mRNA_E-siliculosus-1a_F_contig1081.567.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1081.567.1 vs. uniprot
Match: D8LLY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY1_ECTSI) HSP 1 Score: 719 bits (1856), Expect = 2.420e-250 Identity = 435/525 (82.86%), Postives = 443/525 (84.38%), Query Frame = 1 Query: 1 AGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAAVGNGETKTPEGKPSPVMLQLLAACRAAPRDKENGLPLGAAAAA----GDRSERLIGEHKGREXXXXXXXXXXXXXXXX-RRGTTWRGVGVEGDGVPPRVTLRKRRGDHGGTNGTSVSGMGNGSG-EDANEPASSVSSEPISSATVGEREGDRQSRERQNDGDAEESRFGGLLLRKQPTAADGKDRGEDNGGAQGRWEQHFDGRMDESSYDFSENVESVRGAGEGLMVATAASGVDGGXXXXXXXXXXXXXGG--VTTENTALVEQAGVYDRSCEGEEDDGPRRGEGNGFSRHAGANDNPYDGXXXXX--LRXXXXXSLAGFXXXSDNGGGVEKEPRSSVDGGVASGVDEWNEDCYEDDDFDXXXXXXXXXXXXXXXSAGGNSAADVAAKVAANAGDGDVEEEALLTGGDGTYQDDLFDPEGSRGRVSAEQEERIADLEWEARVGLSADSSVSASPMEEDGMDGPAYEIVDAQSI 1545
AGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGA VG GE KTPEGK SPVMLQLLAACRAAPRDKEN PLGAAA A GDRSERLIGEHKG E RR TTWRGVGVEGDGVPPRVTLRKRRGDHGGTNGTSV GMGNGSG EDANEPASSVSSEPISSAT G REGDRQSRER++DGDAEESRFGGLLLRKQPTAAD KD GEDNGG QGRWE HFDGRMDE SYDFSENVESVRG GE +VA AASGVDG XXX XXXXX VTTENTA+VEQAGVYDRS EGEEDDG RR EG+ FSRHAGAND+PY G LR SLAGF SDNG GVEKEPRSSVDGGVASGVDEWNED YEDDD XXXXXXXXXXXXXXX NSAADVAAKVAANAGDG+VEEEALLTGGDGT+QD LFDPEGSRGRVSAEQEERIADLEWEARVGLSADSSVSASPMEEDGMDGPAYEIVDAQSI
Sbjct: 3 AGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAVVGKGEMKTPEGKTSPVMLQLLAACRAAPRDKENEFPLGAAATATATAGDRSERLIGEHKGWEGEEGRQEAEEEEGEDGGRRSTTWRGVGVEGDGVPPRVTLRKRRGDHGGTNGTSVCGMGNGSGGEDANEPASSVSSEPISSATAGVREGDRQSRERESDGDAEESRFGGLLLRKQPTAADDKDGGEDNGGGQGRWEHHFDGRMDEDSYDFSENVESVRGGGEDPIVAAAASGVDGDGXXXESISXXXXXXXXXVTTENTAIVEQAGVYDRSYEGEEDDGHRREEGDRFSRHAGANDSPYGGGGGGDGALRNGNGDSLAGFGGSSDNGVGVEKEPRSSVDGGVASGVDEWNEDYYEDDDXXXXXXXXXXXXXXXXXXXXXNSAADVAAKVAANAGDGEVEEEALLTGGDGTHQDGLFDPEGSRGRVSAEQEERIADLEWEARVGLSADSSVSASPMEEDGMDGPAYEIVDAQSI 527
BLAST of mRNA_E-siliculosus-1a_F_contig1081.567.1 vs. uniprot
Match: A0A6H5JFJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFJ8_9PHAE) HSP 1 Score: 690 bits (1781), Expect = 2.570e-238 Identity = 416/519 (80.15%), Postives = 434/519 (83.62%), Query Frame = 1 Query: 4 GRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAAVGNGETKTPEGKPSPVMLQLLAACRAAPRDKENGLPLGAAAAAGDRSERLIGEHKGREXXXXXXXXXXXXXXXXRRGTTWRGVGVEGDGVPPRVTLRKRRGDHGGTNGTSVSGMGNGSG-EDANEPASSVSSEPISSATVGEREGDRQSRERQNDGDAEESRFGGLLLRKQPTAADGKDRGEDNGGAQGRWEQHFDGRMDESSYDFSENVESVRGAGEGLMVATAASGVDGGXXXXXXXXXXXXXGG----VTTENTALVEQAGVYDRSCEGEEDDGPRRGEGNGFSRHAGANDNPYDGXXXXXLRXXXXXSLAGFXXXSDNGGGVEKEPRSSVDGGVASGVDEWNEDCYEDDDFDXXXXXXXXXXXXXXXSAGGNSAADVAAKVAANAGDGDVEEEALLTGGDGTYQDDLFDPEGSRGRVSAEQEERIADLEWEARVGLSADSSVSASPMEEDGMDGPAYEIVDAQSI 1545
GRL+LQVVADFLEHWELHQTLSVLKLETDMATED LSTEELGSIVANGAAVG GETKTP+GKPSPVMLQLLAACRAAPRD+ENGLPLGAAAA DRSERLIGE KGR+ RRGTTWRGVGVEGDGVPPRVTLRKRRGDHGGT+GTSVSGMGNGSG EDANEPA SV SEP+SSAT GEREGDRQSRER+NDGDAEESRFGGLLLR+QPTAAD RGED G Q RWE HFDGRMDESSYDFSENVESV+GAGE MVA XXXXXXXXXXXXX VT+EN ALVEQAGVYDRSCEG+EDDGPRR EG+ FS+HAGAN++ XXXX LR SLAGF SDNGGGVEKEPRSSVDGGVASGVDEWNED YEDDDFD XXXXX X G SAADVAAKVAANAGDG+VE+EALL G GT+QD FDPEGSRGRVSAEQEERIADLEWEARVGLSADSSVSASPMEEDGMDGPAYEIVDAQSI
Sbjct: 61 GRLALQVVADFLEHWELHQTLSVLKLETDMATEDFLSTEELGSIVANGAAVGKGETKTPDGKPSPVMLQLLAACRAAPRDRENGLPLGAAAA--DRSERLIGEDKGRKEEEGRQEAEEGEEDGGRRGTTWRGVGVEGDGVPPRVTLRKRRGDHGGTSGTSVSGMGNGSGGEDANEPAWSVPSEPVSSATAGEREGDRQSRERENDGDAEESRFGGLLLREQPTAADDIYRGEDKSGGQDRWEHHFDGRMDESSYDFSENVESVKGAGEDPMVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXVTSENAALVEQAGVYDRSCEGKEDDGPRREEGDRFSKHAGANNSYGXXXXXXVLRNGNGDSLAGFGGSSDNGGGVEKEPRSSVDGGVASGVDEWNEDYYEDDDFDGXXXXXIXNDD------GDISAADVAAKVAANAGDGEVEDEALLAEGGGTHQDGFFDPEGSRGRVSAEQEERIADLEWEARVGLSADSSVSASPMEEDGMDGPAYEIVDAQSI 571
BLAST of mRNA_E-siliculosus-1a_F_contig1081.567.1 vs. uniprot
Match: D7FK22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK22_ECTSI) HSP 1 Score: 130 bits (326), Expect = 2.530e-32 Identity = 66/70 (94.29%), Postives = 66/70 (94.29%), Query Frame = 1 Query: 1 AGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAAVGNGETKTPEGKPSPVMLQ 210
AGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGA VG GE KTPEGK SPVMLQ
Sbjct: 3 AGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAVVGKGEMKTPEGKTSPVMLQ 72 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1081.567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1081.567.1 >prot_E-siliculosus-1a_F_contig1081.567.1 ID=prot_E-siliculosus-1a_F_contig1081.567.1|Name=mRNA_E-siliculosus-1a_F_contig1081.567.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=516bp AGRLSLQVVADFLEHWELHQTLSVLKLETDMATEDLLSTEELGSIVANGAback to top mRNA from alignment at E-siliculosus-1a_F_contig1081:527..4694+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1081.567.1 ID=mRNA_E-siliculosus-1a_F_contig1081.567.1|Name=mRNA_E-siliculosus-1a_F_contig1081.567.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4168bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1081:527..4694+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1081:527..4694+ >mRNA_E-siliculosus-1a_F_contig1081.567.1 ID=mRNA_E-siliculosus-1a_F_contig1081.567.1|Name=mRNA_E-siliculosus-1a_F_contig1081.567.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3096bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1081:527..4694+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |