mRNA_E-siliculosus-1a_F_contig108.560.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig108.560.1 vs. uniprot
Match: A0A6H5KLL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL9_9PHAE) HSP 1 Score: 691 bits (1783), Expect = 1.050e-242 Identity = 363/403 (90.07%), Postives = 371/403 (92.06%), Query Frame = 1 Query: 55 MWLRAGPVLLGFCSMPTGSFVLPPTPILARVYHRA---TADFRVPV-NGGEHGGFTGPGAGPLQRR--RIAPRRCRGCCNFCRGMSHAFGGATTSRATIGMRLASREENH-VSANTPSEAIPAFASNDGVSYLRNPDTGSEIWLVGVVHGQEASVELSKSVVRTTRPQVVMLELDSTRLDDLPPGEAQKAEDGLTWFMPEKKPDNAVAQGVTLEGGGDDVESSRGERWKGPFAFMSSSRAKSFVGAMKAIIDVFEEEEVSEMEFAVLEAQACGARVLLGDRDFEETKRRLVAAGLADTVGDERLDDPEALLNDSMSLSNRKKFAGLDLRKPETRETAGEHYAAMKRLSNQRALEAMVPERDEVMASNLMTLKGKPITVALVGLFHVDGIERILKRNGWNHGPA 1242
MWLRAGPVLLGFCSMPT SFVLPPTPILARV R T DFRVPV NGG HGG GPGA PLQRR RIAP+ CR C NFCRGMSHAFGGA TSRATIGMRLASRE NH V ANTPSEAIPAFASNDGVSYLRNPDTGSEIWLVGVVHGQE SVELSKSVVRTTRPQVVMLELDS+RLDDLPPGEAQKAEDGLTWFMP+K+PDNAVAQGVT GGGDDV+ RGE+WKGPFAFMSSSR KSFVGAMKAIIDVFEEEEVSEME AVLEAQACGARVLLGDRDFEETKRRLVAAGLADTVGDERLDDPEALLNDSMS+SNRK FAGLDLRKP+TRE AGEHYAAMKRLSNQRALEAMVPERDEVMA NLMTLKGKPITVALVGLFHVDGIERILKRNGWNHGPA
Sbjct: 1 MWLRAGPVLLGFCSMPTVSFVLPPTPILARVNRRGATCTTDFRVPVVNGGGHGGSAGPGAKPLQRRCSRIAPKSCRCCFNFCRGMSHAFGGAPTSRATIGMRLASREGNHHVPANTPSEAIPAFASNDGVSYLRNPDTGSEIWLVGVVHGQETSVELSKSVVRTTRPQVVMLELDSSRLDDLPPGEAQKAEDGLTWFMPQKQPDNAVAQGVTSRGGGDDVDLPRGEKWKGPFAFMSSSRVKSFVGAMKAIIDVFEEEEVSEMEVAVLEAQACGARVLLGDRDFEETKRRLVAAGLADTVGDERLDDPEALLNDSMSVSNRKTFAGLDLRKPDTREAAGEHYAAMKRLSNQRALEAMVPERDEVMARNLMTLKGKPITVALVGLFHVDGIERILKRNGWNHGPA 403
BLAST of mRNA_E-siliculosus-1a_F_contig108.560.1 vs. uniprot
Match: D7FHB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB7_ECTSI) HSP 1 Score: 546 bits (1408), Expect = 1.650e-187 Identity = 282/306 (92.16%), Postives = 292/306 (95.42%), Query Frame = 1 Query: 325 ATIGMRLASREENHVSANTPSEAIPAFASNDGVSYLRNPDTGSEIWLVGVVHGQEASVELSKSVVRTTRPQVVMLELDSTRLDDLPPGEAQKAEDGLTWFMPEKKPDNAVAQGVTLEGGGDDVESSRGERWKGPFAFMSSSRAKSFVGAMKAIIDVFEEEEVSEMEFAVLEAQACGARVLLGDRDFEETKRRLVAAGLADTVGDERLDDPEALLNDSMSLSNRKKFAGLDLRKPETRETAGEHYAAMKRLSNQRALEAMVPERDEVMASNLMTLKGKPITVALVGLFHVDGIERILKRNGWNHGPA 1242
AT GMRLAS E SAN SEA+PAF SNDGVSYLRNPDTGSEIWLVGVVHGQE SVELSKSVVRTTRPQVVMLELDS RLDDLPPGEAQKAEDGLTWFMPEK+PD+AVAQ VTLEGGGDDVE SRG+RWKGPF+FMSSSRAKSFVGA+KA++DVFEEEEVSEME AVLEAQACGARVLLGDRDFEETKRRLVAAGLADTVGDERLDDPEALLNDSMS+SNRKKFAGLDLRKPETRETAGEHYAAMKRLSNQRALEAMVPERDEVMASNLMT+KGKPITVALVGLFHVDGIERILKRNGWNHGPA
Sbjct: 2 ATNGMRLASHEGAQFSANARSEAVPAFTSNDGVSYLRNPDTGSEIWLVGVVHGQETSVELSKSVVRTTRPQVVMLELDSKRLDDLPPGEAQKAEDGLTWFMPEKQPDDAVAQYVTLEGGGDDVELSRGDRWKGPFSFMSSSRAKSFVGAIKAMVDVFEEEEVSEMEVAVLEAQACGARVLLGDRDFEETKRRLVAAGLADTVGDERLDDPEALLNDSMSVSNRKKFAGLDLRKPETRETAGEHYAAMKRLSNQRALEAMVPERDEVMASNLMTIKGKPITVALVGLFHVDGIERILKRNGWNHGPA 307
BLAST of mRNA_E-siliculosus-1a_F_contig108.560.1 vs. uniprot
Match: D7FHB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHB5_ECTSI) HSP 1 Score: 146 bits (369), Expect = 4.230e-35 Identity = 106/297 (35.69%), Postives = 143/297 (48.15%), Query Frame = 1 Query: 346 ASREENHVSANTPSEAIPAFASNDGVSYLRNPDTGSEIWLVGVVHGQEASVELSKSVVRTTRPQVVMLELDSTRLDDLPPGEAQKAEDGLTWFMPEKKPDNAVAQGVTLEGGGDDVESSRGERWKGPFAFMSSSRAKSFVGAMKAIIDVFEEEEVS---EMEFAVLEAQACGARVLLGDRDFEETKRRLVAAGLADTVGDERLDDPEALLNDSMSLSNRKKFAGLDLRKPETRETAGEHYAAMKRLSNQRALEAMVPERDEVMASNLMTLKGKPITVALVGLFHVDGIERILKRNGW 1227
AS EE ++SA+ E +P SND VSY +P S IWLVGVVHG ++ V+L + + RP+VVM+ELD+ R+ LPPGEA + +GL W+ PE++P+ + DV+ + D EEE VS E++ AV EA ACGARVLLGDRD+E T R L A AD S RK+F L EVMA NLM L+G+ TVA++G+ H+DG+E++LK +GW
Sbjct: 97 ASAEETNLSADPTQETLPECISNDAVSYWVHPAKESHIWLVGVVHGAKSGVQLVEEAIGGIRPEVVMVELDADRICVLPPGEAMETRNGLWWWAPEEEPEGSA-----------DVDE-------------DGXXXXEYAEDDXXXXD--EEESVSPMIEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADMA----------------SAKERKEFNDLT-----------------------------TSFDCEVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGW 322
BLAST of mRNA_E-siliculosus-1a_F_contig108.560.1 vs. uniprot
Match: A0A6H5K4M4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4M4_9PHAE) HSP 1 Score: 134 bits (336), Expect = 4.170e-30 Identity = 121/354 (34.18%), Postives = 163/354 (46.05%), Query Frame = 1 Query: 283 RGMSHAFGGATTSRATIGMRLASREE-----NHVSANTPSEAIPAFASNDGVSYLRNPDTGSEIWLVGVVHGQEASVELSKSVVRTTRPQVVMLELDSTRLDDLPPGEAQKAEDGLTWFMPEKKPDNAVAQGVTLEGGGDDVESSRGERWKGPF--AFMS---------SSRAKSFVGAM--KAIIDVFEEEEVS------EMEFAVLEAQACGARVLLGDRDFEETKRRLVAA------------GLADT-VGDERLDDPEA-LLNDSMS-LSNRKKFAGLDLRKPETRETAGEHYAAMKRLSNQRALEAMVPERDEVMASNLMTLKGKPITVALVGLFHVDGIERILKRNGW 1227
R + GGA S A+ AS ++ V ++ P F +D VSYL NP SE+WLVG H +S L ++V+R +PQVVM+ELD+ R+ ++ P K+ + +A G E + ER + PF AF + R F A KAI ++E + E A+ EA+ACGA++LLGDRD T RRL A G +T +G E LD +N S+ L NR+ R+ G + L N AM+ ERD+VMA NLM L GK +TVA+VGL HVDGIE IL NGW
Sbjct: 74 RALLRTIGGALASLASASALTASPQQAAAAGTAVGRRPGAKRSPTFLCDDAVSYLYNPTKQSEVWLVGTAHISNSSATLVENVIRQIKPQVVMVELDAQRVG--------------SFMKPSKQGEKTLADGTGKE------IAPPAERTRNPFFGAFFKQLLDPKVPVNDRITDFFAAALGKAISKMYESMDQKGLSSGQEFTIAINEARACGAKLLLGDRDVRITLRRLSEALRKIDLQKISQSGQMETGLGLEALDGSSVESINSSLDILKNRETM----------RKVIGFYKEEAPELYN-----AMIGERDKVMAVNLMGLDGKQVTVAVVGLAHVDGIEGILMANGW 392
BLAST of mRNA_E-siliculosus-1a_F_contig108.560.1 vs. uniprot
Match: A0A6H5LN04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN04_9PHAE) HSP 1 Score: 106 bits (265), Expect = 2.060e-21 Identity = 73/182 (40.11%), Postives = 99/182 (54.40%), Query Frame = 1 Query: 388 EAIPAFASNDGVSYLRNPDTGSEIWLVGVVHGQEASVELSKSVVRTTRPQVVMLELDSTRLDDLPPGEAQKAEDGLTWFMPEKKPDNAVAQGVTLEGGGDDVESSRGERWKGPFAFMSSSRAKSFVGAMKAIIDVFEEEEV--SEMEFAVLEAQACGARVLLGDRDFEETKRRLVAAGLADT 927
+ +P +D VS++RNP TGSEIWL+G++H E V+L +SV+R +PQVVMLELD+ R LPPG + ED L W+ P K ++G R P A + +AK + +++E V SE+ A EAQAC ARVLLGDR E +KRR A AD+
Sbjct: 86 DQLPECLQSDAVSHIRNPSTGSEIWLLGIIHQAEPYVQLVQSVIREIKPQVVMLELDAERTFLLPPGTPYQGEDKLWWWKPAK---------------------AKGRR---PGAVSNRKKAKPRKTTRNQR-NFYQDEHVGVSEIWTAGREAQACRARVLLGDRSNEVSKRREREAERADS 242
BLAST of mRNA_E-siliculosus-1a_F_contig108.560.1 vs. uniprot
Match: A0A6H5KTH2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTH2_9PHAE) HSP 1 Score: 100 bits (248), Expect = 4.830e-20 Identity = 82/233 (35.19%), Postives = 120/233 (51.50%), Query Frame = 1 Query: 544 MLELDSTRLDDLPPGEAQKAEDGLTWF--MPEKKPDNAVAQGVTLEGGGDDVESSRGERWKGPFAFMSSSRAKSFVGAMKAIIDVFEEEEVSEMEFAVLEAQACGARVLLGDRDFEETKRRLVAAGLADTVGDERLDDPEALLNDSMSLSNRKKFAGLDLRKPETRETAGEHYAAMKRLSNQ---RALEAMVPERDEVMASNLMTLKGKPITVALVGLFHVDGIERILKRNGW 1227
M+E+D R+ LPPGEA K DGL W+ + E P AV+ G + D+V+++ R G +++ K ++ + E+SE A +A ACGARVLLGDRDF+ET RR+ A +R D EA+ + S + +K +++ T+ + ++ L R +V ERDEVMASNL+ ++ TVA+VG H GI ILK NGW
Sbjct: 1 MVEIDPCRIKMLPPGEATKDGDGLWWWDAVQEAGPATAVSSGDRDK---DEVQAANTSRTPGDGLETATNAVARTRRRAKNDMNT-DGMEMSEFYAAARQAVACGARVLLGDRDFQETTRRVSDA--------DRADQEEAMSSLGDSSAGKKNTVEPRIKRRVLEGTSPALWRKLRDLEKTWKPRKFAVLVTERDEVMASNLLKVEEGQGTVAVVGAHHTIGIGGILKANGW 221
BLAST of mRNA_E-siliculosus-1a_F_contig108.560.1 vs. uniprot
Match: D7G9B8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B8_ECTSI) HSP 1 Score: 79.0 bits (193), Expect = 1.040e-13 Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 1 Query: 388 EAIPAFASNDGVSYLRNPDTGSEIWLVGVVHGQEASVELSKSVVRTTRPQVVMLELDSTRLDDLPPG 588
E +P +D VS++RNP TGSEIWL+G++H E V+L +SV+R +PQVVMLELD+ R LPPG
Sbjct: 32 ERLPECLQSDAVSHIRNPTTGSEIWLLGIIHQAEPYVQLVQSVIREIKPQVVMLELDAERAFLLPPG 98
BLAST of mRNA_E-siliculosus-1a_F_contig108.560.1 vs. uniprot
Match: L1K338_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K338_GUITC) HSP 1 Score: 79.3 bits (194), Expect = 3.180e-12 Identity = 82/276 (29.71%), Postives = 122/276 (44.20%), Query Frame = 1 Query: 412 NDGVSYLRNPDTGSEIWLVGVVHGQEASVELSKSVVRTTRPQVVMLELDSTRLDDLPPGEAQKAEDGLTWFMPEKKPDNAVAQGVTLEGGGDDVESSRGERWKGPFAFMSSSRAKSFVG-AMKAIIDVFEEEEVSEMEFAVLEAQACGARVLLGDRDFEETKRRLVAAGLADTVGDERLDDPEALLNDSMSLSNRK----KFAGLDLRKPETRETAGEHYAAMKRLSNQRALEAMVPERDEVMASNLMTLKGKPITVALVGLFHVDGIERILKRNG 1224
N V+YLR+P E++LVG VH + S E+ V+ RPQ VM+EL R + V+++ G R G +S +A + VG + ID + +EM A+ A+ GA+V+LGDRD + T RRL + L D LL+ MS S++ FA K TR+ A ++ + + A+V ERDE+MA L + + VA+VG+ H+DGIE+ K G
Sbjct: 87 NGHVAYLRHPRLQQEVYLVGSVHISKKSAEIVNEVILAVRPQAVMVELCEARKRAI----------------------------VSIDQGQQTSTLDTILRMAG----ISRQQASAMVGDKILEFIDAY--TRGNEMLVAMRAAEQVGAKVILGDRDQQTTLRRLKE--------EFNLSDVLKLLSTPMSPSSQSIFSTPFAKQKSEKEITRDDARRMLQRLRDSCSSGMISALVDERDEIMAQTLARCNFQRV-VAVVGMAHMDGIEKRYKDEG 319
BLAST of mRNA_E-siliculosus-1a_F_contig108.560.1 vs. uniprot
Match: A0A7S3Q1T6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q1T6_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 3.310e-11 Identity = 98/335 (29.25%), Postives = 140/335 (41.79%), Query Frame = 1 Query: 343 LASREENHVSANTPSEAIPAFAS---NDGVSYLRNPDTGSEIWLVGVVHGQEASVELSKSVVRTTRPQVVMLELDSTRLDDLPPGEAQKAEDG----LTWFMPEKKPDNAVAQGVTLEGGGDDVE--------SSRGERWKG-PFAFMSS--SRAKSFVG-AMKAIIDVFEEEEVS---EMEFAVLEAQACGARVLLGDRDFEETKRRLVAAGLADTVGDERLDDPEALLNDSMSLSNRKKFAGLDLRKPETR------------ETAGEHYAAMKRLSNQRAL-----EAMVPERDEVMASNLMTLKGKPITVALVGLFHVDGIERILKRNGWN 1230
AS E TPS++ +S + VS RNP ++++G H AS +++ +VR T+P V +ELD+ R+ P + + ++ E P+ A V+ V SSR K PF + A VG ++K + E E S E AV E G+ ++LGD+D E T RRL A L+ T D + L DS N K+ + ET ET +SN +++ AMV ERDE MA+ L L VA+VG+ HVDGIER L GW+
Sbjct: 95 FASFAETETLVTTPSKSSSPVSSPLCDPSVSTFRNPSNNRVVYILGTAHISSASADVAGQLVRDTKPSAVFVELDAKRVGRAIPKPSVSGKTSGDISISDTAGEAAPETATPVLVSAPISSPVVNVVEVEVPPSSRPPPTKSNPFNLKEKLLNNASKLVGNSIKGLYSKLESEGFSAGEEFVVAVREGLKIGSTIVLGDQDVEVTLRRLTEA-LSKT------DLKKLLAADSEMEQNMKQLMPDSGKAIETTGEMSSEQLTYFVETIKARENVKLLMSNLQSVAPEIYNAMVKERDEYMANGLDKLNQYDSIVAVVGIAHVDGIERFLMGRGWD 422
BLAST of mRNA_E-siliculosus-1a_F_contig108.560.1 vs. uniprot
Match: A0A2P6U1S8_CHLSO (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U1S8_CHLSO) HSP 1 Score: 78.6 bits (192), Expect = 3.900e-11 Identity = 80/289 (27.68%), Postives = 130/289 (44.98%), Query Frame = 1 Query: 352 REENHVSANTPSEAIPAFASNDGVSYLRNPDTGSEIWLVGVVHGQEASVELSKSVVRTTRPQVVMLELDSTRLDDLPPGEAQKAEDGLTWFMPEKKPDNAVAQGVTLEGGGDDVESSRGERWKGPFAFMSSSRAKSFVGAMKAIIDVFEEEEVSEMEFAVLEAQACGARVLLGDRDFEETKRRLVA----AGLADTVGDERLDDPEALLNDSMSLSNRKKFAGLDLRKPETRETAGEHYAAMKRLSNQRALEAMVPERDEVMASNLMTLKGKPITVALVGLFHVDGIER 1206
R+ + +A++ + A SN ++LRN G+EI+LVG H + S + + ++R +P VM+EL + R L G +A D L + + + GGG S + + M ++ + E E + A+ EA ACGARV+ GDRD + T +RL L L +P A L ++ S + G + + R + M R N +A++ ERD++M +L+ L+G+ V +VGL H+DGIER
Sbjct: 842 RQFSSTAADSGGSSSTAVLSNTS-TFLRNLSNGAEIFLVGTAHVSKQSAQEVRDMIRLVKPSSVMVELCAQRAARLRAGPEHEA-DYLQQMLKQ-----------IMFGGGT----------------FSQKMVQVSLPMMYKMMKMMGMEPGGEFKVALEEADACGARVVYGDRDVQATLQRLSQNMDLQQLLQIATGRGLPEPPASLVEAFRSSGGEGLKG-QVEGMKNRRLVRDMCEYM-RTVNPGLAKALIDERDDIMTRSLLRLEGR--VVGVVGLAHLDGIER 1097 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig108.560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig108.560.1 >prot_E-siliculosus-1a_F_contig108.560.1 ID=prot_E-siliculosus-1a_F_contig108.560.1|Name=mRNA_E-siliculosus-1a_F_contig108.560.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=397bp MWLRAGPVLLGFCSMPTGSFVLPPTPILARVYHRATADFRVPVNGGEHGGback to top mRNA from alignment at E-siliculosus-1a_F_contig108:58575..65151+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig108.560.1 ID=mRNA_E-siliculosus-1a_F_contig108.560.1|Name=mRNA_E-siliculosus-1a_F_contig108.560.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6577bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig108:58575..65151+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig108:58575..65151+ >mRNA_E-siliculosus-1a_F_contig108.560.1 ID=mRNA_E-siliculosus-1a_F_contig108.560.1|Name=mRNA_E-siliculosus-1a_F_contig108.560.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2382bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig108:58575..65151+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |