mRNA_E-siliculosus-1a_F_contig108.559.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig108.559.1 vs. uniprot
Match: A0A6H5KTH2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTH2_9PHAE) HSP 1 Score: 413 bits (1062), Expect = 1.990e-137 Identity = 212/226 (93.81%), Postives = 217/226 (96.02%), Query Frame = 1 Query: 406 MVEIDPCRIKMLPPGEATKDGDGLWWWNAVREAGPATAVTSGDLDKDEAQAANTSRTPGDGLETATNAVAGTRRRAKNGMNTYGMEMSEFYAAARQAVACGARVLLGDRDFQETKRRVSDADRADQEEAMSALGDSSAGKKITVEARIKRRVLEGTSPALWRKLRDLEKTWKPRKFAVLVTERDEVMASNLLKLEEGHGTVAVVGAHHTIGIGGILKANGWKTRRR 1083
MVEIDPCRIKMLPPGEATKDGDGLWWW+AV+EAGPATAV+SGD DKDE QAANTSRTPGDGLETATNAVA TRRRAKN MNT GMEMSEFYAAARQAVACGARVLLGDRDFQET RRVSDADRADQEEAMS+LGDSSAGKK TVE RIKRRVLEGTSPALWRKLRDLEKTWKPRKFAVLVTERDEVMASNLLK+EEG GTVAVVGAHHTIGIGGILKANGWKTRRR
Sbjct: 1 MVEIDPCRIKMLPPGEATKDGDGLWWWDAVQEAGPATAVSSGDRDKDEVQAANTSRTPGDGLETATNAVARTRRRAKNDMNTDGMEMSEFYAAARQAVACGARVLLGDRDFQETTRRVSDADRADQEEAMSSLGDSSAGKKNTVEPRIKRRVLEGTSPALWRKLRDLEKTWKPRKFAVLVTERDEVMASNLLKVEEGQGTVAVVGAHHTIGIGGILKANGWKTRRR 226
BLAST of mRNA_E-siliculosus-1a_F_contig108.559.1 vs. uniprot
Match: D7FHB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB7_ECTSI) HSP 1 Score: 142 bits (358), Expect = 6.450e-34 Identity = 109/298 (36.58%), Postives = 150/298 (50.34%), Query Frame = 1 Query: 232 SRRVGSERPPEFQSDDDVFYFHDPNTSSKIWLVGTTHNTKASSKLVKKVVRRVKPKVVMVEIDPCRIKMLPPGEATKDGDGLWWWNAVREAGPATA---VTSGDLDKDEAQAANTSRTPGDGLETATNAVAGTRRRAKNGMNTYGM--------EMSEFYAAARQAVACGARVLLGDRDFQETKRRVSDA--------DRADQEEAMSALGDSSAGKKITVEARIKRRVLEGTSPALWRKLRDLEKTWKPRKFAVLVTERDEVMASNLLKLEEGHGTVAVVGAHHTIGIGGILKANGW 1068
S SE P F S+D V Y +P+T S+IWLVG H + S +L K VVR +P+VVM+E+D R+ LPPGEA K DGL W+ ++ A A G D E + + P + ++ RAK+ + E+SE A +A ACGARVLLGDRDF+ETKRR+ A +R D EA+ S + +K +++ T+ + ++ L R +V ERDEVMASNL+ ++ TVA+VG H GI ILK NGW
Sbjct: 17 SANARSEAVPAFTSNDGVSYLRNPDTGSEIWLVGVVHGQETSVELSKSVVRTTRPQVVMLELDSKRLDDLPPGEAQKAEDGLTWFMPEKQPDDAVAQYVTLEGGGDDVELSRGDRWKGPFSFMSSS---------RAKSFVGAIKAMVDVFEEEEVSEMEVAVLEAQACGARVLLGDRDFEETKRRLVAAGLADTVGDERLDDPEALLNDSMSVSNRKKFAGLDLRKPETRETAGEHYAAMKRLS---NQRALEAMVPERDEVMASNLMTIKGKPITVALVGLFHVDGIERILKRNGW 302
BLAST of mRNA_E-siliculosus-1a_F_contig108.559.1 vs. uniprot
Match: A0A6H5KLL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL9_9PHAE) HSP 1 Score: 143 bits (361), Expect = 2.000e-33 Identity = 111/294 (37.76%), Postives = 150/294 (51.02%), Query Frame = 1 Query: 223 HATSRRVGSERPPEFQSDDDVFYFHDPNTSSKIWLVGTTHNTKASSKLVKKVVRRVKPKVVMVEIDPCRIKMLPPGEATKDGDGLWWWNAVREAGPATAVTSGDLDK---DEAQAANTSRTPGDGLETATNAVAGTRRRAKNGMNTYGME-MSEFYAAARQAVACGARVLLGDRDFQETKRRVSDA--------DRADQEEAMSALGDSSAGKKITVEARIKRRVLEGTSPALWRKLRDLEKTWKPRKFAVLVTERDEVMASNLLKLEEGHGTVAVVGAHHTIGIGGILKANGW 1068
H SE P F S+D V Y +P+T S+IWLVG H + S +L K VVR +P+VVM+E+D R+ LPPGEA K DGL W+ ++ P AV G + D+ + G +++ V K ++ + E +SE A +A ACGARVLLGDRDF+ETKRR+ A +R D EA+ L DS + A + R + T A +++ R +V ERDEVMA NL+ L+ TVA+VG H GI ILK NGW
Sbjct: 110 HHVPANTPSEAIPAFASNDGVSYLRNPDTGSEIWLVGVVHGQETSVELSKSVVRTTRPQVVMLELDSSRLDDLPPGEAQKAEDGLTWFMPQKQ--PDNAVAQGVTSRGGGDDVDLPRGEKWKGPFAFMSSSRVKSFVGAMKAIIDVFEEEEVSEMEVAVLEAQACGARVLLGDRDFEETKRRLVAAGLADTVGDERLDDPEAL--LNDSMSVSNRKTFAGLDLRKPD-TREAAGEHYAAMKRLSNQRALEAMVPERDEVMARNLMTLKGKPITVALVGLFHVDGIERILKRNGW 398
BLAST of mRNA_E-siliculosus-1a_F_contig108.559.1 vs. uniprot
Match: A0A6H5K4M4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4M4_9PHAE) HSP 1 Score: 128 bits (321), Expect = 3.280e-28 Identity = 110/307 (35.83%), Postives = 156/307 (50.81%), Query Frame = 1 Query: 208 ACTAQHATSRRVGSERPPEFQSDDDVFYFHDPNTSSKIWLVGTTHNTKASSKLVKKVVRRVKPKVVMVEIDPCRI----KMLPPGEAT-KDGDGLWWWNAVREAGPATAVTSGDLDKDEAQAANTSRTPGDGLETATNAVAGTRRRAK--NGMNTYGMEMS-EFYAAARQAVACGARVLLGDRDFQETKRRVSDADRADQEEAMSALGDSSAGKKITVEARIKRRVLEGTSPAL--------WRKLRDLEKTWKPRKFAVLVTERDEVMASNLLKLEEGHGTVAVVGAHHTIGIGGILKANGWKTRR 1080
A A A RR G++R P F DD V Y ++P S++WLVGT H + +S+ LV+ V+R++KP+VVMVE+D R+ K GE T DG G +E P T + + P + T A A + +K M+ G+ EF A +A ACGA++LLGDRD + T RR+S+A R + +S G G + +EA + +E + +L RK+ K P + ++ ERD+VMA NL+ L+ TVAVVG H GI GIL ANGWK +R
Sbjct: 100 AAAAGTAVGRRPGAKRSPTFLCDDAVSYLYNPTKQSEVWLVGTAHISNSSATLVENVIRQIKPQVVMVELDAQRVGSFMKPSKQGEKTLADGTG-------KEIAPPAERTRNPFFGAFFKQLLDPKVPVNDRITDFFAAALGKAISKMYESMDQKGLSSGQEFTIAINEARACGAKLLLGDRDVRITLRRLSEALRKIDLQKISQSGQMETG--LGLEA-LDGSSVESINSSLDILKNRETMRKVIGFYKEEAPELYNAMIGERDKVMAVNLMGLDGKQVTVAVVGLAHVDGIEGILMANGWKCQR 396
BLAST of mRNA_E-siliculosus-1a_F_contig108.559.1 vs. uniprot
Match: D7FHB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHB5_ECTSI) HSP 1 Score: 122 bits (305), Expect = 1.130e-26 Identity = 98/282 (34.75%), Postives = 127/282 (45.04%), Query Frame = 1 Query: 250 ERPPEFQSDDDVFYFHDPNTSSKIWLVGTTHNTKASSKLVKKVVRRVKPKVVMVEIDPCRIKMLPPGEATKDGDGLWWWNAVREAGPATAVTSGDLDKD---EAQAANTSRTPGDGLETATNAVAGTRRRAKNGMNTYGMEMSEFYAAARQAVACGARVLLGDRDFQETKRRVSDADRADQEEAMSALGDSSAGKKITVEARIKRRVLEGTSPALWRKLRDLEKTWKPRK-FAVLVTERD-EVMASNLLKLEEGHGTVAVVGAHHTIGIGGILKANGWKTRR 1080
E PE S+D V Y+ P S IWLVG H K+ +LV++ + ++P+VVMVE+D RI +LPPGEA + +GLWWW E S D+D+D + A D E+ + M E A R+A ACGARVLLGDRD++ T R + A RAD A K RK F L T D EVMA NL+KL TVAV+G H G+ +LK +GW+ RR
Sbjct: 111 ETLPECISNDAVSYWVHPAKESHIWLVGVVHGAKSGVQLVEEAIGGIRPEVVMVELDADRICVLPPGEAMETRNGLWWWAPEEEP-----EGSADVDEDGXXXXEYAEDDXXXXDEEESVS-------------------PMIEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADMASA------------------------------------------KERKEFNDLTTSFDCEVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGWQRRR 326
BLAST of mRNA_E-siliculosus-1a_F_contig108.559.1 vs. uniprot
Match: A0A6H5LN04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN04_9PHAE) HSP 1 Score: 101 bits (251), Expect = 1.240e-19 Identity = 65/181 (35.91%), Postives = 94/181 (51.93%), Query Frame = 1 Query: 247 SERPPEFQSDDDVFYFHDPNTSSKIWLVGTTHNTKASSKLVKKVVRRVKPKVVMVEIDPCRIKMLPPGEATKDGDGLWWWNAVREAGPATAVTSGDLDKDEAQAANTSRTPGDGLETATNAVAGTRRRAKNGMNTYGME---MSEFYAAARQAVACGARVLLGDRDFQETKRRVSDADRAD 780
+++ PE D V + +P+T S+IWL+G H + +LV+ V+R +KP+VVM+E+D R +LPPG + D LWWW + G R PG + A R+ +N N Y E +SE + A R+A AC ARVLLGDR + +KRR +A+RAD
Sbjct: 85 NDQLPECLQSDAVSHIRNPSTGSEIWLLGIIHQAEPYVQLVQSVIREIKPQVVMLELDAERTFLLPPGTPYQGEDKLWWWKPAKAKG---------------------RRPG---AVSNRKKAKPRKTTRNQRNFYQDEHVGVSEIWTAGREAQACRARVLLGDRSNEVSKRREREAERAD 241
BLAST of mRNA_E-siliculosus-1a_F_contig108.559.1 vs. uniprot
Match: A0A812NKF8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812NKF8_9DINO) HSP 1 Score: 72.0 bits (175), Expect = 8.340e-10 Identity = 78/278 (28.06%), Postives = 116/278 (41.73%), Query Frame = 1 Query: 295 HDPNTSSKIWLVGTTHNTKASSKLVKKVVRRVKPKVVMVEIDPCRIKMLPPGEATKDGDGLWWWNAVREAGPATAVTSGDLDKDEAQAANTSRTPGDGLETATNAVAGTRRRAKNGMNTYGMEM--------------SEFYAAARQAVACGARVLLGDRDFQETKRRV------SDADRADQEEAMSA--LGDSSAGKKITVEARIKRRVLEGTSPALWRKLRDLEKTWKPRKFAVLVTERDEVMASNLLKLEEG--HGTVAVVGAHHTIGIGGILK 1056
H TS ++++G TH + S+++V+ VV++ P +VMVE+D R+ L A + A P P D +A A G+ +G++M +E AA +A GA V+LGDR Q+T R+ SD + +Q+ A+S L S G + V++ T A ++LR K P FA LV ERDE MA+NL + VAVVG+ H GI L+
Sbjct: 81 HLQGTSGDVFVLGVTHLSNKSAQVVRSVVQKASPDMVMVELDASRVAGLARNST----------RAAKAAAPEA--------------------PSDFFTSARKATTDAALGMAAGVLRFGLDMIYRAFEKYLNTPAGTEMLAAVEEAAKVGAPVMLGDRPAQDTLNRLVEAGQSSDLGQLEQDLAISVPELRTSDLGLQALVDS--------ATDQATAKRLRRAFKASAPELFAALVGERDEYMAANLARAARNGRRRIVAVVGSLHVQGISEALE 320
BLAST of mRNA_E-siliculosus-1a_F_contig108.559.1 vs. uniprot
Match: A0A812G1S0_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812G1S0_9DINO) HSP 1 Score: 69.3 bits (168), Expect = 5.830e-9 Identity = 79/278 (28.42%), Postives = 120/278 (43.17%), Query Frame = 1 Query: 295 HDPNTSSKIWLVGTTHNTKASSKLVKKVVRRVKPKVVMVEIDPCRIKMLPPGEATKDGDGLWWWNAVREAGPATAVTSGDLDKDEAQAANTSRTPGDGLETATNAVAGTRRRAKNGMNTYGMEM--------------SEFYAAARQAVACGARVLLGDRDFQETKRRVSDA----DRADQEEAMSA----LGDSSAGKKITVEARIKRRVLEGTSPALWRKLRDLEKTWKPRKFAVLVTERDEVMASNLLKLEEG--HGTVAVVGAHHTIGIGGILK 1056
H T+ ++++G TH + S+++V+ VV+R P +VMVE+D R+ + N+ R + TA + P D TA A A + G+ +G+++ SE AA +A G V+LGDR Q+T R+ +A D A EE ++ L S G + V++ T A ++LR K P FA LV ERDE MA+NL + + VAVVG+ H GI L+
Sbjct: 69 HLQGTTGDVFVLGVTHLSNKSAEVVRSVVQRATPDLVMVELDASRVGLAK--------------NSTRSS-KTTAPPPAEA-------------PSDFFSTARKASADAALQLAAGVLRFGLDLIYRAFEKYLNTPAGSEMLAAIEEAGKIGTPVMLGDRPAQDTLNRLVEAGQSSDLAQLEEDLAISVPELRTSGLGLQALVDS--------ATDQATAKRLRRAFKGSAPELFAALVGERDEYMAANLARAAQKGKRRIVAVVGSLHVQGISEALE 310 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig108.559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig108.559.1 >prot_E-siliculosus-1a_F_contig108.559.1 ID=prot_E-siliculosus-1a_F_contig108.559.1|Name=mRNA_E-siliculosus-1a_F_contig108.559.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=345bp MRHRHRVLCLYSALTFLPSSSFVPPRGARLLPSSASAPIFQDEPSCRVAIback to top mRNA from alignment at E-siliculosus-1a_F_contig108:50909..58447- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig108.559.1 ID=mRNA_E-siliculosus-1a_F_contig108.559.1|Name=mRNA_E-siliculosus-1a_F_contig108.559.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7539bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig108:50909..58447- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig108:50909..58447- >mRNA_E-siliculosus-1a_F_contig108.559.1 ID=mRNA_E-siliculosus-1a_F_contig108.559.1|Name=mRNA_E-siliculosus-1a_F_contig108.559.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2070bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig108:50909..58447- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |