mRNA_E-siliculosus-1a_F_contig10809.566.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10809.566.1 vs. uniprot
Match: D8LJG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG8_ECTSI) HSP 1 Score: 664 bits (1713), Expect = 6.550e-233 Identity = 325/332 (97.89%), Postives = 326/332 (98.19%), Query Frame = 1 Query: 1 RWSCHKCNMHHRMFCPLVENAYSDEGVKLPKMQCKTCPEKDGKGGSXXEKKKRRKMHDVFDKVAAFPEEDQSDADMKSFLKVYYSHSVGVDDLWTHVGTKEPAKLLFLNPGADKTLLPDNATTLARIRDLTRALVASGSLHASGTVVCALPAPVYEHAHRWAGAFKQAGTALEVEDHPMLVEFESRGGGRPGHKSDCRHLTGRVHQFLVAHQATTGDSIPSVRFTCNQTVTADDVHGAESSSGPCLNLMKAVPFENALSPFPPRLLTMCINRFTNLQDTVVSTCGDRDKTIETALSLGRKVEVFPVDDRNVDEMRERVKDAFDIAWADGVFK 996
RWSCHKCNMHHRMFCPLVENAYSDEGV+LPKMQCKTCPEKDGKGGS EKKKRRKMHDVFDKVAAFPEEDQSDADMKSFLKVYYSHSVGVDDL THVGTKEPAKLLFLNPGADKTLLPDNATTLARIRDLTRALVASGSLHASGTVVC LP PVYEHAHRWAGAFKQAGTALEVEDHPMLVEFESRGGGRPGHKSD RHLTGRVHQFLVAHQATTGDSIPSVRFTCNQTVTADDVHGAESSSGPCLNLMKAVPFENALSPFPPRLLTMCINRFTNLQDTVVSTCGDRDKTIETALSLGRKVEVFPVDDRNVDEMRERVKDAFDIAWADGVFK
Sbjct: 254 RWSCHKCNMHHRMFCPLVENAYSDEGVRLPKMQCKTCPEKDGKGGSGGEKKKRRKMHDVFDKVAAFPEEDQSDADMKSFLKVYYSHSVGVDDLLTHVGTKEPAKLLFLNPGADKTLLPDNATTLARIRDLTRALVASGSLHASGTVVCDLPTPVYEHAHRWAGAFKQAGTALEVEDHPMLVEFESRGGGRPGHKSDRRHLTGRVHQFLVAHQATTGDSIPSVRFTCNQTVTADDVHGAESSSGPCLNLMKAVPFENALSPFPPRLLTMCINRFTNLQDTVVSTCGDRDKTIETALSLGRKVEVFPVDDRNVDEMRERVKDAFDIAWADGVFK 585
BLAST of mRNA_E-siliculosus-1a_F_contig10809.566.1 vs. uniprot
Match: A0A6H5KN26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN26_9PHAE) HSP 1 Score: 658 bits (1698), Expect = 1.070e-225 Identity = 327/341 (95.89%), Postives = 327/341 (95.89%), Query Frame = 1 Query: 1 RWSCHKCNMHHRMFCPLVENAYSDEGVKLPKMQCKTCPEKDGKGGSXXEKKKRRKMHDVFDKVAAFPEEDQSDADMKSFLK---------VYYSHSVGVDDLWTHVGTKEPAKLLFLNPGADKTLLPDNATTLARIRDLTRALVASGSLHASGTVVCALPAPVYEHAHRWAGAFKQAGTALEVEDHPMLVEFESRGGGRPGHKSDCRHLTGRVHQFLVAHQATTGDSIPSVRFTCNQTVTADDVHGAESSSGPCLNLMKAVPFENALSPFPPRLLTMCINRFTNLQDTVVSTCGDRDKTIETALSLGRKVEVFPVDDRNVDEMRERVKDAFDIAWADGVFK 996
RWSCHKCNMHHRMFCPLVENAYSDEGVKLPKMQCKTCPEKDGKGGS XEKKKRRKMHDVFDKVA FPEEDQSDADMKSFLK VYYSHSVGVDDL THVGTKEPAKLLFLNPGADKTLLPDNATTLARIRDLTRALVASGSLHASGTVVCALP PVYEHAHRWAGAFKQAGTALEVEDHPMLVEFESRGGGRPGHKSD RHLTGRVHQFLVAHQATTGDSIPSVRFTCNQTVTADDVHGAESSSGPCLNLMKAVPFENALSPFPPRLLTMCINRFTNLQDTVVSTCGDRDKTIETALSLGRKVEVFPVDDRNVDEMRERVKDAFDIAWADGVFK
Sbjct: 629 RWSCHKCNMHHRMFCPLVENAYSDEGVKLPKMQCKTCPEKDGKGGSGXEKKKRRKMHDVFDKVAVFPEEDQSDADMKSFLKDQNTHVHERVYYSHSVGVDDLLTHVGTKEPAKLLFLNPGADKTLLPDNATTLARIRDLTRALVASGSLHASGTVVCALPTPVYEHAHRWAGAFKQAGTALEVEDHPMLVEFESRGGGRPGHKSDRRHLTGRVHQFLVAHQATTGDSIPSVRFTCNQTVTADDVHGAESSSGPCLNLMKAVPFENALSPFPPRLLTMCINRFTNLQDTVVSTCGDRDKTIETALSLGRKVEVFPVDDRNVDEMRERVKDAFDIAWADGVFK 969
BLAST of mRNA_E-siliculosus-1a_F_contig10809.566.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE) HSP 1 Score: 124 bits (310), Expect = 1.300e-27 Identity = 78/232 (33.62%), Postives = 117/232 (50.43%), Query Frame = 1 Query: 310 KLLFLNPGADKTLLPDNATT---LARIRDLTRALVASGSLHASGTVVCALPAPVYEHAHRWAGAFKQAGTALEVEDHPMLVEFESRGGGRPGHKSDCRHLTGRVHQFLVAHQATTGDSIPSVRFTCNQTVTADDVHGAESSSGPCLNLMKAVPFENALSPFPPRLLTMCINRFTNLQDTVVSTCGDRDKTIETALSLGRKVEVFPVDDRNVDEMRERVKDAFDIAWADGVFK 996
KL+ ++ GA++ LL + T L R+ D R G +H GT+ +P P H HR A + A L VEDHP+++ + R GGRP +++ HL + L+ H FTCN+ VT DD G S + P + LM V +E A + R L INR+T+ DTV S +R +E AL R+VEVF + + +E+R+ + +F A+ G +K
Sbjct: 354 KLVIVSIGAEQRLLRTSEATNTHLRRVIDNVR-----GRMHPDGTIALVVPHPWSAHFHRLQEAVRDACVGLVVEDHPLMLNYSKRVGGRPPIRAE-NHLKNHLDMVLLIHNE-------GATFTCNKRVTVDDPFGFGSDASPSMQLMTDVEYEGAATDIVMRPLHFLINRYTHAGDTVASLSAERHNVVEAALERSRRVEVFVANPNSKEEVRKNLLASFSRAYKAGKWK 572
BLAST of mRNA_E-siliculosus-1a_F_contig10809.566.1 vs. uniprot
Match: A0A6H5JK41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK41_9PHAE) HSP 1 Score: 120 bits (302), Expect = 1.600e-26 Identity = 83/242 (34.30%), Postives = 122/242 (50.41%), Query Frame = 1 Query: 307 AKLLFLNPGADKTLLPDNATTLARIRDLTRALVASGSLHASGTVVCALPAPVYEHAHRWAGAFKQAGTALEVEDHPMLVEFESRGGGRPGHKSDCRHLTGRVHQFLVAHQATTGDSIPSVRFTCNQTVTADDVHG---AESSSGPCLN----------LMKAVPFENALSPFPPRLLTMCINRFTNLQDTVVSTCGDRDKTIETALSLGRKVEVFPVDDRNVDEMRERVKDAFDIAWADGVF 993
AKL+F+ G LL +N + ++ L V LH GTV+ +LP P+Y+H +Q G + VEDH ++VE+ SRGGG +S + + G + ++VAH +GD + FTCN TVT G A SS G + LM VP + + ++ I R+T DTVVS + D +E AL+LGRKVE F V + + RV++A++ AW G+F
Sbjct: 641 AKLIFVPLGLHDHLLQENPSAQVHMKGLLYH-VCKELLHPEGTVLVSLPVPIYKHHRCIVEHLQQPGLGMVVEDHGLVVEYGSRGGGLTA-ESKKKFIGGALDHYIVAHHNASGDG-GGMNFTCNDTVTPQSFTGKLSAGSSDGSTWSTASGRRIPSPLMGDVPHKGVTRGYHDNVVQFAIQRWTKAGDTVVSMHAESDGVVEGALNLGRKVEAFLVASEHHGAVTTRVEEAWEGAWRKGLF 879
BLAST of mRNA_E-siliculosus-1a_F_contig10809.566.1 vs. uniprot
Match: D7FZ29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ29_ECTSI) HSP 1 Score: 119 bits (297), Expect = 5.240e-26 Identity = 83/242 (34.30%), Postives = 121/242 (50.00%), Query Frame = 1 Query: 307 AKLLFLNPGADKTLLPDNATTLARIRDLTRALVASGSLHASGTVVCALPAPVYEHAHRWAGAFKQAGTALEVEDHPMLVEFESRGGGRPGHKSDCRHLTGRVHQFLVAHQATTGDSIPSVRFTCNQTVTADDVHG---AESSSGPCLN----------LMKAVPFENALSPFPPRLLTMCINRFTNLQDTVVSTCGDRDKTIETALSLGRKVEVFPVDDRNVDEMRERVKDAFDIAWADGVF 993
AKL+F+ G LL +N + ++ L V LH GTV+ +LP P+Y+H +Q G + VEDH ++VE+ SRGGG +S + + G + ++VAH GD + FTCN TVT G A SS G + LM VP + + ++ I R+T DTVVS + D +E AL+LGRKVE F V + + RV++A++ AW G+F
Sbjct: 140 AKLVFVPLGLHDHLLQENPSAQVHMKGLLYH-VCKELLHPEGTVLVSLPVPIYKHQRCIVEHLQQPGLGMVVEDHGLVVEYGSRGGGLTA-ESKKKFIGGALDHYIVAHHNGCGDG-GGMNFTCNDTVTPQSFTGRRSAGSSDGSTWSTASGRRIPSPLMGDVPRKGVTRGYHDNVVQFAIQRWTKAGDTVVSMHAESDGVVECALNLGRKVEAFLVASEHHGAVTTRVEEAWEGAWRKGLF 378
BLAST of mRNA_E-siliculosus-1a_F_contig10809.566.1 vs. uniprot
Match: D7FYZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ0_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 2.230e-10 Identity = 57/197 (28.93%), Postives = 90/197 (45.69%), Query Frame = 1 Query: 430 GTVVCALPAPVYEHAHRWAGAFKQAGTALEVEDHPMLVEFES-RGGGRPGHKSDCRHLTGRVHQFLVAHQATTGDSIPSVRFTCNQTVTADDVHGAESSSGPCL-------NLMKAVPFENALSPFPPRLLTMCINRFTNLQDTVVSTCGDRDKTIETALSLGRKVEVFPVDDRNVDEMRERVKDAFDIAWADGVFK 996
GTV CA+P P +E AF++ A +VE +P+++ + S GG +P +K H+ + LV H+ S + FTCN+ V DV G P NL P + + FP I R+TN DTV+ + A+S GR+VE + +D+ ++ + AF A + G+F+
Sbjct: 78 GTVACAIPRPWFEKGALVYDAFRELSDA-DVEANPLVIYYTSVSGGAQPRNKEG--HMRNQQELVLVVHRR---GSDGTTGFTCNKRVVVTDVFGHSQGPVPHARHVIHLDNLPPGAPNGGSRTFFPSVACQYLIARYTNAGDTVLGIGVETTTAPVDAISRGRRVEFYVMDESKRAALQTNIASAFHKAHSSGMFQ 268 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10809.566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10809.566.1 >prot_E-siliculosus-1a_F_contig10809.566.1 ID=prot_E-siliculosus-1a_F_contig10809.566.1|Name=mRNA_E-siliculosus-1a_F_contig10809.566.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=324bp MHHRMFCPLVENAYSDEGVKLPKMQCKTCPEKDGKGGSGGEKKKRRKMHDback to top mRNA from alignment at E-siliculosus-1a_F_contig10809:69..1943+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10809.566.1 ID=mRNA_E-siliculosus-1a_F_contig10809.566.1|Name=mRNA_E-siliculosus-1a_F_contig10809.566.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1875bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10809:69..1943+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10809:69..1943+ >mRNA_E-siliculosus-1a_F_contig10809.566.1 ID=mRNA_E-siliculosus-1a_F_contig10809.566.1|Name=mRNA_E-siliculosus-1a_F_contig10809.566.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1944bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10809:69..1943+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |