mRNA_E-siliculosus-1a_F_contig1082.572.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1082.572.1 vs. uniprot
Match: D8LRX6_ECTSI (Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRX6_ECTSI) HSP 1 Score: 590 bits (1520), Expect = 8.360e-202 Identity = 500/551 (90.74%), Postives = 503/551 (91.29%), Query Frame = 1 Query: 121 MAAAGLQFVDLHSAAKQDDIMGVVKLLEEGAPIDKRDPYGYTPLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHAATDLRGRTSAAVCDMGLYDVDQSVKDRIIQLLKNPPVQQLEAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGANPGLQGAAPAGSSEGGSAVXXXXXXXXXXXXXXXXXXXLAAENGVFALWDTSLGPGAGDAGPGASSMIDKDWTDPEDAAWNEMWAMLHVPDPDNPDNNLYSEVKTLRHDVKRLRSDLNETASNDAASTXXXXXXXXXXXXXXXXXXXXXXTTNLEGLLGVSSAPAAASSSPGGGATSPATAVTDAPVVAPKSVTGSSEDSTTGLFGEMSVSARDASADGTAVPEGASPNSVGGGGRRTDGGMVSVPPAKRHRSTAAAEVGGSVGDSAGAEGAGSMGETELREQLTRQNRLLAEMAKELEGLRRERSGGATGNRGGSVGGMGEGSAVLPVLDDRGLAHKVR 1773 MAAAGLQFVDLHSAAKQDDIM VVKLLEEGAPIDKRDPYGYTPL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD AATDLRGRTSAAVCDMGLYDVDQSVKDRIIQLLKNPPV+QLEAP XXXXXXXXXXXXXXXXXXX GANPGLQGA XXXXXXXXXXXXXXXXXX LA ENGVFALWDTSLGPGAGDAGPG MIDKDWTDPEDAAWNEMWAMLHVPDPDNPDNNLYSEVKTLRHDVKRLRSDLNETASNDAAS XXXXXXXXXXXXXXXXXXXXXXT NLEGL G+SSAPA ASSSP GGATSPATAVTDAPVVAPKSVTGSSEDSTTGLFG+MSVSARDASADGTA EGASPNSVGGGGRRTDGGMVSVPPAKR RSTAAAEVGG VGDSAGAEGAGSMGETELREQLTRQNRLLAEMAKELEGLRRE SGGA GNR GS G MGEGSAVLPVLDDRGLAHKVR Sbjct: 1 MAAAGLQFVDLHSAAKQDDIMAVVKLLEEGAPIDKRDPYGYTPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQAATDLRGRTSAAVCDMGLYDVDQSVKDRIIQLLKNPPVRQLEAPPTASPASAMLALPXXXXXXXXXXXXXXXXXXX-GANPGLQGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAVENGVFALWDTSLGPGAGDAGPGG--MIDKDWTDPEDAAWNEMWAMLHVPDPDNPDNNLYSEVKTLRHDVKRLRSDLNETASNDAASXXXXXXXXXXXXXXXXXXXXXXXTANLEGLFGISSAPAEASSSPSGGATSPATAVTDAPVVAPKSVTGSSEDSTTGLFGDMSVSARDASADGTAAQEGASPNSVGGGGRRTDGGMVSVPPAKRPRSTAAAEVGGIVGDSAGAEGAGSMGETELREQLTRQNRLLAEMAKELEGLRREMSGGAAGNRSGSGGDMGEGSAVLPVLDDRGLAHKVR 548 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1082.572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1082.572.1 >prot_E-siliculosus-1a_F_contig1082.572.1 ID=prot_E-siliculosus-1a_F_contig1082.572.1|Name=mRNA_E-siliculosus-1a_F_contig1082.572.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=552bp MAAAGLQFVDLHSAAKQDDIMGVVKLLEEGAPIDKRDPYGYTPLHWACQKback to top mRNA from alignment at E-siliculosus-1a_F_contig1082:11457..18180- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1082.572.1 ID=mRNA_E-siliculosus-1a_F_contig1082.572.1|Name=mRNA_E-siliculosus-1a_F_contig1082.572.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6724bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1082:11457..18180- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1082:11457..18180- >mRNA_E-siliculosus-1a_F_contig1082.572.1 ID=mRNA_E-siliculosus-1a_F_contig1082.572.1|Name=mRNA_E-siliculosus-1a_F_contig1082.572.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3312bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1082:11457..18180- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |