mRNA_E-siliculosus-1a_F_contig1073.521.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1073.521.1 vs. uniprot
Match: D8LTU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU4_ECTSI) HSP 1 Score: 2294 bits (5944), Expect = 0.000e+0 Identity = 1266/1482 (85.43%), Postives = 1290/1482 (87.04%), Query Frame = 1 Query: 1 HGQPRPPANFPEFEGIDAERKRRFSAGDIFGGRTTASRLSYSAAEWGPLGTRSARRVVPSVGNEFPSWSDNNHRRNDDXXXXKXXDNSNINPSGEERHSDEQANTTPREPRRSPGDQGLALLREHPPAAQQDWPRTPPPTVPYDMLARDGWKIDSSPSIPSPCSGRRRRRASWSGPRDSRRPDDEQSSECQEVSPRAASVPPLLQLRWERQGVSGRAYQNDGNPSLYRKKKMAARRRLSKHEGVRAAIERGWWPYLPLRWVILNDQHVLKILPRQGYMLLFTAMYMTLVPTADEAEAKETARWEYGEDAKGLPQDLGRAGITLGAFSDALFAVADNWTETVRAKDYIEFLCLLWERVRPDVLFRPPPLEPESDDPPTAPSRHKGNHTAAAAKKIGRRNQKARRKNWRNDGDNVYSRLHEKSRKAANLLGIGDERWGXXXXXXXXXXXXXXXXXXXXXXXXXXXLPPPQTPDGLQQLCIPGFRPKEAQRAAWVRHKQRRIVDPGRGVLLAPEGMDGARGIHRGGGKGESSGGAKEXXXXXXXXXXXXXXXXXXXXXXRTRVTGILKEADRQRDVRTGGXXXXXXXXXXXXXEKEEMESIWDFITRNVPVNSRERDAFILFVERKQADLLDNNNNNINNKNYGRNPDVGAGDQTKLALGRPTSSPSPKRPAAXXXXXXXXXXXXXXXXXTVVRRYRTQEATWERARRQTVPSRALGELLEAWKSGQEGMAPAEYGAAFIGPPQARDRGARDSFLAYAIANGWGTRAGGAHSQQTLDGVAAEWRRGRGRCPEMGALWEVLRDLLWDEAEDAIGEALRDGVDLYSIPHRLLHDPPRVRQGHPSSSSSSIRRSSARPVVLLSPRQRGDYDH-QQRHRRASTAPASTDGAAAVEFDGGGVDGGDNGLDRHGGGEGPAGRVLLQGERVAGSVRQGQAAFYQTPCPTERGACLEITLESHDDGSRAPGRSNDNGIPTVISLYAVQAPHRPLRLSFYTWVSRGKTHHRLLLNWKGPATGLTGGDEGTLSPAPSPPRTGMIISSPWDGVRGYTSPRPATASASKPWKPVPPAXXXXXXXXXXXXXXXXXLAPAFDGSGIGILAAADKADETLDDRVIFGGDLQEPGRVEGGATRGSVGGQVA-PRRKRVRFTVRVREVGPPRVVLEGRWYSLPFGTDTGGGMTGPQPPAAFATLRLPTPLKVTRWGPDSYPEDPFGDRDVSVFAGEEGRPGVVDSETLVTLQARHSTSDPDGVDIYCGTSPRXXXXXXXXXXXXXXXXXXXXXXXXXAARLPVAPAPSQSVDGGGRSENNGTRGENDAAPGHRQPGDNHHGAAGEVAGAGVSRMTVAMPRDHTGAFHVGVFGRERRKTTTGGGTTRGGTINIKARARKRVTRLIEDQFVLKQLEFAQDFHRRFCPPGDDDERVPVLGSGRACQGVHTRPFLLASRRISPSQNEYTWRGTNAEGLVEVLRDSNRPGRVSTRYTETLQVCRLVF 4440
HGQPRPPANFPEFEG+DAERKRRFSAGDIFGGR TASRL YSAAEWGPLGTRSARRV SVGNE P WSDNNH XXXX XX SNIN S EERH+DEQANTT REP SPGDQGL LLREHP AAQQD P TPPPTVPYD LARDG KID PSIPSPCSGRRRRRASWSGPRDSRRPDDE+SSEC EVSPR ASVPPLLQLRWERQGVSGRAYQNDGNPSLYRKKKMAARRRLSKH+G+RAAIERGWWPYLPLRWVILNDQHVLKILPRQGY+LLFTAMYMTLVPTADEAEAKETARWEYGEDAKGLPQ+LGRAGITLGAFS+ALFAVADNWTETVRA DYIEFLC+LWERVRPDVLFRPPPL+PESDDPPTAPS+HKGNH AAAA KIGRRNQKARRKN DGD+ Y RLHE SRKAAN+LGIGDERW XXXXXXX LPPPQTPDGLQQL IPGFR KEAQRAAWVRHKQRRIVDPGRGVLLAPEGMDG RGIHRGGG+GE+SGGAKE XXXXXXXXXXXXXXXXXXXX TRVTGILKEADRQRDVRTGG EKEEMESIWDFITRNVPVNSRERDAFILFVERKQ DLLDNNNN INNKNYGRNPDVG GDQTK ALGRP SSPSPKRPAAXXXXXXXXXXXXXXXXXTVVRRYRTQEATWERARRQTVPSRALGELLEAW+SGQEGM PAEYGAAFIGPP+ R SFLAYAIANGWGTRAGG HSQQTLDGVAAEWRRG GRCPEM ALWEVLRDLLWDEAE AIGEAL DGVDLYSIPHRLLHDPPR RQGH SSSSSIRR+SARPV LLSPRQRGDYDH QQRHRRASTAPASTDGAAA EFDG GV GGDNG DRHGGGEGPAGRVLLQGERVAGSVRQGQAAFYQTPCPTERGACLEITLESHDDGSRAPGRSNDNGIPT ISLYAVQAPHRPLRLSFYTWVSRGKTHHRLLLNWKGPA GL GGDEGTLSPAPSPPRTG +ISSPWDGVRGYTSPRPATASASKPWKPVPPA XXXXXXXLAPAFDGSGIGILAA +ADETLDDR IFGG LQEPGRVEGGATRGSVGGQVA PRRKRVRFTVRVR VGPPRVVLEGRWYSLPFGTDTGGG TGP P AAFATLRLPTPL+ TRWGPDSYPEDPFGD DVSVFAGEE R G VDSETLVTLQARHST DPD VDIYCGTSPR XXXXXX AAR+P APAPSQ NHHGAAGEVAGAGVSRMTVAMPRDHTGAFHVGVFGRERRKTTTGGGT RGGTINIK VTRLI+DQFVLKQLEFAQDFHRRFCPPGDDDERVPVLGSGRACQGVHTRPFLLASRRISPSQNEY+WRGTN EGLVEVLRDSNRPGRV TRYTETLQVCRLVF
Sbjct: 21 HGQPRPPANFPEFEGVDAERKRRFSAGDIFGGRATASRLYYSAAEWGPLGTRSARRVAHSVGNEIPPWSDNNHXXXXXXXXXXXXXXSNINLSREERHTDEQANTTSREPHWSPGDQGLTLLREHPLAAQQDGPGTPPPTVPYDTLARDGRKIDYPPSIPSPCSGRRRRRASWSGPRDSRRPDDEESSECHEVSPRPASVPPLLQLRWERQGVSGRAYQNDGNPSLYRKKKMAARRRLSKHKGIRAAIERGWWPYLPLRWVILNDQHVLKILPRQGYILLFTAMYMTLVPTADEAEAKETARWEYGEDAKGLPQELGRAGITLGAFSEALFAVADNWTETVRANDYIEFLCVLWERVRPDVLFRPPPLKPESDDPPTAPSQHKGNHAAAAANKIGRRNQKARRKNRPKDGDDDYLRLHEMSRKAANVLGIGDERWRGGGXXXXXXXGREGEALDDNRRAPPTRLPPPQTPDGLQQLRIPGFRSKEAQRAAWVRHKQRRIVDPGRGVLLAPEGMDGLRGIHRGGGRGETSGGAKENQXXXXXXXXXXXXXXXXXXXXXTRVTGILKEADRQRDVRTGGGGGYRPKEEEAEVEKEEMESIWDFITRNVPVNSRERDAFILFVERKQPDLLDNNNN-INNKNYGRNPDVGVGDQTKPALGRPISSPSPKRPAAXXXXXXXXXXXXXXXXXTVVRRYRTQEATWERARRQTVPSRALGELLEAWRSGQEGMTPAEYGAAFIGPPK------RASFLAYAIANGWGTRAGGVHSQQTLDGVAAEWRRGSGRCPEMDALWEVLRDLLWDEAEGAIGEALSDGVDLYSIPHRLLHDPPRGRQGH-RSSSSSIRRNSARPV-LLSPRQRGDYDHHQQRHRRASTAPASTDGAAAAEFDGEGVGGGDNGFDRHGGGEGPAGRVLLQGERVAGSVRQGQAAFYQTPCPTERGACLEITLESHDDGSRAPGRSNDNGIPTAISLYAVQAPHRPLRLSFYTWVSRGKTHHRLLLNWKGPAAGLKGGDEGTLSPAPSPPRTGAVISSPWDGVRGYTSPRPATASASKPWKPVPPAPIHMAVVCPEXXXXXXXLAPAFDGSGIGILAATAQADETLDDRGIFGGVLQEPGRVEGGATRGSVGGQVATPRRKRVRFTVRVRVVGPPRVVLEGRWYSLPFGTDTGGGTTGPHPLAAFATLRLPTPLRATRWGPDSYPEDPFGDLDVSVFAGEEDRSGFVDSETLVTLQARHSTCDPDAVDIYCGTSPRPRPSPADHTWRMPIGGXXXXXXSGVAARVPGAPAPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHHGAAGEVAGAGVSRMTVAMPRDHTGAFHVGVFGRERRKTTTGGGTARGGTINIK------VTRLIDDQFVLKQLEFAQDFHRRFCPPGDDDERVPVLGSGRACQGVHTRPFLLASRRISPSQNEYSWRGTNTEGLVEVLRDSNRPGRVLTRYTETLQVCRLVF 1487
BLAST of mRNA_E-siliculosus-1a_F_contig1073.521.1 vs. uniprot
Match: A0A6H5K4Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Z7_9PHAE) HSP 1 Score: 1738 bits (4500), Expect = 0.000e+0 Identity = 1006/1244 (80.87%), Postives = 1031/1244 (82.88%), Query Frame = 1 Query: 4 GQPRPPANFPEFEGIDAERKRRFSAGDIFGGRTTASRLSYSAAEWGPLGTRSARRVVPSVGNEFPSWSDNNHRRNDDXXXXKXXDNSNINPSGEE--RHSDEQANTTPREPRRSPGDQGLALLREHPPAAQQDWPRTPPPTVPYDMLARDGWKIDSSPSIPSPCSGRRRRRASWSGPRDSRRPDDEQSSECQEVSPRAASVPPLLQLRWERQGVSGRAYQNDGNPSLYRKKKMAARRRLSKHEGVRAAIERGWWPYLPLRWVILNDQHVLKILPRQGYMLLFTAMYMTLVPTADEAEAKETARWEYGEDAKGLPQDLGRAGITLGAFSDALFAVADNWTETVRAKDYIEFLCLLWERVRPDVLFRPPPLEPESDDPPTAPSRHKGNHTAAAAKKIGRRNQKARRKNWRNDGDNVYSRLHEKSRKAANLLGIGDERWGXXXXXXXXXXXXXXXXXXXXXXXXXXXLPPPQTPDGLQQLCIPGFRPKEAQRAAWVRHKQRRIVDPGRGVLLAPEGMDGARGIHRGGGKGESSGGAKEXXXXXXXXXXXXXXXXXXXXXXRTRVTGILKEADRQRDVRTGGXXXXXXXXXXXXXEKEEMESIWDFITRNVPVNSRERDAFILFVERKQADLLDNNNNNINNKNYGRNPDVGAGDQTKLALGRPTSSPSPKRPAAXXXXXXXXXXXXXXXXXTV-----VRRYRTQEATWERARRQTVPSRALGELLEAWKSGQEGMAPAEYGAAFIGPPQARDRGARDSFL----AYAIANGWGTRAGGAHSQQTLDGVAAEWRRGRGRCPEMGALWEVLRDLLWDEAEDAIGEALRDGVDLYSIPHRLLHDPPRVRQGHPSSSSS--SIRRSSARPVVLLSPRQRGDYDHQQRHRRASTAPASTDGAAAVEFDGGGVDGGDNGLDRHGGGEGPAGRVLLQGERVAGSVRQGQAAFYQTPCPTERGACLEITLESHDDGSRAPGRSNDNGIPTVISLYAVQAPHRPLRLSFYTWVSRGKTHHRLLLNWKGPATGLTGGDEGTLSPAPSPPRTGMIISSPWDGVRGYTSPRPATASASKPWKPVPPAXXXXXXXXXXXXXXXXXLAPAFDGSGIGILAAADKADETLDDRVIFGGDLQEPGRVEGGATRGSVGGQVAPRRKRVRFTVRVREVGPPRVVLEGRWYSLPFGTDTGGGMTGPQPPAAFATLRLPTPLKVTRWGPDSYPEDPFGDRDVSVFAGEEGRPGVVDSETLVTLQAR 3696
GQPRPPANF EFEG+DAER RRFSAGDIFG R TASRLSYSAAEWGPLGTRSARRVVPSVGNEFP HR+ DD X XX SNI+PS EE RH+DEQANTTPREPRRSPGDQGLALLREHPPAAQQD P TPPPTVPYDMLA DG KIDS PSI SPCSG+RRRRASW GPR SRR D+EQ SEC + SPRAASVPP LQLRWERQGVSGR YQNDGNPSLYRKK GYMLLFTAMYMTLVPTADEAEAKETARWEYGEDAKGLPQDLGRAGITLGAFS+ALFAVADNWTETVR+KDYIEFLCLLWERVRPDVLFRP PL+PESDDPP IGRRNQKARRKNW NDGD+ SRLHEKS KAAN+LGIGDERW XXXXXXXX LPPPQTPDGLQQL IPGFRPKEAQRAAWVR+KQRRIVDPGRG+LL PEGMDGARGIHRGGGKGE+SG XXXXXXXXXXXXXXXXXX RTRVTGILKEADRQRDVRTGG E E+MESIWDFITR DAFILFVERK+ DLLDNNNN INNKNYGRN DVGAGDQTKLALGRP SSPSPKRPAAXXXXXXXXXXXXXXXXX VRRYRTQEATWERARRQTVP+RALGELLEAW+SGQEGM PAEYGAAFIGP QARDRGA + +YAIANGWGTRAGG HSQQTLDGVAAEWRRGRGRCPEM ALWEVLRDLLWDEAEDAI EAL DGVDLYSIPHRLLHDPPR RQGH SSSSS SIRRSS RPV L SPRQRGDYDHQQRHRRASTAPASTDGAAAVEFDGGGVDGGDNG DRHGGG+GP GRVLLQGERVAGSVRQGQAAFYQTPCPTERGACLEITLESHD GSRA GRSNDNGIPT ISLYAVQAPHRPLRLSFYTWVSRGKTHHRLLLNWKGPA GL GGDEGTLSPAPSPPRTG +ISSPWDGVRGYTSPRPATASASKPWKPVPPAXXXXXXXXXXXXXXXXXLAPAFDGSGIGILAA D+ADETLDDR IFGGDLQEP RV GAT GSVG QVAP RKRVRFTVRVR VGPPRVVLEGRWYSLPFGTDTG GMTGP P A FATLRLPTPLK TRWGPDSYP DPFGDRDVSVF+GEE RPG VDS TLVTLQ R
Sbjct: 18 GQPRPPANFLEFEGVDAERTRRFSAGDIFGSRATASRLSYSAAEWGPLGTRSARRVVPSVGNEFPPC----HRKYDDDNEXXXXXXSNISPSREEVHRHTDEQANTTPREPRRSPGDQGLALLREHPPAAQQDEPGTPPPTVPYDMLACDGRKIDSPPSILSPCSGQRRRRASWPGPRGSRRRDNEQPSECHKASPRAASVPPSLQLRWERQGVSGRTYQNDGNPSLYRKK---------------------------------------------GYMLLFTAMYMTLVPTADEAEAKETARWEYGEDAKGLPQDLGRAGITLGAFSNALFAVADNWTETVRSKDYIEFLCLLWERVRPDVLFRPLPLKPESDDPPXXXXXXXXXXXXXXXXXIGRRNQKARRKNWGNDGDDDNSRLHEKSPKAANVLGIGDERW-RGGXXXXXXXXREGEALDDDRRAPPTRLPPPQTPDGLQQLRIPGFRPKEAQRAAWVRYKQRRIVDPGRGILLTPEGMDGARGIHRGGGKGENSGXXXXXXXXXXXXXXXXXXXXXXMGRRRTRVTGILKEADRQRDVRTGGGGGYRPKEEEVEVEMEKMESIWDFITRX--------DAFILFVERKRPDLLDNNNN-INNKNYGRNSDVGAGDQTKLALGRPNSSPSPKRPAAXXXXXXXXXXXXXXXXXXXXXXXXVRRYRTQEATWERARRQTVPARALGELLEAWRSGQEGMTPAEYGAAFIGPLQARDRGAAAWLMRGRVSYAIANGWGTRAGGCHSQQTLDGVAAEWRRGRGRCPEMDALWEVLRDLLWDEAEDAIDEALSDGVDLYSIPHRLLHDPPRGRQGHRSSSSSIRSIRRSSTRPV-LPSPRQRGDYDHQQRHRRASTAPASTDGAAAVEFDGGGVDGGDNGFDRHGGGKGPEGRVLLQGERVAGSVRQGQAAFYQTPCPTERGACLEITLESHDTGSRARGRSNDNGIPTAISLYAVQAPHRPLRLSFYTWVSRGKTHHRLLLNWKGPAAGLKGGDEGTLSPAPSPPRTGKLISSPWDGVRGYTSPRPATASASKPWKPVPPAXXXXXXXXXXXXXXXXXLAPAFDGSGIGILAAPDQADETLDDRGIFGGDLQEPARVVDGATTGSVGRQVAPTRKRVRFTVRVRVVGPPRVVLEGRWYSLPFGTDTGEGMTGPHPLATFATLRLPTPLKATRWGPDSYPADPFGDRDVSVFSGEEDRPGFVDSATLVTLQVR 1201
BLAST of mRNA_E-siliculosus-1a_F_contig1073.521.1 vs. uniprot
Match: A8J754_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8J754_CHLRE) HSP 1 Score: 60.1 bits (144), Expect = 3.700e-5 Identity = 44/136 (32.35%), Postives = 63/136 (46.32%), Query Frame = 1 Query: 652 YQNDGNPSLYRKKKMAARRRLSKHEGVRAAIERGWWPYLP---LRWVILNDQHVLKILPRQGYMLLFTAMYMTLVPTADEAEAKETARWEYGEDAKGLPQDLGRAGITLGAFSDALFAVADNWTETVRAKDYIEFL 1050
Y GN +Y + + ARR + H V A+ R WW +LP R V+L + L +LPR G + P D AE ++ +D KGLP + F DA+F +AD W++TV +Y E L
Sbjct: 271 YAKQGNAEMYTEDALLARRAVRTHPAVVEAV-RAWWRWLPKSSTRVVVLGEADELVLLPRFG---------LPSDPDYDPAE-------DWLDDNKGLPY------MDFPNFFDAMFELADMWSDTVAGPEYAELL 383 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1073.521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1073.521.1 >prot_E-siliculosus-1a_F_contig1073.521.1 ID=prot_E-siliculosus-1a_F_contig1073.521.1|Name=mRNA_E-siliculosus-1a_F_contig1073.521.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1481bp HGQPRPPANFPEFEGIDAERKRRFSAGDIFGGRTTASRLSYSAAEWGPLGback to top mRNA from alignment at E-siliculosus-1a_F_contig1073:16432..29905+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1073.521.1 ID=mRNA_E-siliculosus-1a_F_contig1073.521.1|Name=mRNA_E-siliculosus-1a_F_contig1073.521.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=13474bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1073:16432..29905+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1073:16432..29905+ >mRNA_E-siliculosus-1a_F_contig1073.521.1 ID=mRNA_E-siliculosus-1a_F_contig1073.521.1|Name=mRNA_E-siliculosus-1a_F_contig1073.521.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=8886bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1073:16432..29905+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |