mRNA_E-siliculosus-1a_F_contig1078.546.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1078.546.1 vs. uniprot
Match: D8LSM3_ECTSI (Co-chaperone grpE family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM3_ECTSI) HSP 1 Score: 475 bits (1222), Expect = 2.920e-165 Identity = 322/343 (93.88%), Postives = 326/343 (95.04%), Query Frame = 1 Query: 1 MRSATTSTLSRGAQRTRGTPLLSPGALRTSGYRERGLRLIMAAEPAEDSVAEAXXXXXXXXXXXXXSISEGEEAVEDEASGGGDGETEVVAEEGEGKEGEXXXXXXXXXXVDPMAEVKQQIKDLEKELMKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLETETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEKKXXXXXXXXXXXXXXXXXXXXXGXXXXEAEEPPMRDAGVDA---EGEQPEGEQAAA 1020
MRSATTSTL RGAQRTRGTPLLSPGALRTSGYRERG+ L+MAAEP+EDSVAEAXXXXXXXXXXX SISEGEEAVEDEASGGGD ETEVVAEEGEGKEGEXXXXXXXXX VDPMAEVKQQIKDLEKELMKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNL TETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEK+ XXXXXXXXXXXXXXXXXXX XXXX PPMRDAGVDA EGEQPEGEQAAA
Sbjct: 1 MRSATTSTLFRGAQRTRGTPLLSPGALRTSGYRERGVHLMMAAEPSEDSVAEAXXXXXXXXXXX--SISEGEEAVEDEASGGGDVETEVVAEEGEGKEGEXXXXXXXXX-VDPMAEVKQQIKDLEKELMKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLATETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEKEEPXXXXXXXXXXXXXXXXXXXXXXXXP---PPMRDAGVDAAAPEGEQPEGEQAAA 337
BLAST of mRNA_E-siliculosus-1a_F_contig1078.546.1 vs. uniprot
Match: A0A6H5KMN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN5_9PHAE) HSP 1 Score: 330 bits (846), Expect = 4.500e-110 Identity = 206/215 (95.81%), Postives = 209/215 (97.21%), Query Frame = 1 Query: 385 MKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLETETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEKKXXXXXXXXXXXXXXXXXXXXXGXXXXEAEEPPMRDAGVDA---EGEQPEGEQAAA 1020
MKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLETETEVKYNKSYQALYRQLKDVFTK+GATDFFGVVGEKFVYTRHEKASEE+NPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEKK XXXXXXXXXXXXXXXXXXXX XXXEAEEPPMRDAGVDA EGE+PEGEQAAA
Sbjct: 1 MKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLETETEVKYNKSYQALYRQLKDVFTKVGATDFFGVVGEKFVYTRHEKASEEYNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEKKEXXXXXXXXXXXXXXXXXXXX--XXXEAEEPPMRDAGVDAASPEGEEPEGEQAAA 213
BLAST of mRNA_E-siliculosus-1a_F_contig1078.546.1 vs. uniprot
Match: A0A6H5KJC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC6_9PHAE) HSP 1 Score: 130 bits (326), Expect = 1.750e-32 Identity = 109/124 (87.90%), Postives = 112/124 (90.32%), Query Frame = 1 Query: 4 RSATTSTLSRGAQRTRGTPLLSPGALRTSGYRERGLRLIMAAEPAEDSVAEAXXXXXXXXXXXXX--SISEGEEAVE-DEASGGGDGETEVVAEEGEGKEGEXXXXXXXXXXVDPMAEVKQQIK 366
RSATTSTL RGAQRTRGTPLLSPGALRTSGYRERG+ L+MAAEP EDSVAEAXXXXXXXXXXXXX SISEGEEAVE DEASGGG GETEVVAEEG+G XXXXXXXXX VDPMAEVKQQIK
Sbjct: 52 RSATTSTLYRGAQRTRGTPLLSPGALRTSGYRERGVHLMMAAEPTEDSVAEAXXXXXXXXXXXXXXPSISEGEEAVEYDEASGGGYGETEVVAEEGDGTXX-XXXXXXXXXEVDPMAEVKQQIK 174
BLAST of mRNA_E-siliculosus-1a_F_contig1078.546.1 vs. uniprot
Match: A0A835ZD01_9STRA (GrpE-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD01_9STRA) HSP 1 Score: 114 bits (285), Expect = 6.490e-26 Identity = 66/132 (50.00%), Postives = 83/132 (62.88%), Query Frame = 1 Query: 475 NFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAA---EEALNLETETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEK 861
N+RK +A+A A VLR+ P E FEA E L LETE E +N +YQALYRQL DV+TK+G TDFFGV GE + RHEK E+H + + G +++C++ G EL VIRKA V SLGPEK
Sbjct: 93 NYRKRRNLDQKKLQAEAMARVLRSFEPVLEAFEAVVDGETDLKLETEQEQMFNSNYQALYRQLADVYTKLGVTDFFGVQGETYDGIRHEKVGEQHADI-RAGAVLECLAKGNELSGGVIRKAKVVTSLGPEK 223
BLAST of mRNA_E-siliculosus-1a_F_contig1078.546.1 vs. uniprot
Match: A0A7S3XS89_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS89_HETAK) HSP 1 Score: 85.1 bits (209), Expect = 8.870e-15 Identity = 57/164 (34.76%), Postives = 87/164 (53.05%), Query Frame = 1 Query: 367 DLEKELMKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALN--LETETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLG 852
DLEK+L E + ++ D+V E G+ G++R AA VDN++++ + + A L +P + FE A + E E K SY ALY QL F K+G + VGE + RHEK E + K+G +++ ++PG+EL ++IR A VVS G
Sbjct: 103 DLEKQLSALEVKAKEAADNVLESGKTGYMRAAADVDNYKRALAKDLDQVKKTSMAGALTGFMPILDRFEEVYGAFDPAATPEGEAKLYGSYHALYGQLTLGFEKLGMAQYRAEVGEAYSVLRHEKTQEVESEA-KKGTVVEALAPGMELGGSIIRPARVVVSAG 265
BLAST of mRNA_E-siliculosus-1a_F_contig1078.546.1 vs. uniprot
Match: A0A7S4D635_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D635_HETAK) HSP 1 Score: 84.7 bits (208), Expect = 2.620e-14 Identity = 57/164 (34.76%), Postives = 86/164 (52.44%), Query Frame = 1 Query: 367 DLEKELMKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALN--LETETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLG 852
DLEK+L E + ++ D+V E G+ G++R AA VDN++++ + + A L +P + FE A + E E K SY ALY QL F K+G + VGE + RHEK E + K+G +++ ++PG+EL +IR A VVS G
Sbjct: 201 DLEKQLSALEVKAKEAADNVLESGKTGYMRAAADVDNYKRALAKDLDQVKKTSMAGALTGFMPILDRFEEVYGAFDPAATPEGEAKLYGSYHALYGQLTLGFEKLGMAQYRAEVGEAYSVLRHEKTQEVESEA-KKGTVVEALAPGMELGGTIIRPARVVVSAG 363
BLAST of mRNA_E-siliculosus-1a_F_contig1078.546.1 vs. uniprot
Match: A0A7S2LF94_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LF94_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 1.930e-12 Identity = 57/174 (32.76%), Postives = 94/174 (54.02%), Query Frame = 1 Query: 340 MAEVKQQIKDLEKELMKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLETETEVKYNKSYQALYRQLKDVFT-KIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPE 858
M +K++I LE L + L V D + + G++R A++DN+RK S + + ++AAV+R LP E E LE + E +Y+AL L++V K+ +++ VG++F Y R+ +EE + + +G II+ +SPGLE+K NV+R A + S G E
Sbjct: 108 MVALKEEISKLEATLRSKRAALSGVLDEAELYTETGYMRTLAEMDNYRKRSEISSQNNRYSSRAAVVRQFLPILEELEM------LERQYE---GSAYKALRWDLQNVLQEKLDMSEYHAEVGDEFSYIRYNAVAEEFSEEVAKGCIIRQISPGLEIKGNVLRAADVIKSKGSE 272
BLAST of mRNA_E-siliculosus-1a_F_contig1078.546.1 vs. uniprot
Match: A0A7S2V060_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V060_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 2.670e-11 Identity = 65/220 (29.55%), Postives = 111/220 (50.45%), Query Frame = 1 Query: 214 EEAVEDEASGGGDGETEVVAEEGEGKEGEXXXXXXXXXXVDPMAEVKQQIKDLEKELMKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEA----AEEALNLETETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKAS--EEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGP 855
E AVE++ GD EV A+ E ++ E DP+AE+KQQI+ + + + G+ G++ +AA+ DN+++SS + A A V+ +P + FEA AE NL +E +K +++YQAL RQ+ +F +GA+ F VG + ++ +S E N K+G++++ + G E+ +IR A CV+ + P
Sbjct: 67 EPAVENKVPEDGDEAAEVEAKPEEPEDAEE---------ADPLAELKQQIEXXXXXXXXXXXXXXISKRKILDNGKTGYVTIAAEADNYKRSSKSTIDSLGTRAMAEVISDFMPLVDKFEAIKETAEATENL-SEDVLKIHRNYQALPRQMMTIFEGLGASSFDATVGSQIDPIKNVASSTREPANDKEKDGMVVEALKSGFEINGVIIRPASCVMCVVP 276
BLAST of mRNA_E-siliculosus-1a_F_contig1078.546.1 vs. uniprot
Match: A0A7S1T8I4_9CHLO (GrpE protein homolog n=2 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T8I4_9CHLO) HSP 1 Score: 72.8 bits (177), Expect = 1.320e-10 Identity = 51/157 (32.48%), Postives = 80/157 (50.96%), Query Frame = 1 Query: 379 ELMKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLETETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSL 849
E + E N +Q+S+ + +LR A +NFRK S K V+ LP + FE A + L LETE E K + SYQA+YRQ+ ++F +G T VG+ F +HE +E + +++GLI+ G L ++R A+ V++
Sbjct: 139 ESVNEVNAAVKLQESIALAAKEQYLRSTADFENFRKRSQIEKDALRDSVKGDVVSDFLPLVDNFELASKQLKLETEAEKKIDASYQAMYRQMVEIFKNLGVTAV-ETVGKPFDPEKHEAIMQEESTEVEDGLILDEFRRGFMLGSKLLRPAMVKVAI 294
BLAST of mRNA_E-siliculosus-1a_F_contig1078.546.1 vs. uniprot
Match: A0A835RLD5_VANPL (GrpE protein homolog n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835RLD5_VANPL) HSP 1 Score: 72.4 bits (176), Expect = 5.190e-10 Identity = 45/139 (32.37%), Postives = 73/139 (52.52%), Query Frame = 1 Query: 448 FLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLETETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEKK 864
FLR+ A + NFRKS+ + AD +A V+ +LP + FE A+ + ETE E K + SYQ +Y+Q ++ + + VG F + HE + E + K G++++ + G L V+R A+ VS GP +
Sbjct: 675 FLRINADLKNFRKSAEKDRLSFTADIRAEVVEHLLPLIDNFERAKHQMKPETEREKKIDSSYQGIYKQFVEIMRSMRVS-VVETVGRPFDPSIHEAIAREESNQFKSGIVMQELRRGFYLCDQVLRPAIVKVSTGPRSE 812 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1078.546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 15 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1078.546.1 >prot_E-siliculosus-1a_F_contig1078.546.1 ID=prot_E-siliculosus-1a_F_contig1078.546.1|Name=mRNA_E-siliculosus-1a_F_contig1078.546.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=341bp MRSATTSTLSRGAQRTRGTPLLSPGALRTSGYRERGLRLIMAAEPAEDSVback to top mRNA from alignment at E-siliculosus-1a_F_contig1078:25374..29584- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1078.546.1 ID=mRNA_E-siliculosus-1a_F_contig1078.546.1|Name=mRNA_E-siliculosus-1a_F_contig1078.546.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4211bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1078:25374..29584- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1078:25374..29584- >mRNA_E-siliculosus-1a_F_contig1078.546.1 ID=mRNA_E-siliculosus-1a_F_contig1078.546.1|Name=mRNA_E-siliculosus-1a_F_contig1078.546.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2046bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1078:25374..29584- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |