mRNA_E-siliculosus-1a_F_contig1080.563.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot
Match: D7FR20_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR20_ECTSI) HSP 1 Score: 511 bits (1316), Expect = 3.400e-178 Identity = 271/279 (97.13%), Postives = 271/279 (97.13%), Query Frame = 1 Query: 67 MITGAPTATMLLMLSPAARAFVRPVGPAALSGVRWSKVNSASHQTRAKSSEPTKMALESEEDKCMYAFGAALATQTDQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVKASALVHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGPIPANATLVFEVELLEIEGGAPTPQAAPSTEAAAPPQE 903
MI GAPTATMLLMLSPAARAFVRPVGPAAL GVRWSKVNSASHQTRAKSS PTKMALESEEDKCMYAFGAALATQTDQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVK VHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGPIPANATLVFEVELLEIEGGAPTPQAAPSTEAAAP QE
Sbjct: 1 MIAGAPTATMLLMLSPAARAFVRPVGPAALCGVRWSKVNSASHQTRAKSSAPTKMALESEEDKCMYAFGAALATQTDQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVK----VHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGPIPANATLVFEVELLEIEGGAPTPQAAPSTEAAAPSQE 275
BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot
Match: A0A835ZCE7_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCE7_9STRA) HSP 1 Score: 224 bits (572), Expect = 4.310e-67 Identity = 122/206 (59.22%), Postives = 153/206 (74.27%), Query Frame = 1 Query: 223 TKMALESEEDKCMYAFGAALATQTDQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVKASALVHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGPIPANATLVFEVELLEI 840
T M+L S+ D+ YA G ALA QT +F+ LLT EER++ + G +D WL+ +++D A++VN +L+ R + M+ G FLADAAKE+GA QTASG+V++T+ EG G SP TD V+ V+YHGTL D +VFDSS RG PISFPLNGVIKGWTEG+QLMKVGG +KLTIPPELAYG +GTGPIP +ATLVFEVELL I
Sbjct: 3 THMSL-SKGDETFYALGVALAQQTAKFKDLLTPEERELVVQGMTDGWLDKPIKVDPEPLADQVNGMLEQRMSKAVEQMSAAGAQFLADAAKEDGATQTASGLVIKTIKEGDGPSPKATDKVE----VNYHGTLPDNTVFDSSRDRGQPISFPLNGVIKGWTEGLQLMKVGGVAKLTIPPELAYGAQGTGPIPPHATLVFEVELLGI 203
BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot
Match: A0A6B1CMQ1_9BACT (Peptidyl-prolyl cis-trans isomerase n=4 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6B1CMQ1_9BACT) HSP 1 Score: 197 bits (501), Expect = 3.240e-56 Identity = 118/232 (50.86%), Postives = 154/232 (66.38%), Query Frame = 1 Query: 154 LSGVRW-SKVNSASHQTRAKSSEPTKMALESEEDKCMYAFGAALATQT-DQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVKASALVHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGPIPANATLVFEVELLEIE 843
L GV W S V A + AK+S P K +E+EE+K +YA G A+A + + FR + E + + GF+D + ++ K+N +LQ R + ++ A +G F AA+EEGAVQT SG++ + + GTGASP TD VK VHYHG+LIDG+VFDSSV RG P++F L+ VIKGWTEG+Q+MKVGGK+KLTIPPELAYG G IPANATL+FEVELL IE
Sbjct: 7 LLGVGWTSLVLLACNGQEAKTSTPAK--VETEEEKVLYALGLAIAQNSLEPFRGQFSDAEIAVVMQGFADAVKGGEPIVSLQEFGPKINPMLQERLQKVQAQAAVEGEAFREKAAQEEGAVQTTSGLIFKELTAGTGASPKATDRVK----VHYHGSLIDGTVFDSSVERGEPVTFALDQVIKGWTEGLQMMKVGGKAKLTIPPELAYGPGGRSGIPANATLIFEVELLGIE 232
BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot
Match: A0A7S3TIY2_9SPIT (Peptidylprolyl isomerase n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TIY2_9SPIT) HSP 1 Score: 186 bits (471), Expect = 5.100e-52 Identity = 108/204 (52.94%), Postives = 138/204 (67.65%), Query Frame = 1 Query: 232 ALESEEDKCMYAFGAALATQTDQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVKASALVHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGP-IPANATLVFEVELLEI 840
AL +E+ K YA G + Q F+ E + L G + S ++ ++Y K +LQA+ A + AEKG FL +AAKEEGAVQT SG+VV+T+ EGTG+SP +TV+ VHY G LIDGSVFDSS RG PISFPL+GVI GWTEG+QLMKVGGK+KLTIP ++AYG++G+ P IP ATLVF+VELL+I
Sbjct: 16 ALTTEDAKAYYAIGYNIGKQLADFKTCEPTELDDM-LAGIKASLVGSEPEVPLAEYVPKAMELLQAKAVAAAEVQAEKGREFLQEAAKEEGAVQTDSGLVVKTITEGTGSSPTAAETVQ----VHYEGKLIDGSVFDSSYARGEPISFPLSGVIAGWTEGLQLMKVGGKAKLTIPSDIAYGDRGSPPAIPPKATLVFQVELLDI 214
BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot
Match: A0A7S3AXL5_9EUKA (Peptidylprolyl isomerase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AXL5_9EUKA) HSP 1 Score: 184 bits (467), Expect = 3.830e-51 Identity = 100/206 (48.54%), Postives = 133/206 (64.56%), Query Frame = 1 Query: 223 TKMALESEEDKCMYAFGAALATQTDQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVKASALVHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGPIPANATLVFEVELLEI 840
T+M LE++E+K +Y GA + Q + + + +E L+G D + Q+D +YA + +A+ + + + A G+ FL AA EEGAV+T +G+V V G+G SP TD V+ VHY G L+DG+VFDSS+ RG PI FPLNGVIKGWTEG+Q MK GGK+KLTIP EL YG GTGPIP NA LVF+VELL +
Sbjct: 38 TRMVLETDEEKALYVLGANVGRQLGELQ-CMDSDELDSVLLGMKDSIMGEEPQVDIQKYAPLAQQMFKAKQDVIAEKAASAGMMFLEAAASEEGAVKTDTGLVFLETVTGSGDSPTATDKVR----VHYEGKLVDGTVFDSSIARGEPIEFPLNGVIKGWTEGLQRMKPGGKAKLTIPSELGYGSGGTGPIPPNAVLVFDVELLAV 238
BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot
Match: A0A836XH01_9BACT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Candidatus Handelsmanbacteria bacterium TaxID=2099671 RepID=A0A836XH01_9BACT) HSP 1 Score: 183 bits (465), Expect = 6.270e-51 Identity = 108/210 (51.43%), Postives = 137/210 (65.24%), Query Frame = 1 Query: 238 ESEEDKCMYAFGAALATQT-DQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQAR-----NEALEKSMAEK--GVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVKASALVHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGPIPANATLVFEVELLEIE 843
++EE+K YA G ++A T F+ T EE + GF +E +D + Y +++N+ LQ R E+++ EK GV F+ AA E GAV+TASG+V V G+GA P PTD VK VHYHGTLIDG+VFDSSV R P+ FPLN VI GWTEGV +MKVGGK+KL IPPELAYG++ TG IP +TL+FEVELL IE
Sbjct: 28 QTEEEKKRYAIGLSVAGNTLGTFKGEFTAEEVAMIAEGFKAGMVEGEPAIDMNDYGQELNDYLQQRFANVQARTQEQAVGEKEMGVAFIEQAAAEPGAVKTASGLVYIEQVAGSGAQPQPTDKVK----VHYHGTLIDGTVFDSSVERNEPVDFPLNQVIAGWTEGVAMMKVGGKAKLVIPPELAYGDRPTGKIPPGSTLIFEVELLGIE 233
BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot
Match: A0A7S3SHL9_EMIHU (Peptidylprolyl isomerase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SHL9_EMIHU) HSP 1 Score: 180 bits (457), Expect = 1.480e-49 Identity = 105/216 (48.61%), Postives = 137/216 (63.43%), Query Frame = 1 Query: 196 QTRAKSSEPTKMALESEEDKCMYAFGAALATQTDQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVKASALVHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGP-IPANATLVFEVELLEI 840
+T + S + +LE++ DK Y+ G + Q F E + L G + L Q+ S+Y K +L + + ++MA KG LA AAKEEGAVQTASG+VVQT+ EG G +P TVK VHY G L+DGS+FDSS RG PI FPL+GVI GWTEG+QLMK GGK+KLTIP ++AYGE+G+ P IP ATL+F+VELLE+
Sbjct: 37 RTAVRRSSGVRASLETDTDKAFYSIGFNVGRQLSDFAACEPAEIDSV-LAGIRECLLGDEPQVPLSEYVPKAMTLLGEKQAKVAEAMAAKGAETLAAAAKEEGAVQTASGLVVQTLSEGKGDAPTRESTVK----VHYEGQLVDGSIFDSSYRRGEPIEFPLSGVIAGWTEGLQLMKPGGKAKLTIPSDIAYGERGSPPAIPPKATLIFQVELLEV 247
BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot
Match: A0A3C1EMQ7_9BACT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Elusimicrobia bacterium TaxID=2030800 RepID=A0A3C1EMQ7_9BACT) HSP 1 Score: 180 bits (456), Expect = 2.550e-49 Identity = 108/231 (46.75%), Postives = 141/231 (61.04%), Query Frame = 1 Query: 205 AKSSEPTKMAL--ESEEDKCMYAFGAALATQTDQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVKASALVHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGPIPANATLVFEVELLEIEGGAPTPQAAPSTEAAA 891
AKS+ P K A ++EE K YA G L+ Q F L+ E K MGF D L + Q++ Y K+N++ ++R EK FLA AAKE GA SG++ + + G+GASP DT+KA HYHGTL+DG+VFDSSV RG P FP+ GVIK W EG+ MKVGGK+KL P ++AYG++G IP ATL+FEVELLEI + P++AP T+A A
Sbjct: 30 AKSAAPVKSAEVPKTEEQKTFYALGLYLSEQVSIFN--LSAAELKYVQMGFKDAVLNNPHQVELQVYGPKLNDLAKSRVAVKSSKEKEKSKDFLAKAAKEPGAQGFPSGLIYKEIKAGSGASPTAADTIKA----HYHGTLVDGTVFDSSVQRGQPAEFPVQGVIKCWQEGIPKMKVGGKAKLICPSDIAYGDRGNSSIPGGATLIFEVELLEIVKPS-VPESAPKTQAPA 253
BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot
Match: UPI002011F464 (FKBP-type peptidyl-prolyl cis-trans isomerase n=2 Tax=Azoarcus sp. L1K30 TaxID=2820277 RepID=UPI002011F464) HSP 1 Score: 176 bits (445), Expect = 3.590e-48 Identity = 102/201 (50.75%), Postives = 128/201 (63.68%), Query Frame = 1 Query: 244 EEDKCMYAFGAALATQTDQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVKASALVHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGP-IPANATLVFEVELLEIE 843
E+ K +YA G +A QT F+ LT E + G+ D + + +D Y KVN + QAR A + A KG LA AA E+GAV+ SG V Q++ EGTGA P TDTVK VHY GTL DG+ FDSS R P FPLNGVIK WTEGV +MKVGGK++LT PP+ AYG++G G IP ATLVF++ELLE++
Sbjct: 25 EDQKTLYALGQLVARQTAVFQ--LTASELESVQKGWQDATVGAKSAVDLQVYGPKVNALGQARQAAAAEKSAAKGKELLAKAATEKGAVKAPSGFVYQSITEGTGAQPAATDTVK----VHYRGTLPDGTEFDSSYKRNEPTEFPLNGVIKCWTEGVAMMKVGGKARLTCPPDTAYGDRGAGGVIPPGATLVFDIELLEVK 219
BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot
Match: A0A1W1I0T9_9BACT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nitrospira japonica TaxID=1325564 RepID=A0A1W1I0T9_9BACT) HSP 1 Score: 176 bits (445), Expect = 3.930e-48 Identity = 104/200 (52.00%), Postives = 127/200 (63.50%), Query Frame = 1 Query: 244 EEDKCMYAFGAALATQTDQFRKLLTVEERKIGLMGFSDHWLESGMQLDHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVKASALVHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGP-IPANATLVFEVELLEI 840
++ K YA G ++ F LT E G SD L+ ++D + KVN + QAR AL + + G F+A AA E GA +T SG +V T+ EG GA+P TDTVK VHYHGTLIDG+VFDSSV RG P +FPLN VIK WTEGVQL+KVGGKSKL P +AYG++G+ P I ATLVFEVELLEI
Sbjct: 28 DDQKTFYALGLLISQSLTPFA--LTESELDFVRSGMSDGVLKKTPKVDLQAFGPKVNQLQQARASALADTEKKAGATFIAKAAAESGAKKTESGAIVTTIKEGKGATPTATDTVK----VHYHGTLIDGTVFDSSVKRGEPATFPLNQVIKCWTEGVQLIKVGGKSKLVCPSAIAYGDRGSPPTIKPGATLVFEVELLEI 221 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1080.563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1080.563.1 >prot_E-siliculosus-1a_F_contig1080.563.1 ID=prot_E-siliculosus-1a_F_contig1080.563.1|Name=mRNA_E-siliculosus-1a_F_contig1080.563.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=302bp MLTCDRDSHEQTTAVQQVNRETMITGAPTATMLLMLSPAARAFVRPVGPAback to top mRNA from alignment at E-siliculosus-1a_F_contig1080:29064..37219+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1080.563.1 ID=mRNA_E-siliculosus-1a_F_contig1080.563.1|Name=mRNA_E-siliculosus-1a_F_contig1080.563.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8156bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1080:29064..37219+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1080:29064..37219+ >mRNA_E-siliculosus-1a_F_contig1080.563.1 ID=mRNA_E-siliculosus-1a_F_contig1080.563.1|Name=mRNA_E-siliculosus-1a_F_contig1080.563.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1812bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1080:29064..37219+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |