mRNA_E-siliculosus-1a_F_contig1078.547.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1078.547.1 vs. uniprot
Match: A0A6H5KKK8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK8_9PHAE) HSP 1 Score: 845 bits (2182), Expect = 8.700e-286 Identity = 515/587 (87.73%), Postives = 519/587 (88.42%), Query Frame = 3 Query: 411 MAPNNFKTGAPAGGGAPPRSPSRWTSPAAPLPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEVICEVKDLYYAIELPPTAXXXXXXXAPVAPALPPGKRRQTGYSFRGGALLKIFRKDKGAVARASAPAATRVESAAPAVSSVLREKKKRVLTQGVNCRFCAGDMVAVI------------------------------GASGAGKSTFLDLLAGKKKEGECAGQILLTQSGGXXXGIGSRWRRGGKGRGRPSVYVTQDDFHVAELTVRESLAFAVRLSMGGRERDRRARVEELLDVLGLRACAEVRVGNPLERGISGGEARRLSMGIGVAALESVRLLLLDEPTTGLDSSSAAEVMLLARKLASRRDRRVVVASVHQPSAEMFSLFDKVLVMVGGRQAFFGSASKAADILSRPELGIMPTPGQNSAEFILLAAKAVLQSSQQQQEGRASGRGARSPEPSYASSSIHSSASTSPQGLIGVDPSSLLGVGD--IGGGXXGSTMGGDYLYEDAEKGLFNEPPGGKPAAYGGKGGYAEEEGAEEGKEEGTTTLELLQRRPWGIGGWFEESSHAVG 2075
MAPNNFKTGAPAGGGAPPRSPSRWTS A XXXXXXXXXXXXXXXXXXXXXXXXXXXX EGEVICEVKDLYYAIELPPTA APVAPALPPGKRRQTGYSFRGGALLKIFRKDKGAVARASAPAATRVESAAP VSSVLREKKKRVLTQGVNCRFCAGDMVAVI GASGAGKSTFLDLLAGKKKEGECAGQILLTQSGGXXXGIG RWRRGGKG+GRPSVYVTQDDFHVAELTVRESLAFAVRLSMGGRERDRRARVEELLDVLGLRACA+VRVGNPLERGISGGEARRLSMGIGVAALESVRLLLLDEPTTGLDSSSAAEVMLLARKLASRRDRRVVVASVHQPSAEMFSLFDKVLVMVGGRQAFFGSASKAADILSRPELGIMPTPGQNSAEFILLAAKAVLQSSQQ+ GRAS RGARSPEPSYASSSIHSSASTSPQGLIGVDPSSLLGVGD XX STMGGDYLYEDAEKGLFNEPPGGKPAAYGGKGGYAEEEGAEEGKEEGTTTLELLQR+PWGIGGWFEESSHAVG
Sbjct: 1 MAPNNFKTGAPAGGGAPPRSPSRWTSSA--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSYDRLAEQQQQEGEVICEVKDLYYAIELPPTATAAAPPPAPVAPALPPGKRRQTGYSFRGGALLKIFRKDKGAVARASAPAATRVESAAP-VSSVLREKKKRVLTQGVNCRFCAGDMVAVIVSLSHAWRSAVGGRLGRRQAACMKTAAQQAGASGAGKSTFLDLLAGKKKEGECAGQILLTQSGGXXXGIG-RWRRGGKGQGRPSVYVTQDDFHVAELTVRESLAFAVRLSMGGRERDRRARVEELLDVLGLRACADVRVGNPLERGISGGEARRLSMGIGVAALESVRLLLLDEPTTGLDSSSAAEVMLLARKLASRRDRRVVVASVHQPSAEMFSLFDKVLVMVGGRQAFFGSASKAADILSRPELGIMPTPGQNSAEFILLAAKAVLQSSQQE-GGRASRRGARSPEPSYASSSIHSSASTSPQGLIGVDPSSLLGVGDGXXXXXXXXSTMGGDYLYEDAEKGLFNEPPGGKPAAYGGKGGYAEEEGAEEGKEEGTTTLELLQRQPWGIGGWFEESSHAVG 582
BLAST of mRNA_E-siliculosus-1a_F_contig1078.547.1 vs. uniprot
Match: D8LSM2_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM2_ECTSI) HSP 1 Score: 344 bits (882), Expect = 4.370e-111 Identity = 199/225 (88.44%), Postives = 201/225 (89.33%), Query Frame = 3 Query: 948 MVAVIGASGAGKSTFLDLLAGKKKEGECAGQILLTQSGGXXXGIG----SRWRRGGKGRGRPSVYVTQDDFHVAELTVRESLAFAVRLSMGGRERDRRARVEELLDVLGLRACAEVRVGNPLERGISGGEARRLSMGIGVAALESVRLLLLDEPTTGLDSSSAAEVMLLARKLASRRDRRVVVASVHQPSAEMFSLFDKV-----LVMVGGRQAFFGS-ASKAAD 1592
MVAVIGASGAGKSTFLDLLAGKKKEGECAGQILLTQSGGXXX RWRRGGKGRGRPSVYVTQDDFHVAELTVRESLAFAVRLSMGGRERDRRARVEELLDVLGLRACAEVRVGNPLERGISGGEARRLSMGIGVAALESVRLLLLDEPTTGLDSSSAAEVMLLARKLASRRDRRVVVASVHQPSAEMFSLFDKV + GRQ G A + AD
Sbjct: 1 MVAVIGASGAGKSTFLDLLAGKKKEGECAGQILLTQSGGXXXXXXXXXIGRWRRGGKGRGRPSVYVTQDDFHVAELTVRESLAFAVRLSMGGRERDRRARVEELLDVLGLRACAEVRVGNPLERGISGGEARRLSMGIGVAALESVRLLLLDEPTTGLDSSSAAEVMLLARKLASRRDRRVVVASVHQPSAEMFSLFDKVDARGARITKRGRQRPIGKQAGRGAD 225
BLAST of mRNA_E-siliculosus-1a_F_contig1078.547.1 vs. uniprot
Match: D8LSM1_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM1_ECTSI) HSP 1 Score: 303 bits (776), Expect = 3.060e-85 Identity = 164/178 (92.13%), Postives = 164/178 (92.13%), Query Frame = 3 Query: 1542 MVGGRQAFFGSASKAADILSRPELGIMPTPGQNSAEFILLAAKAVLQSSQQQQEGRASGRGARSPEPSYASSSIHSSASTSPQGLIGVDPSSLLGVGDIGGGXXGSTMGGDYLYEDAEKGLFNEPPGGKPAAYGGKGGYAEEEGAEEGKEEGTTTLELLQRRPWGIGGWFEESSHAVG 2075
MVGGRQAFFGSASKAADILSRPELGIMPTPGQNSAEFILLAAKAVLQSSQQ QEGRAS RGARSPEPSYASSSIHSSASTSPQGLIGVDPSSLLGVGD XX DY YEDAEKGLFNEPPGGKPAAYGGKGGYAEEEGAE GKEEGTTTLELLQRRPWGIGGWFEESSHAVG
Sbjct: 1 MVGGRQAFFGSASKAADILSRPELGIMPTPGQNSAEFILLAAKAVLQSSQQHQEGRASRRGARSPEPSYASSSIHSSASTSPQGLIGVDPSSLLGVGDGXXXXXXXXXXXDYFYEDAEKGLFNEPPGGKPAAYGGKGGYAEEEGAEXGKEEGTTTLELLQRRPWGIGGWFEESSHAVG 178
BLAST of mRNA_E-siliculosus-1a_F_contig1078.547.1 vs. uniprot
Match: W7TLH8_9STRA (Abc transporter g family member 29 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLH8_9STRA) HSP 1 Score: 170 bits (430), Expect = 2.800e-40 Identity = 105/264 (39.77%), Postives = 156/264 (59.09%), Query Frame = 3 Query: 900 KRVLTQGVNCRFCAGDMVAVIGASGAGKSTFLDLLAGKKKEGECAGQILLTQSGGXXXGIGSRWRRGGKGRGRPSV--YVTQDDFHVAELTVRESLAFA--VRLSMGGRERDRRARVEELLDVLGLRACAEVRVGNPLERGISGGEARRLSMGIGVAALESVRLLLLDEPTTGLDSSSAAEVMLLARKLASRRDRRVVVASVHQPSAEMFSLFDKVLVMVGGRQAFFGSASKAADILSRPELGIMPTPGQNSAEFILLAAKAVL 1679
K+ L + + R G+M A++G SGAGK+T LD+LAG+K G G++ G G P + YVTQD+ H+ TVRE+L FA +R+ G R R V+++L +LGL + A+V VG+ L +GISGG+ARRL++G+ + L ++ LDEPTTGLDS+ + EVM R LA++ R V ++HQPS E+F+LFDK+++M G Q +FG+ +A S P L + G N AEF++ A+ +
Sbjct: 674 KKYLLRKASGRVNPGEMCALMGGSGAGKTTLLDVLAGRKTAGLIEGEVFFN---------------GKAGMPSPKLCSYVTQDNVHIGCFTVRETLHFAALLRIKEGVRPAQREKMVDDVLGMLGLDSVADVMVGDSLRKGISGGQARRLTIGVEIINLPG--MIFLDEPTTGLDSNISYEVMAAVRNLANQN--RTVCCTIHQPSIEVFALFDKLILMAKGEQVYFGATHEAVKYFSSPALDFAFSKGVNPAEFVMSASSGSI 918
BLAST of mRNA_E-siliculosus-1a_F_contig1078.547.1 vs. uniprot
Match: W7TH06_9STRA (Atp-binding cassette superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH06_9STRA) HSP 1 Score: 167 bits (422), Expect = 2.300e-39 Identity = 112/265 (42.26%), Postives = 155/265 (58.49%), Query Frame = 3 Query: 891 EKKKRVLTQGVNCRFCAGDMVAVIGASGAGKSTFLDLLAGKKKEGECAGQILLTQSGGXXXGIGSRWRRGGKGRGRPSVYVTQDDFHVAELTVRESLAFA--VRLSMGGRERDRRARVEELLDVLGLRACAEVRVGNPLERGISGGEARRLSMGIGVAALESVRLLLLDEPTTGLDSSSAAEVMLLARKLASRRDRRVVVASVHQPSAEMFSLFDKVLVMVGGRQAFFGSASKAADILSRPELGIMPTPGQNSAEFILLAAKAVL 1679
++ R+L +GV+ G M A++G SGAGKST LDLLA +K G G+ + GG S+W YVTQD+ H++ TVRE+L FA +RL G RR R E+++ +LGL A+V VGN L +GISGG+ARRLS+G+ + L V L LDEPTTGLDS + EVM R +A+ R VV ++H PS ++ LFD +L++ GRQ +FGSA A S LG G+N A+F++ A + +L
Sbjct: 659 DRAARIL-KGVSGHVFPGQMCALMGGSGAGKSTLLDLLAHRKTGGFITGEYYI---GGQAEKPSSKW----------CSYVTQDNVHISLFTVRETLEFAALLRLKEGIPVEKRRERAEDVMKMLGLEDVADVPVGNALVKGISGGQARRLSIGVEIMHLPDV--LFLDEPTTGLDSQISHEVMSSVRNIANHN--RTVVCTIHSPSKAVYELFDSLLLLALGRQTYFGSAEAAPTYFSLLTLGWCMPIGKNPADFLMEANQGLL 905
BLAST of mRNA_E-siliculosus-1a_F_contig1078.547.1 vs. uniprot
Match: A0A8J4FZ89_9CHLO (ABC transporter domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FZ89_9CHLO) HSP 1 Score: 154 bits (388), Expect = 5.530e-37 Identity = 113/261 (43.30%), Postives = 154/261 (59.00%), Query Frame = 3 Query: 909 LTQGVNCRFCAGDMVAVIGASGAGKSTFLDLLAGKKKEGECAGQILLTQSGGXXXGIGSRWRRGGKGRGRPSVYVTQDDFHVAELTVRESLAFAVRLSMGGRE--RDRRARVEELLDVLGLRACAEVRVGNPLERGISGGEARRLSMGIGVAALESVRLLLLDEPTTGLDSSSAAEVMLLARKLASRRDRRVVVASVHQPSAEMFSLFDKVLVMVGGRQAFFGSASKAAD---------ILSRPELGIMPTPGQNSAEFIL 1658
L V+ F G M A++G SG+GK+T LDLLAG+K G G++L + G + R R G YV Q D + LTVRE L + L E +++A VE+LL L L +CA VR+G+P RGISGG+A+R + IG++ + R++ LDEPTTGLDS +A EVML +KLA R VVA+VH P+A FSLFD++L++VGGR +FG + A + S PE G+M PG NSAEF++
Sbjct: 61 LVNQVSAWFEPGLMSALMGPSGSGKTTLLDLLAGRKTIGRVEGELLFS---GIKPSLEYRRRYCG--------YVEQFDTLLPILTVREMLLYTAELKRPLSEPLENKKAEVEKLLTQLCLNSCANVRIGSPAARGISGGQAKRTN--IGISLVTDPRVIFLDEPTTGLDSYTANEVMLTVQKLA--RAGVTVVATVHSPTAFCFSLFDRLLMLVGGRTVYFGPQDQRAIDYFQSCKPFLESDPE-GLMG-PGHNSAEFLV 304
BLAST of mRNA_E-siliculosus-1a_F_contig1078.547.1 vs. uniprot
Match: A0A1S8W532_9FUNG (ABC transporter domain-containing protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W532_9FUNG) HSP 1 Score: 159 bits (402), Expect = 6.830e-37 Identity = 104/241 (43.15%), Postives = 145/241 (60.17%), Query Frame = 3 Query: 942 GDMVAVIGASGAGKSTFLDLLAGKKKEGECAGQILLTQSGGXXXGIGSRWRRGGKGRGRPSVYVTQDDFHVAELTVRESLAF--AVRLSMGGRERDRRARVEELLDVLGLRACAEVRVGNPLERGISGGEARRLSMGIGVAALESVRLLLLDEPTTGLDSSSAAEVMLLARKLASRRDRRVVVASVHQPSAEMFSLFDKVLVMVGGRQAFFGSASKAADILSRPELGIMPTPGQNSAEFIL 1658
G M+A+IG SGAGKSTFLD+LAGK K G G I + + R R S +V Q+D ++ +TVRE+L F A+RL RDR+ R+EE++D LGL R+G+ L RGISGGE RRLS IGV + + ++ LDEPT+GLDS +A +VM L S + +R V+ S+HQP +++F+LFD++L++ G FFG AAD L+ GI PG N A+ ++
Sbjct: 385 GSMLAIIGPSGAGKSTFLDILAGKAKTGTVKGTITVGND------LSRSTLR------RLSGFVDQEDVFISTMTVREALEFSAALRLPESLSARDRKHRIEEVMDELGLTHIQNTRIGDSLSRGISGGEKRRLS--IGVELVTNPAVIYLDEPTSGLDSYNAVQVMETLATL-SHKWKRTVIFSIHQPRSDVFALFDQILLLSKGTTVFFGRTDSAADYLAG--YGIPCPPGYNLADHLI 608
BLAST of mRNA_E-siliculosus-1a_F_contig1078.547.1 vs. uniprot
Match: A0A0J0XT02_9TREE (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Cutaneotrichosporon oleaginosum TaxID=879819 RepID=A0A0J0XT02_9TREE) HSP 1 Score: 155 bits (393), Expect = 1.440e-36 Identity = 97/251 (38.65%), Postives = 155/251 (61.75%), Query Frame = 3 Query: 909 LTQGVNCRFCAGDMVAVIGASGAGKSTFLDLLAGKKKEGECAGQILLTQSGGXXXGIGSRWRRGGKGRGRPSVYVTQDDFHVAELTVRESLAFAVRLSMGGRER-DRRARVEELLDVLGLRACAEVRVGNPLERGISGGEARRLSMGIGVAALESVRLLLLDEPTTGLDSSSAAEVMLLARKLASRRDRRVVVASVHQPSAEMFSLFDKVLVMVGGRQAFFGSASKAADILSRPELGIMPTPGQNSAEFIL 1658
L V+ + G M+A++G SGAGKST LD+++ +KK E G I L + + S +V QDD H LTVRE++ FA RL+ G+ R + R RV++++ LGL++CA +++G P++RGISGG+ RR+++G G+ R+L LDEPT+GLDS+SA EV+ R++A + + +V+A++H PS + LFD+++V+ GR AF G+ ++AA + ++G P QN A+ +L
Sbjct: 23 LVDNVSVKVAQGQMLAILGPSGAGKSTLLDIMSFRKKAME-GGSIRLNGTPLTATTMSE-----------VSSFVEQDDQHYGVLTVRETIGFASRLTNTGQTRAETRQRVDDIVHALGLQSCANLKIGTPIQRGISGGQKRRVTVGTGLVTYP--RILFLDEPTSGLDSASAREVVASIRRIA-QAEGIIVIATIHSPSVDTLQLFDQMMVLAKGRTAFRGTMAEAAARCT--DIGYPMPPFQNPADHLL 256
BLAST of mRNA_E-siliculosus-1a_F_contig1078.547.1 vs. uniprot
Match: J5QPF8_TRIAS (ABC transporter domain-containing protein n=2 Tax=Trichosporon asahii var. asahii TaxID=189963 RepID=J5QPF8_TRIAS) HSP 1 Score: 154 bits (390), Expect = 4.400e-36 Identity = 91/229 (39.74%), Postives = 141/229 (61.57%), Query Frame = 3 Query: 909 LTQGVNCRFCAGDMVAVIGASGAGKSTFLDLLAGKKKEGECAGQILLTQSGGXXXGIGSRWRRGGKGRGRPSVYVTQDDFHVAELTVRESLAFAVRLSMGGRERDR-RARVEELLDVLGLRACAEVRVGNPLERGISGGEARRLSMGIGVAALESVRLLLLDEPTTGLDSSSAAEVMLLARKLASRRDRRVVVASVHQPSAEMFSLFDKVLVMVGGRQAFFGSASKAAD 1592
L V+ G M+A++G SGAGKST LD+++ +KK + G I L + S YV QDD H+ LTVRE++ +A RL+ G + R RV++++ LGL++CA++++G P++RGISGG+ RR+++G G+ R+L LDEPT+GLDS+SA EVM +++A + +V+A++H PS E SLFDK++++ GR AF G+ +A D
Sbjct: 45 LVDNVSVTVKQGQMLAILGPSGAGKSTLLDVMSFRKKHMD-GGSITLNNQ-----------PLSAMTMAQVSSYVEQDDQHLGVLTVRETITYAARLTQSGMTKGEIRTRVDQIITDLGLQSCADLKIGTPIQRGISGGQRRRVTVGTGLVTFP--RVLFLDEPTSGLDSTSAREVMASIKRIA-EAEGIIVIATIHAPSIEALSLFDKMMILAQGRTAFLGTLQQAND 258
BLAST of mRNA_E-siliculosus-1a_F_contig1078.547.1 vs. uniprot
Match: A0A427XLU8_9TREE (ABC transporter domain-containing protein n=1 Tax=Apiotrichum porosum TaxID=105984 RepID=A0A427XLU8_9TREE) HSP 1 Score: 154 bits (389), Expect = 7.510e-36 Identity = 94/227 (41.41%), Postives = 141/227 (62.11%), Query Frame = 3 Query: 909 LTQGVNCRFCAGDMVAVIGASGAGKSTFLDLLAGKKKEGECAGQILLTQSGGXXXGIGSRWRRGGKGRGRPSVYVTQDDFHVAELTVRESLAFAVRLSMGGRERDR-RARVEELLDVLGLRACAEVRVGNPLERGISGGEARRLSMGIGVAALESVRLLLLDEPTTGLDSSSAAEVMLLARKLASRRDRRVVVASVHQPSAEMFSLFDKVLVMVGGRQAFFGSASKA 1586
L V+ + G+M+A++G SGAGKST LDL+A +K+ + G++ L + S YV QDD H+ LTVRE++++A RLS G R + R RV+E++ LGL++CA ++G P++RGISGG+ RR+++G G+ R+L LDEPT+GLDSSSA EVM R++A + V+A++H PS E LFD+++V+ G+ AF GS +A
Sbjct: 65 LVDDVSVKVGQGEMLAIMGPSGAGKSTLLDLMAFRKRAMD-GGEVRLNGN-----------LLSNSTMSHVSSYVEQDDEHLGVLTVRETISYASRLSASGFSRSQTRQRVDEIIQALGLQSCANQKIGTPIQRGISGGQKRRVTVGTGLVTYP--RILFLDEPTSGLDSSSAREVMASIRRIA-EAEGITVIATIHAPSIETLELFDQLMVLAKGKVAFLGSLVEA 276 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1078.547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1078.547.1 >prot_E-siliculosus-1a_F_contig1078.547.1 ID=prot_E-siliculosus-1a_F_contig1078.547.1|Name=mRNA_E-siliculosus-1a_F_contig1078.547.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=675bp MSRRDMHSTQSSINSSSRQPSSASSAAAGGGGGAAAALTEEEEAHQRQLRback to top mRNA from alignment at E-siliculosus-1a_F_contig1078:29905..35913+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1078.547.1 ID=mRNA_E-siliculosus-1a_F_contig1078.547.1|Name=mRNA_E-siliculosus-1a_F_contig1078.547.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6009bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1078:29905..35913+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1078:29905..35913+ >mRNA_E-siliculosus-1a_F_contig1078.547.1 ID=mRNA_E-siliculosus-1a_F_contig1078.547.1|Name=mRNA_E-siliculosus-1a_F_contig1078.547.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4050bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1078:29905..35913+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |