mRNA_E-siliculosus-1a_F_contig1076.534.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1076.534.1 vs. uniprot
Match: D7G7U8_ECTSI (Thylakoid lumenal 15 kDa protein, chloroplast (P15) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7U8_ECTSI) HSP 1 Score: 384 bits (986), Expect = 4.840e-130 Identity = 239/247 (96.76%), Postives = 240/247 (97.17%), Query Frame = 1 Query: 1 MATMIMKGLVVSAGVAGVAGFVPPSAGRSTAWRGHQVKMNLFNDAARCVPAVLLGVALTTSAPLLDSPATHTHTAVLGASPVFADDKGMSSVSDSKLSVGAASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLDTAKGTNPVSGVDTRDSLGCP 741
MATMIMKGLVVSAGVAGVAGFVPPSAGR TAWRG QV MNLFNDAARCVPAVLLGV LTTSAPLLDSPA HT AVLGASPVFADDKGMSSVSDSKLSVGAASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGL+TAKGTNPVSGVDTRDSLGCP
Sbjct: 1 MATMIMKGLVVSAGVAGVAGFVPPSAGRCTAWRGRQVTMNLFNDAARCVPAVLLGVTLTTSAPLLDSPAAHT--AVLGASPVFADDKGMSSVSDSKLSVGAASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLETAKGTNPVSGVDTRDSLGCP 245
BLAST of mRNA_E-siliculosus-1a_F_contig1076.534.1 vs. uniprot
Match: A0A835YUD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUD1_9STRA) HSP 1 Score: 169 bits (429), Expect = 1.610e-46 Identity = 116/160 (72.50%), Postives = 131/160 (81.88%), Query Frame = 1 Query: 259 KGMSSVSDSKLSVGAASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLDTAKGTNPVSGVDTRDSLGC 738
+G SSVSD+K+ GAAST D G+RK +TRGVN+ENAD+H KD+S VSFQQSLVRGTNF ++KL+ +GFFDA XXXXXXXXXXXXXXXXXXXXXXXXX YVSGATK EP IEGADFTDTFLRKDQ+ YLC + AKGTNPV+GVDT DSL C
Sbjct: 75 EGASSVSDTKMLSGAASTLDTGSRKIITRGVNLENADFHGKDMSGVSFQQSLVRGTNFASSKLIGSGFFDADLSNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVSGATKFEPKDIEGADFTDTFLRKDQIMYLCAI--AKGTNPVTGVDTADSLSC 232
BLAST of mRNA_E-siliculosus-1a_F_contig1076.534.1 vs. uniprot
Match: A0A7S2CVZ3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CVZ3_9STRA) HSP 1 Score: 132 bits (331), Expect = 1.520e-32 Identity = 107/175 (61.14%), Postives = 128/175 (73.14%), Query Frame = 1 Query: 226 VLGASPVFAD-DKGMSSVSDSKLSVGAAST--GDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLDTAKGTNPVSGVDTRDSLGCP 741
+L A+P FA+ D G S+V ++K+ G AST +GARKT+TRGV ++ A++ +DL+ VSFQQS +RG F+ KL+ A FFDA XXXXXXXXXXXXXXXXXXXXXXXXXXX GAT + A IEGADFTDTFLRKDQ + LC TAKGTNP +GVDTRDSL CP
Sbjct: 36 LLSATPAFAESDGGASNVENTKIMNGGASTIVNQRGARKTITRGVQLDKANFAGEDLTGVSFQQSQIRGGVFEKTKLLGASFFDATLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATSFKDAKIEGADFTDTFLRKDQQKELCA--TAKGTNPTTGVDTRDSLMCP 208
BLAST of mRNA_E-siliculosus-1a_F_contig1076.534.1 vs. uniprot
Match: A0A448ZI41_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZI41_9STRA) HSP 1 Score: 119 bits (298), Expect = 1.600e-27 Identity = 81/167 (48.50%), Postives = 108/167 (64.67%), Query Frame = 1 Query: 241 PVFADDKGMSSVSDSKLSVGAASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPA-IIEGADFTDTFLRKDQVRYLCGLDTAKGTNPVSGVDTRDSLGC 738
P FAD +G ++ S++K++ G AST G +TRGVN++N+++ ++L V+FQQS+VR +NFK A V XXXXXXXXXXXX ++ E YVSGAT E IEG+D+++TFLRKDQ +YLC TAKGTNPV+GVDTR+SL C
Sbjct: 68 PAFAD-QGATAASNAKITTGGASTLQSGRTIAITRGVNLDNSNFXGQNLKGVAFQQSIVRDSNFKGANXVXXXXXXXXXXXXXXXXXXXTLSNVEMAQFNRANLKNTVMKEVYVSGATLFEGVKSIEGSDWSETFLRKDQQKYLCEHPTAKGTNPVTGVDTRESLMC 233
BLAST of mRNA_E-siliculosus-1a_F_contig1076.534.1 vs. uniprot
Match: W7U2G1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2G1_9STRA) HSP 1 Score: 120 bits (300), Expect = 9.540e-27 Identity = 95/154 (61.69%), Postives = 116/154 (75.32%), Query Frame = 1 Query: 280 DSKLSVGAASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLDTAKGTNPVSGVDTRDSLGCP 741
D K+ G+AST + G KT+TRGVNIENA++ KDL++VSFQQSLVR NF+ AK ++A FFDA XXXXXXXXXXXXXXXXXXXXXXXXXXX YVSGAT++ IEG+D++ TFLRKDQ YLC A G NP++ + T++SL CP
Sbjct: 171 DFKIKKGSASTLNSGTVKTMTRGVNIENANFEGKDLTTVSFQQSLVRDGNFRGAKCLSASFFDADLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVSGATRLTDIQIEGSDWSGTFLRKDQQTYLC--KRASGVNPITKISTKESLLCP 322
BLAST of mRNA_E-siliculosus-1a_F_contig1076.534.1 vs. uniprot
Match: A0A7S0TH33_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TH33_HEMAN) HSP 1 Score: 112 bits (280), Expect = 7.840e-25 Identity = 95/151 (62.91%), Postives = 111/151 (73.51%), Query Frame = 1 Query: 286 KLSVGAASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLDTAKGTNPVSGVDTRDSLGC 738
K+ GAAST D G+R+T+TRG ++N+ + + L +SFQQSL R +FK A L A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+V EAY+ TK++ IEGADFTDTFLRKDQ RYLC A GTNP +GVDT DSL C
Sbjct: 89 KVLQGAASTQDSGSRRTITRGATLDNSRFDGQKLDGISFQQSLCRDCDFKGASLKGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVNEAYILATTKLDGINIEGADFTDTFLRKDQQRYLCSR--ASGTNPKTGVDTYDSLLC 237
BLAST of mRNA_E-siliculosus-1a_F_contig1076.534.1 vs. uniprot
Match: A0A4D9CRG8_9STRA (Rhomboid domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRG8_9STRA) HSP 1 Score: 116 bits (290), Expect = 1.730e-24 Identity = 112/231 (48.48%), Postives = 140/231 (60.61%), Query Frame = 1 Query: 64 VPPSAGRSTAWRGHQVKMN------LFNDAARCVPAVL--LGVALTTSAPLLDSPATHTHTAVLGASPVFADDKGMSSVSDSKLSVGAASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLDTAKGTNPVSGVDTRDSL 732
+P +GR G Q ++ L A VP+ + LGV AP L +P H + +D K+ G+AST + G KT+TRGVNIENA++ KDL++VSFQQSLVR NF+ AK ++A FFDA XXXXXXXXXXXXXXXXXXXXXXXXXXX YVSGAT++ IEG+D++ TFLRKDQ YLC A G NPV+ V T++SL
Sbjct: 5 LPSRSGRGGKGEGGQTQLGASPTFYLARFAMALVPSSVTALGVGFGVLAPALVAPVPAVH---------------AQTDTDFKIKRGSASTLNSGTVKTMTRGVNIENANFEGKDLTTVSFQQSLVRDGNFRGAKCLSASFFDADLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVSGATRLTDIQIEGSDWSGTFLRKDQQTYLC--KRASGVNPVTKVSTKESL 218
BLAST of mRNA_E-siliculosus-1a_F_contig1076.534.1 vs. uniprot
Match: A0A1E7FD64_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FD64_9STRA) HSP 1 Score: 109 bits (272), Expect = 2.230e-24 Identity = 84/168 (50.00%), Postives = 117/168 (69.64%), Query Frame = 1 Query: 241 PVFA-DDKGMSSVSDSKLSVGAASTGDKGARKTVTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAI-IEGADFTDTFLRKDQVRYLCGLDTAKGTNPVSGVDTRDSLGC 738
P FA + G ++ +++K++ G AST G +TRGVN++ +D+ +++L V+FQQS+VR +NFK L + FF XXXXXXXXXXXXXXXXXXXXXX ++ E YVSG+T E IEG+D+++T+LR DQ + LC T+KGTNPV+GV+TR+SL C
Sbjct: 18 PAFAVEGGGATTAANAKITTGGASTLQSGRTIAITRGVNLDRSDFSNQNLKGVAFQQSIVRDSNFKGCNLYGSSFFXXXXXXXXXXXXXXXXXXXXXXXXNRANLHNTIMREVYVSGSTLFEGIKDIEGSDWSETYLRADQKKLLCEHPTSKGTNPVTGVNTRESLMC 185
BLAST of mRNA_E-siliculosus-1a_F_contig1076.534.1 vs. uniprot
Match: A0A7S3Y7I5_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Y7I5_9EUKA) HSP 1 Score: 110 bits (276), Expect = 2.660e-24 Identity = 97/158 (61.39%), Postives = 118/158 (74.68%), Query Frame = 1 Query: 277 SDSKLSVGAAST-GDKGARKT---VTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLDTAKGTNPVSGVDTRDSLGC 738
SDSK++ GAAST GDKG TRGV ++ +D+ KDLS VSFQQS+VR TNF FD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX++ EAY+SG+T + I+ +D+TDTF+RKDQ++YLC + A GTNP +GV TR+SLGC
Sbjct: 91 SDSKIAKGAASTSGDKGIAAQSGIATRGVILDYSDFSGKDLSGVSFQQSIVRKTNFXXXXXXXXXXFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINEAYISGSTVLRDINIKDSDWTDTFVRKDQLQYLCQI--ASGTNPTTGVGTRESLGC 246
BLAST of mRNA_E-siliculosus-1a_F_contig1076.534.1 vs. uniprot
Match: A0A7S2TUI3_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TUI3_9EUKA) HSP 1 Score: 110 bits (276), Expect = 2.780e-24 Identity = 97/158 (61.39%), Postives = 118/158 (74.68%), Query Frame = 1 Query: 277 SDSKLSVGAAST-GDKGARKT---VTRGVNIENADYHDKDLSSVSFQQSLVRGTNFKNAKLVAAGFFDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTEAYVSGATKMEPAIIEGADFTDTFLRKDQVRYLCGLDTAKGTNPVSGVDTRDSLGC 738
SDSK++ GAAST GDKG TRGV ++ +D+ KDLS VSFQQS+VR TNF FD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX++ EAY+SG+T + I+ +D+TDTF+RKDQ++YLC + A GTNP +GV TR+SLGC
Sbjct: 93 SDSKIAKGAASTSGDKGIAAQSGIATRGVILDYSDFSGKDLSGVSFQQSIVRKTNFXXXXXXXXXXFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIINEAYISGSTVLRDINIKDSDWTDTFVRKDQLQYLCQI--ASGTNPTTGVGTRESLGC 248 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1076.534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1076.534.1 >prot_E-siliculosus-1a_F_contig1076.534.1 ID=prot_E-siliculosus-1a_F_contig1076.534.1|Name=mRNA_E-siliculosus-1a_F_contig1076.534.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=248bp MATMIMKGLVVSAGVAGVAGFVPPSAGRSTAWRGHQVKMNLFNDAARCVPback to top mRNA from alignment at E-siliculosus-1a_F_contig1076:17596..21347- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1076.534.1 ID=mRNA_E-siliculosus-1a_F_contig1076.534.1|Name=mRNA_E-siliculosus-1a_F_contig1076.534.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3752bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1076:17596..21347- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1076:17596..21347- >mRNA_E-siliculosus-1a_F_contig1076.534.1 ID=mRNA_E-siliculosus-1a_F_contig1076.534.1|Name=mRNA_E-siliculosus-1a_F_contig1076.534.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1488bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1076:17596..21347- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |