mRNA_E-siliculosus-1a_F_contig10725.518.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10725.518.1 vs. uniprot
Match: D8LBB2_ECTSI (Novel protein (Wu:fd05a10) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB2_ECTSI) HSP 1 Score: 240 bits (613), Expect = 1.400e-76 Identity = 118/125 (94.40%), Postives = 122/125 (97.60%), Query Frame = 1 Query: 85 MDYHQHRQGGGKLYAQAPS-GDHASIVSSIAPFDTVCSGGSTSTSSSNARRSLDESEVLRCINEYRREHGAPMLRWSSACAREAQRRASHESGPSAEYGENLARSTDHSWRDPTIACIGSIHRWQ 456
M+YHQHRQGGGKLYAQ PS GDHASIVSSIAPFDTVCSGGS+ST+SSNARR LDESEVLRCINEYRREHGAPMLRWSSACAREAQRRASHESGPSAEYGENLARSTDHSWRDPTIACIGSIH+WQ
Sbjct: 1 MEYHQHRQGGGKLYAQTPSSGDHASIVSSIAPFDTVCSGGSSSTTSSNARRILDESEVLRCINEYRREHGAPMLRWSSACAREAQRRASHESGPSAEYGENLARSTDHSWRDPTIACIGSIHQWQ 125
BLAST of mRNA_E-siliculosus-1a_F_contig10725.518.1 vs. uniprot
Match: A0A6H5J7K6_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7K6_9PHAE) HSP 1 Score: 160 bits (404), Expect = 2.370e-48 Identity = 79/91 (86.81%), Postives = 79/91 (86.81%), Query Frame = 1 Query: 184 TVCSGGSTSTSSSNARRSLDESEVLRCINEYRREHGAPMLRWSSACAREAQRRASHESGPSAEYGENLARSTDHSWRDPTIACIGSIHRWQ 456
TV SG RRSLDESEVL CINEYRREHGAPMLRWSSACAREAQRRASHESGPSAEYGENLARSTDHSWRDPTIACIGSIHRWQ
Sbjct: 3 TVSSGXXXXXXXXXTRRSLDESEVLCCINEYRREHGAPMLRWSSACAREAQRRASHESGPSAEYGENLARSTDHSWRDPTIACIGSIHRWQ 93 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10725.518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10725.518.1 >prot_E-siliculosus-1a_F_contig10725.518.1 ID=prot_E-siliculosus-1a_F_contig10725.518.1|Name=mRNA_E-siliculosus-1a_F_contig10725.518.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=152bp VNFFTYIALLAHSHPTSLSSSYTAAPTPMDYHQHRQGGGKLYAQAPSGDHback to top mRNA from alignment at E-siliculosus-1a_F_contig10725:1225..1845- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10725.518.1 ID=mRNA_E-siliculosus-1a_F_contig10725.518.1|Name=mRNA_E-siliculosus-1a_F_contig10725.518.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=621bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10725:1225..1845- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10725:1225..1845- >mRNA_E-siliculosus-1a_F_contig10725.518.1 ID=mRNA_E-siliculosus-1a_F_contig10725.518.1|Name=mRNA_E-siliculosus-1a_F_contig10725.518.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=912bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10725:1225..1845- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |