mRNA_E-siliculosus-1a_F_contig108.558.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot
Match: D7FHB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHB5_ECTSI) HSP 1 Score: 512 bits (1319), Expect = 7.720e-180 Identity = 287/359 (79.94%), Postives = 292/359 (81.34%), Query Frame = 2 Query: 47 MMGIRSLSLVLPLACSPAGSFVLPATRLRPVAPLRQDCDVYYSRGAARSGTDAAVKGRERFMSMELGFDPLKRRCSCQPVGAHRSRSLPLRSQQAQASAEETTVSADPTQETLPECISNDAVSYWVHPAKESHIWLVGVVHGAKSGVQQLVEEAIGGIRPEVVMVELDADRICVLPPGEAMETRNGLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESVSPVIEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADMASAKERKEFNDLTTSFDCEESTRAITRKECAQMKERAPKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGWQRRRA 1123 MMGIRSLSLVLPLACSPA SFVLPATRLR VAPLR DCDV YSRGAARSGTDAAVKGRERFMSMELG +P+K RCSCQPVGAHRSRSLPLRS+Q QASAEET +SADPTQETLPECISNDAVSYWVHPAKESHIWLVGVVHGAKSGVQ LVEEAIGGIRPEVVMVELDADRICVLPPGEAMETRNGLW XXXX XXXX ESVSP+IEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADMASAKERKEFNDLTTSFDCE VMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGWQRRRA Sbjct: 1 MMGIRSLSLVLPLACSPAESFVLPATRLRSVAPLRLDCDVQYSRGAARSGTDAAVKGRERFMSMELGLNPVKHRCSCQPVGAHRSRSLPLRSKQVQASAEETNLSADPTQETLPECISNDAVSYWVHPAKESHIWLVGVVHGAKSGVQ-LVEEAIGGIRPEVVMVELDADRICVLPPGEAMETRNGLWWWAPEEEPEGSADVDEDGXXXXEYAEDDXXXXDEEESVSPMIEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADMASAKERKEFNDLTTSFDCE-------------------------------VMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGWQRRRA 327
BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot
Match: A0A6H5K4M4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4M4_9PHAE) HSP 1 Score: 139 bits (349), Expect = 1.730e-33 Identity = 128/404 (31.68%), Postives = 182/404 (45.05%), Query Frame = 2 Query: 50 MGIRSLSLVLPLACSPAGSFVLPATRLRPVAPLRQDCDVYYSRGAARS---GTDAAVKGRERF--MSMELGFDPLKRRCSCQPVG---AHRSRSLPLRSQQAQASAEETTVSADPTQETLPECISNDAVSYWVHPAKESHIWLVGVVHGAKSGVQQLVEEAIGGIRPEVVMVELDADRIC--------------------VLPPGEAMETRN----GLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESVSPVIEIQTAVREAGACGARVLLGDRDYETTGRLLEKA-KRADMAS--------------AKERKEFNDLTTSFDCEESTRAITRKECAQMKERAPKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGWQRRR 1120 M +R+LSL LP A A SFV+P P L + G+ R+ GT A G + + MEL L RR + +G A + + L + QA+A T V P + P + +DAVSY +P K+S +WLVG H + S LVE I I+P+VVMVELDA R+ + PP E TRN + + +S E A+ EA ACGA++LLGDRD T R L +A ++ D+ A + + +S D ++ R RK KE AP+++ M +RD+VMA NLM L G+Q TVAV+G+AH+DG+E +L +GW+ +R Sbjct: 1 MVLRTLSLALPFASLLAESFVVPP----PSLSLSSASGSTWHVGSVRNPEEGTTTAATGNPKHPGLLMELENTQLDRRALLRTIGGALASLASASALTASPQQAAAAGTAVGRRPGAKRSPTFLCDDAVSYLYNPTKQSEVWLVGTAHISNSSAT-LVENVIRQIKPQVVMVELDAQRVGSFMKPSKQGEKTLADGTGKEIAPPAE--RTRNPFFGAFFKQLLDPKVPVNDRITDFFAAALGKAISKMYESMDQKGLSSGQEFTIAINEARACGAKLLLGDRDVRITLRRLSEALRKIDLQKISQSGQMETGLGLEALDGSSVESINSSLDILKN-RETMRKVIGFYKEEAPELYNAMIGERDKVMAVNLMGLDGKQVTVAVVGLAHVDGIEGILMANGWKCQR 396
BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot
Match: D7FHB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB7_ECTSI) HSP 1 Score: 129 bits (325), Expect = 7.470e-31 Identity = 102/298 (34.23%), Postives = 138/298 (46.31%), Query Frame = 2 Query: 335 ASAEETTVSADPTQETLPECISNDAVSYWVHPAKESHIWLVGVVHGAKSGVQQLVEEAIGGIRPEVVMVELDADRICVLPPGEAMETRNGL-WXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESV----------------------SPVIEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADMA----------------SAKERKEFNDLTTSFDCEESTRAITRKECAQMKERA-PKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGW 1108 AS E SA+ E +P SND VSY +P S IWLVGVVHG ++ V+ L + + RP+VVM+ELD+ R+ LPPGEA + +GL W S V E++ AV EA ACGARVLLGDRD+E T R L A AD S RK+F L + TR + A MK + + + M +RD+VMA NLM ++G+ TVA++G+ H+DG+E++LK +GW Sbjct: 9 ASHEGAQFSANARSEAVPAFTSNDGVSYLRNPDTGSEIWLVGVVHGQETSVE-LSKSVVRTTRPQVVMLELDSKRLDDLPPGEAQKAEDGLTWFMPEKQPDDAVAQYVTLEGGGDDVELSRGDRWKGPFSFMSSSRAKSFVGAIKAMVDVFEEEEVSEMEVAVLEAQACGARVLLGDRDFEETKRRLVAAGLADTVGDERLDDPEALLNDSMSVSNRKKFAGLDLR---KPETRETAGEHYAAMKRLSNQRALEAMVPERDEVMASNLMTIKGKPITVALVGLFHVDGIERILKRNGW 302
BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot
Match: A0A6H5KLL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL9_9PHAE) HSP 1 Score: 130 bits (327), Expect = 2.420e-30 Identity = 129/415 (31.08%), Postives = 179/415 (43.13%), Query Frame = 2 Query: 50 MGIRSLSLVLPLACSPAGSFVLPATRLRPVAPLRQDCDVYYSRGAARSGTD---AAVKGRERFMSMELGFDPLKRRCS-------------CQPV-----GAHRSRS-LPLRSQQAQASAEETTVSADPTQETLPECISNDAVSYWVHPAKESHIWLVGVVHGAKSGVQQLVEEAIGGIRPEVVMVELDADRICVLPPGEAMETRNGL-WXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESV----------------------SPVIEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADMA----------------SAKERKEFNDLTTSFDCEESTRAITRKECAQMKERA-PKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGW 1108 M +R+ ++L P SFVLP T + +R A TD V G S G PL+RRCS C+ + GA SR+ + +R + + V A+ E +P SND VSY +P S IWLVGVVHG ++ V+ L + + RP+VVM+ELD+ R+ LPPGEA + +GL W + V E++ AV EA ACGARVLLGDRD+E T R L A AD S RK F L + TR + A MK + + + M +RD+VMA+NLM L+G+ TVA++G+ H+DG+E++LK +GW Sbjct: 1 MWLRAGPVLLGFCSMPTVSFVLPPTPIL----------ARVNRRGATCTTDFRVPVVNGGGHGGSAGPGAKPLQRRCSRIAPKSCRCCFNFCRGMSHAFGGAPTSRATIGMRLASREGNHH---VPANTPSEAIPAFASNDGVSYLRNPDTGSEIWLVGVVHGQETSVE-LSKSVVRTTRPQVVMLELDSSRLDDLPPGEAQKAEDGLTWFMPQKQPDNAVAQGVTSRGGGDDVDLPRGEKWKGPFAFMSSSRVKSFVGAMKAIIDVFEEEEVSEMEVAVLEAQACGARVLLGDRDFEETKRRLVAAGLADTVGDERLDDPEALLNDSMSVSNRKTFAGLDLR---KPDTREAAGEHYAAMKRLSNQRALEAMVPERDEVMARNLMTLKGKPITVALVGLFHVDGIERILKRNGW 398
BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot
Match: A0A6H5LN04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN04_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 1.490e-19 Identity = 62/160 (38.75%), Postives = 84/160 (52.50%), Query Frame = 2 Query: 368 PTQETLPECISNDAVSYWVHPAKESHIWLVGVVHGAKSGVQQLVEEAIGGIRPEVVMVELDADRICVLPPGEAMETRNGLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESVSPVIEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRAD 847 P + LPEC+ +DAVS+ +P+ S IWL+G++H A+ VQ LV+ I I+P+VVM+ELDA+R +LPPG + + LW + V EI TA REA AC ARVLLGDR E + R +A+RAD Sbjct: 83 PANDQLPECLQSDAVSHIRNPSTGSEIWLLGIIHQAEPYVQ-LVQSVIREIKPQVVMLELDAERTFLLPPGTPYQGEDKLWWWKPAKAKGRRPGAVSNRKKAKPRKTTRNQRNFYQDEHVGVSEIWTAGREAQACRARVLLGDRSNEVSKRREREAERAD 241
BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot
Match: A0A6H5KTH2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTH2_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 1.800e-16 Identity = 71/225 (31.56%), Postives = 99/225 (44.00%), Query Frame = 2 Query: 536 MVELDADRICVLPPGEAMETRNGLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ESVSPVI-------------------EIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADM---------ASAKERKEFNDLTTSFDCEESTRAITRKECAQMKERAPKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGWQRRR 1120 MVE+D RI +LPPGEA + +GLW E+ + + E A R+A ACGARVLLGDRD++ T R + A RAD +SA ++ E ++ A+ RK K P+ F V+ T+RD+VMA NL+K+ Q TVAV+G H G+ +LK +GW+ RR Sbjct: 1 MVEIDPCRIKMLPPGEATKDGDGLWWWDAVQEAGPATAVSSGDRDKDEVQAANTSRTPGDGLETATNAVARTRRRAKNDMNTDGMEMSEFYAAARQAVACGARVLLGDRDFQETTRRVSDADRADQEEAMSSLGDSSAGKKNTVEPRIKRRVLEGTSPALWRKLRDLEKTWKPRKFAVLVTERDEVMASNLLKVEEGQGTVAVVGAHHTIGIGGILKANGWKTRR 225
BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot
Match: D7G9B8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B8_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 2.460e-12 Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 2 Query: 368 PTQETLPECISNDAVSYWVHPAKESHIWLVGVVHGAKSGVQQLVEEAIGGIRPEVVMVELDADRICVLPPG 580 P E LPEC+ +DAVS+ +P S IWL+G++H A+ VQ LV+ I I+P+VVM+ELDA+R +LPPG Sbjct: 29 PANERLPECLQSDAVSHIRNPTTGSEIWLLGIIHQAEPYVQ-LVQSVIREIKPQVVMLELDAERAFLLPPG 98
BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot
Match: L1K338_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K338_GUITC) HSP 1 Score: 76.3 bits (186), Expect = 1.010e-11 Identity = 70/248 (28.23%), Postives = 115/248 (46.37%), Query Frame = 2 Query: 401 NDAVSYWVHPAKESHIWLVGVVHGAKSGVQQLVEEAIGGIRPEVVMVELDADR---ICVLPPGEAMETRNGLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESVSPVIEIQTAVREAGACGARVLLGDRDYETT-GRLLEKAKRAD----MASAKERKEFNDLTTSFDCEESTRAITRKECAQMKER-----APKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHG 1105 N V+Y HP + ++LVG VH +K + +V E I +RP+ VMVEL R I + G+ T + + ++ + E+ A+R A GA+V+LGDRD +TT RL E+ +D +++ + +T F ++S + ITR + +M +R + + + +RD++MA+ L + Q VAV+GMAH+DG+EK K G Sbjct: 87 NGHVAYLRHPRLQQEVYLVGSVHISKKSAE-IVNEVILAVRPQAVMVELCEARKRAIVSIDQGQQTSTLDTI-------------LRMAGISRQQASAMVGDKILEFIDAYTRGNEMLVAMRAAEQVGAKVILGDRDQQTTLRRLKEEFNLSDVLKLLSTPMSPSSQSIFSTPFAKQKSEKEITRDDARRMLQRLRDSCSSGMISALVDERDEIMAQTLARCNF-QRVVAVVGMAHMDGIEKRYKDEG 319
BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot
Match: A0A4Y7K1D1_PAPSO (Uncharacterized protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7K1D1_PAPSO) HSP 1 Score: 69.7 bits (169), Expect = 1.080e-9 Identity = 55/219 (25.11%), Postives = 91/219 (41.55%), Query Frame = 2 Query: 440 SHIWLVGVVHGAKSGVQQLVEEAIGGIRPEVVMVELDADRICVLPPGEAMETRNGLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESVSPVIEIQTAVREAGACGARVLLGDRDYETTGRLLEKAKRADMASAKERKEFNDLTTSFDCEESTRAITRKECAQMKERAPKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLK 1096 + I+L+G +HG+ + +V+ I ++P +V VEL R+ + + + W + P +E + A+ E+ GA D+D T L K D+ + + T F E+ TR+ R+ + K+R P + KVM RD M NL +G+ VAV+GMAH+DG+E + K Sbjct: 56 AQIYLIGTLHGSNQSAE-IVKTVIENVKPGIVAVELCEKRVGAM---NKQQPDDDTWYKLFRKSMRAPGGLSMKIYKFMLSCRRRRLNAY---GIIPALEFKVAMEESARVGASCFYIDQDINVTHEQLSKVPSFDLLWKAYHESRLSVHTEFADEKHTRSSVRESSGKQKKRCPDIAKVMIEDRDNFMFTNLRNFQGK--VVAVVGMAHMDGIELLWK 265
BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot
Match: A0A6V2GKS8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2GKS8_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.650e-9 Identity = 52/171 (30.41%), Postives = 86/171 (50.29%), Query Frame = 2 Query: 716 ESVSPVIEIQTAVREAGACGARVLLGDRDYETTGRLLEKA------KRADMASAKERKEFNDLTTSFDCEEST------RAITRKECAQ-----------------MKERAPKVFKVMCTQRDQVMAKNLMKLRGEQTTVAVIGMAHLDGVEKVLKGHGWQRRRA*ANQPQ 1141 E +P E AV+E A G++++LGDRD + T R L +A K+ + + K +L S ST A+ ++ A+ +++ AP++++ M +RD+ MAK L K+ +TVAV+G+AH+DGVE+ L G+GW +A P+ Sbjct: 287 EGFNPGEEFVVAVKEGLAVGSQIVLGDRDVDVTLRRLTEALSKTDLKKLTSSDSDLEKSMQELLPSSSSGSSTGKPVDPTAVDKESLARYVEVVKAKDNVRLIMKTLQDAAPELYQAMVAERDEYMAKGLNKIDMFPSTVAVMGIAHVDGVERYLGGNGWTNIKASGCMPK 457 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig108.558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig108.558.1 >prot_E-siliculosus-1a_F_contig108.558.1 ID=prot_E-siliculosus-1a_F_contig108.558.1|Name=mRNA_E-siliculosus-1a_F_contig108.558.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=360bp MMGIRSLSLVLPLACSPAGSFVLPATRLRPVAPLRQDCDVYYSRGAARSGback to top mRNA from alignment at E-siliculosus-1a_F_contig108:44250..50874+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig108.558.1 ID=mRNA_E-siliculosus-1a_F_contig108.558.1|Name=mRNA_E-siliculosus-1a_F_contig108.558.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6625bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig108:44250..50874+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig108:44250..50874+ >mRNA_E-siliculosus-1a_F_contig108.558.1 ID=mRNA_E-siliculosus-1a_F_contig108.558.1|Name=mRNA_E-siliculosus-1a_F_contig108.558.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2160bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig108:44250..50874+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |