mRNA_E-siliculosus-1a_F_contig10775.542.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10775.542.1 vs. uniprot
Match: D8LGJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ8_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 2.610e-15 Identity = 43/74 (58.11%), Postives = 47/74 (63.51%), Query Frame = 1 Query: 43 MKGGAAQ-SSQISANALPDVGGGSRGICRCSRRAYQGGEQQQGFFAGGWEEPEFTWQWREDPTLLRPTKSGWYL 261
MKGGAAQ SSQISANALPDVGG + + + F AGGWEEPE WQWREDP R +SGWYL
Sbjct: 1 MKGGAAQQSSQISANALPDVGGAAWAFVVVVGALTRVVSSSRFFLAGGWEEPESAWQWREDPRQDR--QSGWYL 72
BLAST of mRNA_E-siliculosus-1a_F_contig10775.542.1 vs. uniprot
Match: D8LR06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR06_ECTSI) HSP 1 Score: 67.8 bits (164), Expect = 5.750e-13 Identity = 39/63 (61.90%), Postives = 39/63 (61.90%), Query Frame = 3 Query: 3 GGQRWAFRLGGSPDEGGSCT-VITDLRQRASRCRGGQPGHLSL*SARLPGWRAAAGFFCGWVG 188
GGQR FRL GSPDEGGSCT VITDLRQRASRCRGG G G GFF VG
Sbjct: 3 GGQRRTFRLDGSPDEGGSCTAVITDLRQRASRCRGGSVGICRCSRRAYQGGEQPQGFFLPVVG 65
BLAST of mRNA_E-siliculosus-1a_F_contig10775.542.1 vs. uniprot
Match: A0A6H5KB56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB56_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 2.640e-9 Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 3 Query: 3 GGQRWAFRLGGSPDEGGSCTVITDLRQRASRCRGG 107
GG F LGGS DEGGSC+VITDLRQRASRCRGG
Sbjct: 5 GGAAQGFLLGGSQDEGGSCSVITDLRQRASRCRGG 39 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10775.542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10775.542.1 >prot_E-siliculosus-1a_F_contig10775.542.1 ID=prot_E-siliculosus-1a_F_contig10775.542.1|Name=mRNA_E-siliculosus-1a_F_contig10775.542.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=88bp RGGSAGLFGWAVLQMKGGAAQSSQISANALPDVGGGSRGICRCSRRAYQGback to top mRNA from alignment at E-siliculosus-1a_F_contig10775:1924..2187+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10775.542.1 ID=mRNA_E-siliculosus-1a_F_contig10775.542.1|Name=mRNA_E-siliculosus-1a_F_contig10775.542.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=264bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10775:1924..2187+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10775:1924..2187+ >mRNA_E-siliculosus-1a_F_contig10775.542.1 ID=mRNA_E-siliculosus-1a_F_contig10775.542.1|Name=mRNA_E-siliculosus-1a_F_contig10775.542.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=528bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10775:1924..2187+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |