRKPEAILVISAHWEAPEAT-LTGGETPSLLYDYYGFPEKAYEITYPAPGNPRMVELVAGLLRKSGISSRIDTNRGFDHGMFIPLKLMYPDADIPTVQMSLLRNLDPVSHLNLGKALRPLM-EQNILVIGSGFSFHNIGAFSWH-----GKAAPDPRNEAFQNWLIDCCTG-ALSESERERRLSAWE-EAPHARYCHPREEHLLPLHVCAGMAN-KPARVIFDDDILGKRAVA 272
BLAST of mRNA_E-siliculosus-1a_F_contig1082.573.1 vs. uniprot
Match: D0LTU9_HALO1 (Extradiol ring-cleavage dioxygenase class III protein subunit B n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) TaxID=502025 RepID=D0LTU9_HALO1) HSP 1 Score: 218 bits (555), Expect = 8.980e-62 Identity = 128/277 (46.21%), Postives = 163/277 (58.84%), Query Frame = 2 Query: 194 MTMSPRPTSLFLSHGGGPGFLMTGRTGGMKQIDATSAAAQWYRTFTKKWA-KPSAIVVVSAHWEGRGAVKVTTGEKHPLFFDYYGFPDYCYDLEYAPPGHPELAGRIIELLEADGFNARGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLKMGKTLKKLVDERDVLVVGSGQATHGRGSDHRPYPPGKGAPKEEAFVAWLKETAASPAVTPEERQRRLREWEMDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDD-FAMGHMS 1018
M S + +F+ HGGGP + ++D A + R K+ A KP A++V+SAHWE V T E+ PL+FDYYGFP Y L + PG P LA R+ ELL A GF+ D RG+DHGTFIPLK+ YPDAD+P +Q+SL+ LDP +HL MG+ L L +E VL+VGSG + H D R + G EAF WL+E A +PA ER +L+ W DAP R AHPREEHLLPL V AG G PG++ FD FA +S
Sbjct: 1 MPKSEKMPVMFIPHGGGPWPFVELSMVTRAEVDTL---AGYLRDLPKQLAHKPKALLVISAHWE-TDVPTVMTAEQPPLYFDYYGFPPESYTLTWPAPGSPSLAARVRELLGAAGFDTASDSERGFDHGTFIPLKVAYPDADVPTIQLSLMRHLDPAQHLAMGRALAPLREE-GVLIVGSGMSFH----DLRSFFGRSGRKPSEAFDTWLREAATAPAA---ERAAKLQAW-ADAPRARRAHPREEHLLPLMVVAGAAGDDPGTVGFDGLFADARLS 264
BLAST of mRNA_E-siliculosus-1a_F_contig1082.573.1 vs. uniprot
Match: A0A1H3CEX5_9GAMM (Aromatic ring-opening dioxygenase, catalytic subunit, LigB family n=1 Tax=Marinobacter mobilis TaxID=488533 RepID=A0A1H3CEX5_9GAMM) HSP 1 Score: 217 bits (553), Expect = 1.580e-61 Identity = 126/283 (44.52%), Postives = 164/283 (57.95%), Query Frame = 2 Query: 194 MTMSPRPTSLFLSHGGGPGFLMTGRTGGMKQIDATSAAAQWYRTFTKKWAKPSAIVVVSAHWEGRGAVKVTTGEKHPLFFDYYGFPDYCYDLEYAPPGHPELAGRIIELLEADGFNARGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLKMGKTLKKLVDERDVLVVGSGQATHG----RGSDHRPYPPGKGAPKEEAFVAWLKETAASPAVTPEERQRRLREWEMDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACV 1030
M P P L+L HGGGP L+ A + +T ++ P AIVV+SAHWE V VT+G + L +DYYGFP Y +EY PG P LA I++ L A G +A+GD RG+DHG FIPLKLMYPDA IP +Q++L +DP +HL +G+ L L ER++LVVGSG + H R D R Y +AF WL +T P +T + R +RLR+W AP R HPREEHLLPLH+ AG G QP ++FD MGH ++A +
Sbjct: 1 MATPPAPI-LYLPHGGGPLPLLAD--------PGHRAMTDFLQTIPQRLGTPEAIVVISAHWEAP-VVTVTSGAQPALIYDYYGFPPESYSIEYPAPGAPALAETILKHLAAAGIDAQGDRDRGFDHGLFIPLKLMYPDASIPCLQIALQQEMDPGQHLAIGQALAAL-RERNILVVGSGLSFHNMQLLRSGDDR-Y-----RDDVDAFHHWLIDTCCHPELTADTRNQRLRDW-AQAPGARLCHPREEHLLPLHLCAGMAGNQPAEVVFDAPVMGHRAIALL 265
BLAST of mRNA_E-siliculosus-1a_F_contig1082.573.1 vs. uniprot
Match: A0A7X8D0G4_9SPIR (Dioxygenase n=1 Tax=Treponema sp. TaxID=166 RepID=A0A7X8D0G4_9SPIR) HSP 1 Score: 216 bits (549), Expect = 6.490e-61 Identity = 122/276 (44.20%), Postives = 163/276 (59.06%), Query Frame = 2 Query: 209 RPTSLFLSHGGGPGFLMTGRTGGMKQIDATSAAAQWYRTFTKKWAKPSAIVVVSAHWEGRGAVKVTTGEKHPLFFDYYGFPDYCYDLEYAPPGHPELAGRIIELLEADGFNARGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLKMGKTLKKLVDERDVLVVGSGQATHGRGSDHRPYPPGKGAP--KEEAFVAWLKETAASPAVTPEERQRRLREWEMDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACV 1030
R +L++ HGGGP + G G + ++A S Q + +P AI+VVSAHWE V+V G L +DYYGFP+ Y + Y PG P+LA +I+ L G AR D RG+DHG F+PL LMYP+AD+P VQ+SL+ GLDP HL++G+ L L E D+L++GSG + H + + G G P + EAF AWL E+ ASPA+ P ER RL WE PH R HPREEHLLPLHV AG G + S ++ +G + A +
Sbjct: 5 RARALYIPHGGGP-LPLLGDPGHAELVEALSGLGQ-------ELGRPDAILVVSAHWE-EPEVRVIAGASPGLLYDYYGFPEEAYRIRYPAPGAPDLADQILAALGRAGIPARLDGERGFDHGVFVPLALMYPEADVPCVQISLIRGLDPRAHLELGRALSALEGE-DLLILGSGFSFH---NVREFFAGGAGGPDSRNEAFQAWLAESCASPAIEPPERLGRLEGWER-VPHARYCHPREEHLLPLHVCAGFAGGRRASRVWSWSVLGKRASAFL 266
BLAST of mRNA_E-siliculosus-1a_F_contig1082.573.1 vs. uniprot
Match: A0A081BNH6_9BACT (Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B n=1 Tax=Candidatus Moduliflexus flocculans TaxID=1499966 RepID=A0A081BNH6_9BACT) HSP 1 Score: 215 bits (548), Expect = 9.310e-61 Identity = 124/275 (45.09%), Postives = 167/275 (60.73%), Query Frame = 2 Query: 221 LFLSHGGGPGFLMTGRTGGMKQIDAT-SAAAQWYRTFTKKWAKPSAIVVVSAHWEGRGAVKVTTGEKHPLFFDYYGFPDYCYDLEYAPPGHPELAGRIIELLEADGFNARGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLKMGKTLKKLVDERDVLVVGSGQATHGRGSDHRPYPPGKGA----PKEEAFVAWLKETAASPAVTPEERQRRLREWEMDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACV 1030
L+ SHGGGP ++ DA+ A + R + +P AI+VVSAHWE A + +G+ PLF+DYYGFP Y + Y PG+PELA RI+ LL A R D RG+DHG FIPLKLMYP ADIP +Q+SLL GL+P H+ +GK L++++ E ++LV+GSG + H + +GA P +AF WL ET A +++ EER++RL EW AP R HPREEHLLPLHV G T P ++IFDD+ +G +A +
Sbjct: 14 LYFSHGGGPLPILG---------DASHKAMVDFMRQLPSRLRQPEAILVVSAHWE-ESAATLLSGQTPPLFYDYYGFPQEAYAITYPAPGNPELAERIVRLLNAQNIPVRLDPERGFDHGVFIPLKLMYPQADIPALQLSLLRGLNPTAHIALGKALREMLSE-NILVIGSGFSFHNMQAFSW-----QGANMPDPANDAFQNWLIETCAG-SLSQEEREQRLIEWPT-APSARYCHPREEHLLPLHVCFGMTD-TPATVIFDDYILGKRGVAFL 269
BLAST of mRNA_E-siliculosus-1a_F_contig1082.573.1 vs. uniprot
Match: A0A496XGL0_9GAMM (Dioxygenase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A496XGL0_9GAMM) HSP 1 Score: 214 bits (546), Expect = 1.400e-60 Identity = 124/270 (45.93%), Postives = 156/270 (57.78%), Query Frame = 2 Query: 221 LFLSHGGGPGFLMTGRTGGMKQIDATSAAAQWYRTFTKKWAKPSAIVVVSAHWEGRGAVKVTTGEKHPLFFDYYGFPDYCYDLEYAPPGHPELAGRIIELLEADGFNARGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLKMGKTLKKLVDERDVLVVGSGQATHGRGSDHRPYPPGKGAPKEEAFVAWLKETAASPAVTPEERQRRLREWEMDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACV 1030
LF+ HGGGP + G G +D A T +PSAI+V+SAHWE G +T+G+ L +DYYGFPD YD+EY G P LA RI LLE G AR DD RG+DHG F+PLKLMYP A IP VQ+SL+ LDP+ H+ +GK L L E +VL+VGSG + H + G K AF WL T + + P ER+RRL EW DAP R HPREEHLLPLHV G + + +FDD +G ++ A +
Sbjct: 5 LFIPHGGGP-LPLLGDAGHQVMVDFLGA-------ITANLGQPSAILVISAHWE-EGVATITSGKSPSLIYDYYGFPDEAYDVEYPAAGDPILAERIFGLLEKAGIEARMDDHRGFDHGLFVPLKLMYPAASIPCVQLSLINNLDPQTHINIGKALSDLRKE-NVLIVGSGLSFHNMDA-FLSKSDGVMDAKNRAFEDWLAHTCTNNNIPPPERERRLIEW-ADAPAARYCHPREEHLLPLHVCYGLSN-SVAARVFDDKVLGMLASAYL 261
BLAST of mRNA_E-siliculosus-1a_F_contig1082.573.1 vs. uniprot
Match: A0A3M1ERB5_9CHLR (Dioxygenase n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1ERB5_9CHLR) HSP 1 Score: 214 bits (544), Expect = 2.630e-60 Identity = 122/273 (44.69%), Postives = 163/273 (59.71%), Query Frame = 2 Query: 221 LFLSHGGGPGFLMTGRTGGMKQIDATSAAAQWYRTFTKKWAKPSAIVVVSAHWEGRGAVKVTTGEKHPLFFDYYGFPDYCYDLEYAPPGHPELAGRIIELLEADGFNARGDDSRGYDHGTFIPLKLMYPDADIPVVQVSLLGGLDPEKHLKMGKTLKKLVDERDVLVVGSGQATHGRGSDHRPYPPGKGA---PKEEAFVAWLKETAASPAVTPEERQRRLREWEMDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACV 1030
+++ HGGGP + G G A ++ + KP AI+VVSAHWE R A V + P+ +DYYGFP Y++ Y PGHP LA R+ LL + AR D RG+DHGT+IPLKLMYPDA+IP +QVSL+ GL+PE HL MGKTL+ L DE ++L++GSG + H + R + GKG P+ +AF WL ET +++ ER++RL WE AP R HPREEHLLPLHV G P ++FDD +G + +
Sbjct: 4 VYVPHGGGP-LPLLGEPG-------HRAMVEFMTRLPARLTKPEAIIVVSAHWEERSAT-VLGADHPPMLYDYYGFPPEAYEITYPAPGHPALAKRLAGLLAENDIPARVDAERGFDHGTYIPLKLMYPDAEIPTIQVSLVAGLNPEIHLAMGKTLRALRDE-NILLLGSGFSFH----NQRAFFGGKGDGSDPQNDAFQDWLIETCTG-SLSQREREKRLAAWEQ-APGARYCHPREEHLLPLHVCFGAA-HGPAEVVFDDKIVGKRGIGLL 259 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1082.573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1082.573.1 >prot_E-siliculosus-1a_F_contig1082.573.1 ID=prot_E-siliculosus-1a_F_contig1082.573.1|Name=mRNA_E-siliculosus-1a_F_contig1082.573.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=302bp MTMSPRPTSLFLSHGGGPGFLMTGRTGGMKQIDATSAAAQWYRTFTKKWAback to top mRNA from alignment at E-siliculosus-1a_F_contig1082:18343..24640+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1082.573.1 ID=mRNA_E-siliculosus-1a_F_contig1082.573.1|Name=mRNA_E-siliculosus-1a_F_contig1082.573.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6298bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1082:18343..24640+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1082:18343..24640+ >mRNA_E-siliculosus-1a_F_contig1082.573.1 ID=mRNA_E-siliculosus-1a_F_contig1082.573.1|Name=mRNA_E-siliculosus-1a_F_contig1082.573.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1812bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1082:18343..24640+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |