mRNA_E-siliculosus-1a_F_contig1078.544.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1078.544.1 vs. uniprot
Match: D8LSM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM5_ECTSI) HSP 1 Score: 1220 bits (3156), Expect = 0.000e+0 Identity = 1121/1345 (83.35%), Postives = 1133/1345 (84.24%), Query Frame = 1 Query: 268 MVKDKAKAYISKLNEEKAALAKELQDKSNVLAXXXXXXXXXXXXXXXXXXXXXXXXXDQVKDRDGRLLRAKELLQAKLAAKDEELQAAQAEAKTLRDQAESAAAVSDHHPQANGGSGDADSPSEEAVAAARAAAEKEVKSLKGELQRVSEALEACEASRTETETLLAETKQAAEEATERVTAAAGERDDSLARAETLQASLEAXXXXXXXXXXXXXXXXXXXLEEVRRGSASDLEREQAAVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKEA----SDAAXXXXXXXXXXXXXXXXXXESTIEELRSKLAESEATRMEESGDKSETAAAALSXXXXXXXXXXXXXARREEALRAQVAGMEAEVASLREELRVVEEXXXXXXXXXXXXXXXXXXXXXXVEGSGTASGEPPVXXXXXXXXXXXXXXXXXXXXTDAKEEVDALVGRVAALEEELAASKLALHRQEEPAAE-----------AXXXXXGTEEEMEAIQERLRVAEQETVDLSAELSXXXXXXXXXXXXALEATQTAXXXXXXXXXXXEEEMEALRERLRVAEQETADLSAXXXXXXXXXXXXXXXXXXXXXXXQTAKDQXXXXXXXXXXXXXXXXXXXXXLSAARRETEKALEDSDKQAEELSSRLMGALEEREEGRRREAAAAKEAGRLREELAEATGELKRARAEVKSRDAAADESASEWARRVKEVEEKMEAAEAGAVEAVKALEDALTQREQEAERLTEEAAGLRKETSLVKAELEARGEALRQAKLDLASVLEDSTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDVLRDAIEXXXXERDAAAADVAASKTQLQALQAQVASLLKENAGAKTEAGLRVGDLQQRLTAAQDELGREREAIAERKKEMQAYAEAMAREGESLRAATKEAQTIAARATAAESESKSSVALVRREGEAAASNLRQALEKQAAEANRTVAALEERNVALESETSRLRHLMMAETGEREEKAQGLEQSLVTKIEEANLHKKKRLEARSMMISLDKTLEAERDGHKAVGHALQYKLVPKAIDQATVLERVVMTAELSVHRLSRAGGVRLATNLQAAQSSLARLRGRVAGADEPPVAWHQQQSSDLSRVALMGGSGSGSGMIGGGPEDASSSVISDRLDSPSGSAASGDQGGGPGFWRGSSRLGNQTPKDSIYLERVRRLESEMERVSSGLALVSQSVEQLSELVEVQASLCGGLSVLCCSSRRVGVGATATTRSGGRXXXXXXXXGPAYSTLEMGSRRLVEGAESESDAATPMSDDLGRTGKSVPGDKAVV 4257
MVKDKAK YISKLNEEKAALAKELQDKSNVLA XXXXXXXXXXXXXXXXXXXXXXXDQVKDRDGRLLRAKELLQAKLAAKDEELQAAQAEAKTLRDQAESAAAVS H PQANGGS ADSPSEEAVAAARAAAE+E+KSLKGELQRVSEALEACEASRTETETLLAETKQAAEEAT RVTAAAG RDD+LARAETLQASLEAXXXXXXXXXXXXXXXXXXXLEEVRRGSASDLEREQAAVR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KEA SDAAXXXXXXXXXXXXXXXXXX STIEELRSKLAES XXXXXXXXXXX ARREEALRAQVAGME EVASLREELRV EEXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXX GTEEEMEAI+ERLRVAEQET DLSAELS XXXXXXXX A XXXXXXXXXXX XXXXXXXXXXXXXXXXXX Q AKDQ XXXXXXXXXXXXXXXXX ARRETEKALEDSDKQAEELSSRLMGALEEREEGRRREAA AKEAGRLREELA ATGEL+RARAEVK RDAAADESAS WA RVKE+EEKMEAAEAGAVEAVKALEDALTQREQEAERLTEEAAGLRKETSLVKAELEARGEALRQAKLDLASVL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXX RDAAAADVA+SKTQLQALQAQVASLLKENAGAKTEAGLRVGDLQQRLTAAQDELGREREAIAERKKEMQAYA IAARATAAESESKS VALVRR+GEAAAS+LRQALEKQAAEA+RTVAALEERN ALESET RLRHLMM ETGEREEKAQGLEQSLVTKIEEANLHKKKRLEARSMMISLDKTLEAERDGHKAVGHALQYKLVPKAIDQATVLERVVMTAELSVHRLSRAGGVRLATNLQAAQSSLARLRGRVAGADEPPVAWHQQQSSDLSRVALMGGSGSGSGMIGG PEDASSSVISDRLDSPSGSAASGDQGGGPGFWRGSSRLGNQTPKDSIYLERVRRLESEMERVSSGLALVSQSVEQLSELVEVQASLCGGLSVLCCSSRRVGVGATATT SGGR XXXXGPAYSTLEMGSRRLVEG ESESDAATPMSD+LG+ GKSVPGDKAVV
Sbjct: 1 MVKDKAKTYISKLNEEKAALAKELQDKSNVLAGVXXXXXXXXXXXXXXXXXXXXXXXDQVKDRDGRLLRAKELLQAKLAAKDEELQAAQAEAKTLRDQAESAAAVSGHDPQANGGSAGADSPSEEAVAAARAAAEEEIKSLKGELQRVSEALEACEASRTETETLLAETKQAAEEATGRVTAAAGGRDDALARAETLQASLEAXXXXXXXXXXXXXXXXXXXLEEVRRGSASDLEREQAAVRALEERLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAAADASDAAXXXXXXXXXXXXXXXXXX-STIEELRSKLAESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAARREEALRAQVAGMEVEVASLREELRVAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAATAGTEEEMEAIRERLRVAEQETADLSAELSSEKEXXXXXXXXXXXAXXXXXXXXXXXXXXX------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXALEATQAAKDQETAEXXXXXXXXXXXXXXXXXX--ARRETEKALEDSDKQAEELSSRLMGALEEREEGRRREAAVAKEAGRLREELAGATGELERARAEVKGRDAAADESASVWASRVKELEEKMEAAEAGAVEAVKALEDALTQREQEAERLTEEAAGLRKETSLVKAELEARGEALRQAKLDLASVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDAAAADVASSKTQLQALQAQVASLLKENAGAKTEAGLRVGDLQQRLTAAQDELGREREAIAERKKEMQAYAXXXXXXXXXXXXXXXXXXXIAARATAAESESKSCVALVRRDGEAAASSLRQALEKQAAEASRTVAALEERNAALESETLRLRHLMMTETGEREEKAQGLEQSLVTKIEEANLHKKKRLEARSMMISLDKTLEAERDGHKAVGHALQYKLVPKAIDQATVLERVVMTAELSVHRLSRAGGVRLATNLQAAQSSLARLRGRVAGADEPPVAWHQQQSSDLSRVALMGGSGSGSGMIGGAPEDASSSVISDRLDSPSGSAASGDQGGGPGFWRGSSRLGNQTPKDSIYLERVRRLESEMERVSSGLALVSQSVEQLSELVEVQASLCGGLSVLCCSSRRVGVGATATT-SGGRRIRAXXXXGPAYSTLEMGSRRLVEGGESESDAATPMSDNLGQPGKSVPGDKAVV 1329
BLAST of mRNA_E-siliculosus-1a_F_contig1078.544.1 vs. uniprot
Match: A0A6H5KJQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJQ3_9PHAE) HSP 1 Score: 1158 bits (2996), Expect = 0.000e+0 Identity = 1009/1367 (73.81%), Postives = 1024/1367 (74.91%), Query Frame = 1 Query: 226 MAEPDAAALRKELAMVKDKAKAYISKLNEEKAALAKELQDKSNVLAXXXXXXXXXXXXXXXXXXXXXXXXXDQVKDRDGRLLRAKELLQAKLAAKDEELQAAQAEAKTLRDQAESAAAVSDHHPQANGGSGDADSPSEEAVAAARAAAEKEVKSLKGELQRVSEALEACEASRTETETLLAETKQAAEEATERVTAAAGERDDSLARAETLQASLEAXXXXXXXXXXXXXXXXXXXLEEVRRGSASDLEREQAAVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKEASDAAXXXXXXXXXXXXXXXXXXESTIEELRSKLAESEATRMEESGDKSETAAAALSXXXXXXXXXXXXXARREEALRAQVAGMEAEVASLREELRVVEEXXXXXXXXXXXXXXXXXXXXXXVEGSGTASGEPPVXXXXXXXXXXXXXXXXXXXXTDAKEEVDALVGRVAALEEELAASKLALHRQEEPAAEAXXXXXGTEEEMEAIQERLRVAEQETVDLSAELSXXXXXXXXXXXXALEATQTAXXXXXXXXXXXE-----------------------EEMEALRERLRVAEQETADLSAXXXXXXXXXXXXXXXXXXXXXXXQTAKDQXXXXXXXXXXXXXXXXXXXXXLSAARRETEKALEDSDKQAEELSSRLMGALEEREEGRRREAAAAKEAGRLREELAEATGELKRARAEVKSRDAAADESASEWARRVKEVEEKMEAAEAGAVEAVKALEDALTQREQEAERLTEEAAGLRKETSLVKAELEARGEALRQAKLDLASVLEDSTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDVLRDAIEXXXXERDAAAADVAASKTQLQALQAQVASLLKENAGAKTEAGLRVGDLQQRLTAAQDELGREREAIAERKKEMQAYAEAMAREGESLRAATKEAQTIAARATAAESESKSSVALVRREGEAAASNLRQALEKQAAEANRTVAALEERNVALESETSRLRHLMMAETGEREEKAQGLEQSLVTKIEEANLHKKKRLEARSMMISLDKTLEAERDGHKAVGHALQYKLVPKAIDQATVLERVVMTAELSVHRLSRAGGVRLATNLQAAQSSLARLRGRVAGADEPPVAWHQQQSSDLSRVALMGGSGSGSGMIGGGPEDASSSVISDRLDSPSGSAASGDQGGGPGFWRGSSRLGNQTPKDSIYLERVRRLESEMERVSSGLALVSQSVEQLSELVEVQASLCGGLSVLCCSSRRVGVGATATTRSGGRXXXXXXXXGPAYSTLEMGSRRLVEGAESESDAATPMSDDLGRTGKSVPGDKAVV 4257
MAEPDAAALRKELAMVKDKAKAYISKLNEEKAALAKELQDKSNVLAXXXXXXXXXXXXXXXXXXXXXXXX DQVKDRDGRLLRA+ELLQAKLAAKDEELQAAQAEAKTLRDQAESAA H PQAN GS ADSPSEEAVA RAAAE+E+KSLKGELQRVSEALEACEASRTETETLLAETKQAA AA ERDD+LARAETLQASLEAXXXXXXXXXXXXXXXXXXX +A L E A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ESTIEELRSKLAESEA MEESGDK+E ALS ARREEALRAQV GMEAEVASLREELRV EE E S ASGE PV XXXXXXXXXXXX D KEEVDALVGRVAALEEELAASKLALH XXXXX EEMEAI+ RLRVAEQET DLSAELS XXXXXXXXX XXXXXXXXXXX E XXXXXXXXXXXXXXXXXXXXX Q AKDQ XXXXXXXXXXXXXXX RETEKALEDSDKQAEELSSRLMGALEER AGAVEAVKALEDALTQREQEAERLTEE AGLRKETSLVKAELEARGEALRQAKLDLASVLEDSTAT XXXXXXXXXXXXXXXXXXXXXXX X VDVLRDAIE ERDAAAADVAASKTQLQALQAQVASLLKENAGAKTEAGLRVGDLQQRL AAQDELGRE+EAIAERKKEMQAYAEAMAREGE+LR ATKEAQ IAARATAAESESKS VALVRREGEA AS+LRQALEKQAAEA+R VAALEERN ALESETSRL+HLMM ETGEREEKAQGLEQSLVTKIEEANLHKKKRLEARSMMISLDKTLEAERDGHKAVGHALQYKLVPKAIDQATVLERVVMTAELSVHRLSRAGGVRLATNLQAAQSSLARLRGRVAGADEPPVAWHQ+QSSDLSRVALMGGSG S MIGGGPEDA+SSVISDRLDSPSGSAASGDQGGGPGFWRGSSRLGNQTPKDSIYLERVRRLESEMERVSSGLALVSQSVEQLSELVEVQASLCGGLSVLCCSSR XXXXXXXX PAYSTLEMGSRRLVEG ESESDAATP+SDDL R GKSVPGDKAVV
Sbjct: 1 MAEPDAAALRKELAMVKDKAKAYISKLNEEKAALAKELQDKSNVLAXXXXXXXXXXXXXXXXXXXXXXXXEDQVKDRDGRLLRAEELLQAKLAAKDEELQAAQAEAKTLRDQAESAAXXXGHXPQANRGSXGADSPSEEAVAXXRAAAEEEMKSLKGELQRVSEALEACEASRTETETLLAETKQAAAXXXXXXXXAARERDDALARAETLQASLEAXXXXXXXXXXXXXXXXXXXXXXXXXSTAEGLRAELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQ---------------------------------------ESTIEELRSKLAESEAAEMEESGDKAEXXXXALSQAKAGRAEAESEAARREEALRAQVVGMEAEVASLREELRVAEEEKEIAAAAATAAEKDTDGTGSSAERSCAASGELPVAAVDSTDGXXXXXXXXXXXXXDTKEEVDALVGRVAALEEELAASKLALHXXXXXXXXXXXXXXXXXEEMEAIRGRLRVAEQETADLSAELSSAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATQAAKDQETAEEAXXXXXXXXXXXXXXXXXX--RETEKALEDSDKQAEELSSRLMGALEERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAVEAVKALEDALTQREQEAERLTEEVAGLRKETSLVKAELEARGEALRQAKLDLASVLEDSTATGAKLSEARSSXXXXXXXXXXXXXXXXXXXXXXXGLKXAVIETNETVSKRVDVLRDAIEKVEAERDAAAADVAASKTQLQALQAQVASLLKENAGAKTEAGLRVGDLQQRLAAAQDELGREKEAIAERKKEMQAYAEAMAREGETLRTATKEAQAIAARATAAESESKSIVALVRREGEATASSLRQALEKQAAEASRAVAALEERNAALESETSRLQHLMMTETGEREEKAQGLEQSLVTKIEEANLHKKKRLEARSMMISLDKTLEAERDGHKAVGHALQYKLVPKAIDQATVLERVVMTAELSVHRLSRAGGVRLATNLQAAQSSLARLRGRVAGADEPPVAWHQRQSSDLSRVALMGGSGGASSMIGGGPEDANSSVISDRLDSPSGSAASGDQGGGPGFWRGSSRLGNQTPKDSIYLERVRRLESEMERVSSGLALVSQSVEQLSELVEVQASLCGGLSVLCCSSRXXXXXXXXXXXXXXXXXXXXXXX-PAYSTLEMGSRRLVEGGESESDAATPVSDDLSRPGKSVPGDKAVV 1325 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1078.544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1078.544.1 >prot_E-siliculosus-1a_F_contig1078.544.1 ID=prot_E-siliculosus-1a_F_contig1078.544.1|Name=mRNA_E-siliculosus-1a_F_contig1078.544.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1345bp MAEPDAAALRKELAMVKDKAKAYISKLNEEKAALAKELQDKSNVLAGVKDback to top mRNA from alignment at E-siliculosus-1a_F_contig1078:3016..19336- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1078.544.1 ID=mRNA_E-siliculosus-1a_F_contig1078.544.1|Name=mRNA_E-siliculosus-1a_F_contig1078.544.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=16321bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1078:3016..19336- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1078:3016..19336- >mRNA_E-siliculosus-1a_F_contig1078.544.1 ID=mRNA_E-siliculosus-1a_F_contig1078.544.1|Name=mRNA_E-siliculosus-1a_F_contig1078.544.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=8070bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1078:3016..19336- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |