mRNA_E-siliculosus-1a_F_contig1075.526.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1075.526.1 vs. uniprot
Match: D7G1Z3_ECTSI (Catabolite repression protein creC n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Z3_ECTSI) HSP 1 Score: 320 bits (820), Expect = 4.010e-96 Identity = 291/309 (94.17%), Postives = 292/309 (94.50%), Query Frame = 1 Query: 103 YVYPALSRQSTPRGEPLCCKRLAQVPLSQVMVVRAGVVTLCAEGLLKLWARPTMPPPLPPLQMDGADFGREKGDDSGSGGTSAAMDGQQEEAGTASPPLESSSLRSSPSYRGKAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAGLSVVGVAPSSGGGNKNDPSSRGGKNANAAVVSPLQPAALDALINTEILTPRADGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFSALSAANAKGRDPSELKGRKTASP 1029
YVYPALSRQSTPRGEPLCCKRLAQVPLSQVMVVRAGVVTLCAEGLLKLWARPTMPPPLPPLQMDGADFGR KGDDSGSGGTSAAMDGQQEEAGTASP LESSSLRSSPSYRGK V XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ATAAGLSVVGV PSSGGG+KNDPSSRGGKNANAAVVSPLQPAALDALINTEILTPRADG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GFSALSAANAKGRDPSELKGRK ASP
Sbjct: 852 YVYPALSRQSTPRGEPLCCKRLAQVPLSQVMVVRAGVVTLCAEGLLKLWARPTMPPPLPPLQMDGADFGRGKGDDSGSGGTSAAMDGQQEEAGTASPSLESSSLRSSPSYRGKTVAASVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAE-ATAAGLSVVGVDPSSGGGSKNDPSSRGGKNANAAVVSPLQPAALDALINTEILTPRADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFSALSAANAKGRDPSELKGRKAASP 1159
BLAST of mRNA_E-siliculosus-1a_F_contig1075.526.1 vs. uniprot
Match: A0A6H5L471_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L471_9PHAE) HSP 1 Score: 316 bits (810), Expect = 3.530e-94 Identity = 275/319 (86.21%), Postives = 282/319 (88.40%), Query Frame = 1 Query: 97 AGYVYPALSRQSTPRGEPLCCKRLAQVPLSQVMVVRAGVVTLCAEGLLKLWARPTMPPPLPPLQMDGADFGREKGDDSGSGGTSAAMDGQQEEAGTASPPLESSSLRSSPSYRGKAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAGLSVVGVAPSSGGGNKNDPSSRGGKNANAAVVSPLQPAALDALINTEILTPRADGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG---GFSALSAANAKGRDPSELKGRKTASPPDTRG 1044
AG+VYPALSRQ TPRGEPLCCKRLAQVPLSQVMVVRAGVVTLCA+GLLKLWARPTMPPPLPPLQ+DGADFGR+KGD+SGSGGTSAAM+ QQEEAGTASP LESSSLRSSPSYRGKAV XXXXXXXXXXXXXXXXXXXXX TAAGLSVVGV PSSGGGNKNDPSSR G+NANAAVVSPLQPAALDALINTEILTPRADG GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GFSALSAANAKGRDPSELKGRK ASPPDTRG
Sbjct: 988 AGHVYPALSRQLTPRGEPLCCKRLAQVPLSQVMVVRAGVVTLCADGLLKLWARPTMPPPLPPLQVDGADFGRKKGDNSGSGGTSAAMESQQEEAGTASPSLESSSLRSSPSYRGKAVAASVGXXXXXXXXXXXXXXXXXXXXXPGASASAGAVTTMAVNEP---TAAGLSVVGVDPSSGGGNKNDPSSRVGRNANAAVVSPLQPAALDALINTEILTPRADGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFSALSAANAKGRDPSELKGRKAASPPDTRG 1303
BLAST of mRNA_E-siliculosus-1a_F_contig1075.526.1 vs. uniprot
Match: A0A836CCN0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCN0_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 3.520e-14 Identity = 41/73 (56.16%), Postives = 50/73 (68.49%), Query Frame = 1 Query: 82 ESGGGAGYVYPA------LSRQSTPRGEPLCCKRLAQVPLSQVMVVRAGVVTLCAEGLLKLWARPTMPPPLPP 282
E+G GAG P L TP G PLCCK+LA++PL+QV V+R G+VTLC EGLLK+W RP +PPP PP
Sbjct: 777 EAGEGAGGTAPESKFNPPLKITETPTGTPLCCKQLARLPLTQVAVLRCGIVTLCEEGLLKVWQRPVIPPPQPP 849 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1075.526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1075.526.1 >prot_E-siliculosus-1a_F_contig1075.526.1 ID=prot_E-siliculosus-1a_F_contig1075.526.1|Name=mRNA_E-siliculosus-1a_F_contig1075.526.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=375bp KGGGGAGAAQGKAAEEEEGRGKEDEGRESGGGAGYVYPALSRQSTPRGEPback to top mRNA from alignment at E-siliculosus-1a_F_contig1075:1510..3185+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1075.526.1 ID=mRNA_E-siliculosus-1a_F_contig1075.526.1|Name=mRNA_E-siliculosus-1a_F_contig1075.526.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1676bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1075:1510..3185+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1075:1510..3185+ >mRNA_E-siliculosus-1a_F_contig1075.526.1 ID=mRNA_E-siliculosus-1a_F_contig1075.526.1|Name=mRNA_E-siliculosus-1a_F_contig1075.526.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2250bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1075:1510..3185+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |