mRNA_E-siliculosus-1a_F_contig1081.570.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1081.570.1 vs. uniprot
Match: D8LLY4_ECTSI (MSP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLY4_ECTSI) HSP 1 Score: 582 bits (1500), Expect = 1.510e-203 Identity = 301/307 (98.05%), Postives = 304/307 (99.02%), Query Frame = 2 Query: 38 MAAQDALFALECLPSKVLDFALEDGAEPAECVLHLTNNGSESVAFKVKTTKPKRYLVRPNQGVVAPSEDLAVSIVLLAHDKVGLISEFMQTGGCNETNKFMVQALPLQGESATAGAVPPGLWEEAKARVQQKKLVVHFTFPRPSIPPSSAETLKQASNGVRDAIAGDSSRSRFATGTEDGLQGSAGGDGNDMSQDQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLAREQQARKLLETKMMEPGARRPAGSVVGSTSPSESRSGFSLFFVLIVAALALFAGQWTAANGYPLLLGSKS 958
MAAQDALFALECLPSKVLDFALEDGAEPAECVLHLTNNGSESVAFKVKTTKPKRYLVRPNQGVVAPSEDL VSIVLLAHDKVGLISEFMQTGGCNETNKFMVQALPLQGESATAGAVPPGLW+EAKARVQQKKLVVHFTFPRPSIPPSSAETLKQASNGVRDAIAGDSSRSRFATGTEDGLQG AGGDG+DMSQDQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLAREQQARKLLETKMMEPGARRPAGSV GSTSPSESRSGFSLFFVLIVAALALFAGQWTAANGYPLLLGS+S
Sbjct: 1 MAAQDALFALECLPSKVLDFALEDGAEPAECVLHLTNNGSESVAFKVKTTKPKRYLVRPNQGVVAPSEDLPVSIVLLAHDKVGLISEFMQTGGCNETNKFMVQALPLQGESATAGAVPPGLWKEAKARVQQKKLVVHFTFPRPSIPPSSAETLKQASNGVRDAIAGDSSRSRFATGTEDGLQGGAGGDGSDMSQDQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLAREQQARKLLETKMMEPGARRPAGSVAGSTSPSESRSGFSLFFVLIVAALALFAGQWTAANGYPLLLGSES 307
BLAST of mRNA_E-siliculosus-1a_F_contig1081.570.1 vs. uniprot
Match: A0A6U6EE94_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6EE94_9STRA) HSP 1 Score: 128 bits (321), Expect = 9.900e-29 Identity = 108/328 (32.93%), Postives = 158/328 (48.17%), Query Frame = 2 Query: 62 ALECLPSKVLDFALEDGAE-----------PAECVLHLTNNG--SESVAFKVKTTKPKRYLVRPNQGVVAPSEDLAVSIVLLAHDKVGLISEFMQTGGC---NETNKFMVQALPLQGESAT--------------AGAVPPGLWEE---------------AKARVQQKKLVVHFTFPRPSIPPSSAETLKQASNGVRDAIAGDSSRSRFATGTEDGLQGSAGGDGNDMSQDQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLAREQQARKLLETKMMEPGARRPAGSVVGSTSPSESRSGFSLFFVLIVAALALFAG 910
ALE P L F L AE + C + L + G SE +AFKVKTT+P+RYLVRPNQGVVAP+ VSI+L+ DK L+ + + G + +KF+VQ+ + + A+ +GA G+ +E + KKL V P+ S+ V GD S + + + LQ + + +M+ +QM+ + + LRRKYD+LVSF++NLTAE+D++ +L TK DL RE AR LE GA AG+ S+ +G S+ +L+VA + LFAG
Sbjct: 9 ALEVTPESALQFTLTRTAENSASASSSNEPTSRCTMTLRHTGGTSEHLAFKVKTTQPRRYLVRPNQGVVAPNSTETVSILLVERDKQILLHSYDRLGQSALDHSKDKFLVQSCAVTDDFASRYMDERSKAKKIDDSGAKASGMSKEMADSLTSMWNAVASGGSVPIFNKKLHVRHVVPK--------------SDNVTQRAVGDLSATAVSK-SPPALQETQKTNVENMTPEQMFTEISSLRRKYDELVSFSVNLTAERDILNNTLEQTKRDLNREMAARAALENS----GAGGGAGT---KHEKSKGATGLSILQILVVALVFLFAG 314
BLAST of mRNA_E-siliculosus-1a_F_contig1081.570.1 vs. uniprot
Match: A0A7S2RAX6_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RAX6_9STRA) HSP 1 Score: 123 bits (309), Expect = 3.480e-27 Identity = 101/313 (32.27%), Postives = 150/313 (47.92%), Query Frame = 2 Query: 50 DALFALECLPSKVLDFALEDGA----------EPAECVLHLTNNGS--ESVAFKVKTTKPKRYLVRPNQGVVAPSEDLAVSIVLLAHDKVGLISEFMQTGGC---NETNKFMVQALPLQGESATAG-AVPPGLWEEAKARVQQKKLVVHFTFPRPSIPPSSAETLKQASNGVRDAIAGDSSRSRFATGTEDGLQGSAGGDGNDMSQDQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLAREQQARKLLETKMMEPGARRPAGSVVGSTS---PSESRSGFSLFFVLIVAALALFAGQWTAANG 931
D +ALE P L F L G C + L + G E +AFKVKTT+P+RYLVRPNQGVVAP V+I+L+ DK L+ + + G + +KF+VQ+ + A+ + ++++ K+L T S + + V ++ S S L+ + +MS DQ++A+ + LRRKYD+LVSF++NLTAE+D++ +L TK DL RE A+ LE K ++G+ S P +S GFSLF V+ VA G A +G
Sbjct: 3 DTPYALEISPDSTLQFTLTRGTANDGRSTVGESTPRCTMSLRHPGKTKEHLAFKVKTTQPRRYLVRPNQGVVAPGTTEKVTILLVEKDKQILLQSYDRLGQTALDHSKDKFLVQSCTTPDDFASRYMSAKADSTDDSEGNRATKELAESLTTMWNSAAGGDLPIYNKKLH-VHHVVSPSDSASAKGGNAPQPLEEKPSME--NMSPDQIYAEVSSLRRKYDELVSFSVNLTAERDILNNTLEQTKRDLNRETMAKAALENK-----------GLIGARSKGVPKQSSRGFSLFSVIFVALTFTLLGIKGATSG 301
BLAST of mRNA_E-siliculosus-1a_F_contig1081.570.1 vs. uniprot
Match: A0A7S0UGK8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UGK8_9STRA) HSP 1 Score: 119 bits (299), Expect = 4.440e-26 Identity = 89/246 (36.18%), Postives = 131/246 (53.25%), Query Frame = 2 Query: 77 PSKVLDFALEDGAEPAECVLHLTNNG--SESVAFKVKTTKPKRYLVRPNQGVVAPSEDLAVSIVLLAHDKVGLISEFM---QTGGCNETNKFMVQALPLQGESATAGAVPPGLWEEAKARVQQKKLVVHFTFPRPSIPPSSAET-LKQASNGVRDAIAGDSS----RSRFATGTEDGLQGSAGGDGNDMSQDQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLAREQQARKLLETK 784
P L F+L C++ L + G +ES+AFKVKTT+P+RYLVRPNQG++AP +SI+L+ DK L+ + Q+G + +KF+VQ+ A AK Q +L T S+ + T L+ VR + DSS S A+ + L+ ++ + DMS DQ+ ++ + LRRKYD+LVSF++NLTAE+D++ +L TK D RE AR LE K
Sbjct: 10 PESELVFSLSPNEATPRCMMTLKHGGGSTESIAFKVKTTQPRRYLVRPNQGLIAPGTSETISILLVEKDKQVLLQNYDRLGQSGLDHSKDKFLVQSCAADSSLA------------AKKSGSQTELYDALTAMWNSVTSGGSSTPLQNKKLHVRHVV--DSSPAPATSDAASTPKPKLEAASHSNLGDMSADQISSELSNLRRKYDELVSFSVNLTAERDILSNTLEQTKRDYNREIAARSALENK 241
BLAST of mRNA_E-siliculosus-1a_F_contig1081.570.1 vs. uniprot
Match: A0A7R9WSF8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WSF8_9STRA) HSP 1 Score: 117 bits (293), Expect = 2.610e-25 Identity = 90/264 (34.09%), Postives = 137/264 (51.89%), Query Frame = 2 Query: 53 ALFALECLPSKVLDFALEDGAEPAECVLHLTNNG--SESVAFKVKTTKPKRYLVRPNQGVVAPSEDLAVSIVLLAHDKVGLISEFM---QTGGCNETNKFMVQAL--------PLQGESATAGAVPPGLW-----EEAKARVQQKKLVVHFTFP--RPSIPPSSAETLKQASNGVRDAIAGDSSRSRFATGTEDGLQGSAGGDGNDMSQDQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLAREQQARKLLETK 784
+L +LE P LDF L + L L + G + +A+K+KTT+P+RYLVRPNQG++AP VSI+L+ DK L+ + QTG + +KF+VQ+ L +S +W ++++A V +K+ V P+ P + ++T+ A + R+A SS++ T MS DQ+ ++ LRRKYDDLVSF++NLTAE+D++ +L TK D REQ R LE+K
Sbjct: 3 SLNSLEITPDTYLDFNLAPNELTSRTTLTLRHPGHTDDHIAYKIKTTQPRRYLVRPNQGMIAPGGSDTVSILLIEKDKQILLQSYEKLGQTGLDHSKDKFLVQSCVVSSAFSSKLTKDSTELYEALTSMWNSVSNKDSQASVSHRKMHVRHQVVDNSPTSPANGSKTV--AKSFKREA----SSQANVDT----------------MSTDQLKSELTNLRRKYDDLVSFSMNLTAERDILSNTLEQTKRDYNREQATRSALESK 244
BLAST of mRNA_E-siliculosus-1a_F_contig1081.570.1 vs. uniprot
Match: A0A7S3LDL8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LDL8_9STRA) HSP 1 Score: 115 bits (287), Expect = 1.310e-24 Identity = 93/299 (31.10%), Postives = 142/299 (47.49%), Query Frame = 2 Query: 65 LECLPSKVLDFALEDGAEPAECVLHLTNNGSE--SVAFKVKTTKPKRYLVRPNQGVVAPSEDLAVSIVLLAHDKVGLISEFMQTGGC---NETNKFMVQALPLQGESATAGAVPPGL---WEEAKARVQQKKLVVHFTFPRPSIPPSSAETLKQASNGVRDAIAGDSSRSRFATGTEDGLQGSAGGDGNDMSQDQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLAREQQARKLLETKMMEPGARRPAGSVVGSTSPSES--RSGFSLFFVLIVAALALFAGQWTAANG 931
+E P + F L G + V+ L + G SVAFKVKTT+P+RYLVRPNQG++ + V I+L+ DK L F++ G N +KF+VQ+ L+ + + GL W + + PS+PP S + L G I+ + S R T + AG + + ++++KYD+LV+F++NLTAE+D++ +L TK DL R M + A+ +G G S + SGFS F VL+VA + AG ++ A G
Sbjct: 6 VEISPESEIKFELSSGEATPKAVITLKHPGGSAGSVAFKVKTTQPRRYLVRPNQGIITAGKTEEVQILLVEKDKNSLYQSFLRLGQAALDNCKDKFLVQSTFLRPSDSLSAGDYDGLTEFWTKLASNPND-----------PSLPPISNKKLTVIHTG----ISSEGSTERGGT-----VPAGAGAE----------TELEQMKKKYDELVAFSVNLTAERDVLNNTLEQTKRDLNRY----------MAKAAAKDNSGGAAGERSVGSTGGSSGFSFFTVLMVALIFWLAGCYSQAQG 264
BLAST of mRNA_E-siliculosus-1a_F_contig1081.570.1 vs. uniprot
Match: K0R3I0_THAOC (MSP domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R3I0_THAOC) HSP 1 Score: 115 bits (288), Expect = 2.070e-24 Identity = 96/329 (29.18%), Postives = 158/329 (48.02%), Query Frame = 2 Query: 50 DALFALECLPSKVLDFAL----EDGAEPAECVLHLTN-----NGSESVAFKVKTTKPKRYLVRPNQGVVAPSEDLAVSIVLLAHDKVGLISEFMQTGGC---NETNKFMVQ--------ALPLQGESATAGA--------VPPGLWEEAKARVQQKKLVVHFTFPRPSIPPSSAETLKQASNGVRDAIAGDSSRSRFATGTEDGLQGSAGGDGNDMSQDQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLAREQQARKLLETKMMEPGARRPAGSVVGSTSPSESRSGFSLFFVLIVAALA-LFAGQWTAANGYPLLLG 949
D +AL P L F L ++G + C++ LT+ G +AFKVKTT+P+RYLVRPNQG+VAP VSI+L+ D+ L + + + G + +KF+VQ A + ES G +W +A + + + + S+ S+ A++ +G + F +G + + MS DQ+ + + LRRKYD+LV+F++NLTAE+D++ +L TK DL RE R LE + ++ G+R +++ S G+SL +L+ A+ +F+ + T +L G
Sbjct: 3 DLPYALSISPDSALQFNLTPDADNGDGASRCIMTLTHPRKDGKGGGYLAFKVKTTQPRRYLVRPNQGIVAPGSSETVSILLVDKDRQQLRATYNRLGQSALDHSKDKFLVQSCAVPDDFAAQFKNESRGEGGQYKKELVDALTSMWNKATSGGSEISVFNKKLHVKHSVGGSAGSGGTPAASASSPXSSGGGLPATFDSGKRNNA--------DKMSPDQLQDEVSSLRRKYDELVAFSVNLTAERDILNNTLEQTKRDLNRESATRTALEKQGLKVGSR-------SASTRSGEAGGYSLKTLLLFVAMTFVFSVKGTNTGALKVLKG 316
BLAST of mRNA_E-siliculosus-1a_F_contig1081.570.1 vs. uniprot
Match: A0A1E7FVV3_9STRA (MSP domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVV3_9STRA) HSP 1 Score: 109 bits (273), Expect = 8.930e-23 Identity = 80/226 (35.40%), Postives = 115/226 (50.88%), Query Frame = 2 Query: 158 ESVAFKVKTTKPKRYLVRPNQGVVAPSEDLAVSIVLLAHDKVGLISEFM---QTGGCNETNKFMVQALPLQ--------GESATAGAVPPGLWEE-----AKARVQQKKLVV-HFTFPRPSIPPSSAETLKQASNGVRDAIAGDSSRSRFATGTEDGLQGSAGGDGNDMSQDQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLAREQQARKLLETK 784
E +AFKVKTT+P+RYLVRPNQG++AP +SI+L+ DK L+ + Q+G + +KF+VQ+ + G +W + A +Q KKL V H PS+ +S + S GV R T + +MS DQ+ ++ + LRRKYD+LVSF++NLTAE+D++ +L TK D RE AR LE K
Sbjct: 11 EFIAFKVKTTQPRRYLVRPNQGLIAPGTSETISILLVEKDKQALLQSYERLGQSGLDHSKDKFLVQSCTVDKTFAAKKLGSQTDLYDALTTMWNSVTSGGSSAALQNKKLHVRHIVSTSPSLAGTSNTS---GSKGVAP---------RLETTQHSNMV--------EMSADQISSELSNLRRKYDELVSFSVNLTAERDILSNTLEQTKRDYNREMAARSALENK 216
BLAST of mRNA_E-siliculosus-1a_F_contig1081.570.1 vs. uniprot
Match: A0A1Z5K8X9_FISSO (Vesicle-associated membrane protein-associated protein A n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8X9_FISSO) HSP 1 Score: 109 bits (272), Expect = 1.210e-22 Identity = 85/290 (29.31%), Postives = 139/290 (47.93%), Query Frame = 2 Query: 65 LECLPSKVLDFALEDGAEPAECVLHLTNNGSES--VAFKVKTTKPKRYLVRPNQGVVAPSEDLAVSIVLLAHDKVGLISEFMQTGGCN---ETNKFMVQALPLQGESATAGAVPPGLWEEAKARVQQKKLVVHFTFPRPSIPPSSAETLKQASNGVRDAIAGDSSRSRFATGTEDGLQGSAGGDGN---DMSQDQMWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLAREQQARKLLETKMMEPGARRPAGSVVGSTSPSESRSGFSLFFVLIVAALALFAG 910
L+ P L F L + + C L L + + S +AFKVKTT+P+RYLVRPNQG++ P V I+L+ +K L+ + + G +KF+VQ++ + S A A V P +S + V+ +AG+ +G+ DG G++ +++QDQ A+ +RRKYD+LV+F++NLTAE+D++ +L TK DL RE L +T + + R + GS P+ +G + V +++ + F G
Sbjct: 13 LDLNPDSTLQFTLSNQEQSPSCSLELRHPDASSAPIAFKVKTTQPRRYLVRPNQGLIEPGGAQTVQILLVEKEKNSLLQSYERLGQPTLDQSKDKFLVQSVAILDASKLASLKDYDELTSLWATVGNS-------------PSTSTSAVANKKLHVKHVVAGNKK-----SGSGDGAHGNSSISREPIENLTQDQAKAELTNMRRKYDELVAFSVNLTAERDMLNNTLEQTKRDLNRE-----LSKTAAQDNASGRGRAAGNGSAKPN---AGVTFVLVFLLSMASFFGG 276
BLAST of mRNA_E-siliculosus-1a_F_contig1081.570.1 vs. uniprot
Match: A0A6H5KZG7_9PHAE (MSP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG7_9PHAE) HSP 1 Score: 110 bits (275), Expect = 2.100e-22 Identity = 106/330 (32.12%), Postives = 152/330 (46.06%), Query Frame = 2 Query: 89 LDFALEDGAEPAECVLHLTNNGSESVAFKVKTTKPKRYLVRPNQGVVAPSEDLAVSIVLLAHDKVGLISEFMQTGGC--NETNKFMVQALPL-QGESATAGAVPPGLWEEA---------KARVQQKKLVVHFTFPR--------------PSIPPSSAETLKQASNGVRDAIAGDSSR-----SRFATGTEDG-----------LQGSAGGDGNDMSQDQ------MWAQAAELRRKYDDLVSFTINLTAEKDLIQRSLGATKEDLAREQQARKLLETK-MMEPGARRPAGSVVGSTSPS-----ESRSGFSLFFVLIVAALALFAGQW 916
L F L ++P CVL+++N +VAFKVKTT+P+RYLVRPNQG++ P E AV++ L+ + LI E +QT ++KF+VQ + L GE+A +V EA K ++ KKL V + S+ S A T+ S G A G + +R A G+ +G G GG +S+ + + L KYDDLV++T NLT E+D + SL K+ L RE R LE+K M+ G + GS G P + GF L + IVA++ F G W
Sbjct: 20 LSFELFPNSQPG-CVLYVSNAAGVTVAFKVKTTEPRRYLVRPNQGMIGPGEREAVNVYLIEKECNLLIHEGVQTPSSLGKVSDKFLVQTVGLGDGEAALLTSVAAAKQTEALTKIWATFNKTAIRNKKLNVRVSLASGAAKSLSAANNTAAASVAQSPARTVGSDSGGATFASPGSQTSPSGVAARGAYGSRNGGXXXXXXXXXXXGGGGGGSRGGVSRAGGVGGAGLDENSRVLANKYDDLVNYTANLTEERDELNASLEEAKKALQREMATRIALESKGQMQQGRK---GSSRGGVRPPVNHQRDGGGGFGLVTLSIVASIFFFLGHW 345 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1081.570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1081.570.1 >prot_E-siliculosus-1a_F_contig1081.570.1 ID=prot_E-siliculosus-1a_F_contig1081.570.1|Name=mRNA_E-siliculosus-1a_F_contig1081.570.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=309bp MAAQDALFALECLPSKVLDFALEDGAEPAECVLHLTNNGSESVAFKVKTTback to top mRNA from alignment at E-siliculosus-1a_F_contig1081:26134..37183- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1081.570.1 ID=mRNA_E-siliculosus-1a_F_contig1081.570.1|Name=mRNA_E-siliculosus-1a_F_contig1081.570.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=11050bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1081:26134..37183- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1081:26134..37183- >mRNA_E-siliculosus-1a_F_contig1081.570.1 ID=mRNA_E-siliculosus-1a_F_contig1081.570.1|Name=mRNA_E-siliculosus-1a_F_contig1081.570.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1854bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1081:26134..37183- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |