mRNA_E-siliculosus-1a_F_contig10723.517.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10723.517.1 vs. uniprot
Match: A0A6H5KYH6_9PHAE (Vps54_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH6_9PHAE) HSP 1 Score: 172 bits (435), Expect = 2.750e-48 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 Query: 1 GPMRVPQLQRRRSNLSSLEATLELVARVQQSQAAIEGLLAAEDYLGALDILQSAKSTVKNELGKLHSLRNVGRQLKEYEELVSGLLSNRFVAL 279 GPMRVPQLQRRRSNLSSLEATLELVARVQQSQAAIEGLLAAEDYLGALDILQSAKSTVKNELGKLHSLRNVGRQLKEYEELVSGLLSNRFVAL Sbjct: 368 GPMRVPQLQRRRSNLSSLEATLELVARVQQSQAAIEGLLAAEDYLGALDILQSAKSTVKNELGKLHSLRNVGRQLKEYEELVSGLLSNRFVAL 460
BLAST of mRNA_E-siliculosus-1a_F_contig10723.517.1 vs. uniprot
Match: D7G0A0_ECTSI (Vacuolar protein sorting-associated protein 54 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A0_ECTSI) HSP 1 Score: 170 bits (431), Expect = 3.040e-47 Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 1 Query: 1 GPMRVPQLQRRRSNLSSLEATLELVARVQQSQAAIEGLLAAEDYLGALDILQSAKSTVKNELGKLHSLRNVGRQLKEYEELVSGLLSNRFVAL 279 GPMRVPQLQRRR NLSSLEATLELVARVQQSQAAIEGLLAAEDYLGALDILQSAKSTVKNELGKLHSLRNVGRQLKEYEELVSGLLSNRFVAL Sbjct: 283 GPMRVPQLQRRRGNLSSLEATLELVARVQQSQAAIEGLLAAEDYLGALDILQSAKSTVKNELGKLHSLRNVGRQLKEYEELVSGLLSNRFVAL 375
BLAST of mRNA_E-siliculosus-1a_F_contig10723.517.1 vs. uniprot
Match: A0A835YJU9_9STRA (Vacuolar protein sorting-associated protein 54 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJU9_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 3.810e-17 Identity = 41/91 (45.05%), Postives = 65/91 (71.43%), Query Frame = 1 Query: 7 MRVPQLQRRRSNLSSLEATLELVARVQQSQAAIEGLLAAEDYLGALDILQSAKSTVKNELGKLHSLRNVGRQLKEYEELVSGLLSNRFVAL 279 +RVPQL +R+ NL SL+ LELV +++S+ A+E LLAA+DY GALD+L+ A+ + +L +H LR RQ+ EYE+L +L++R +++ Sbjct: 322 IRVPQLAQRQQNLMSLQGYLELVQSIERSKLAVEPLLAADDYSGALDVLEGARRALARDLSDMHCLRAASRQMSEYEDLAFAMLTSRLLSV 412
BLAST of mRNA_E-siliculosus-1a_F_contig10723.517.1 vs. uniprot
Match: A9UVF0_MONBE (Vacuolar protein sorting-associated protein 54 n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UVF0_MONBE) HSP 1 Score: 64.7 bits (156), Expect = 4.150e-10 Identity = 34/86 (39.53%), Postives = 58/86 (67.44%), Query Frame = 1 Query: 22 LQRRRSNLSSLEATLELVARVQQSQAAIEGLLAAEDYLGALDILQSAKSTVKNELGKLHSLRNVGRQLKEYEELVSGLLSNRFVAL 279 L RRR N +L L ++A V SQ+A++ LLAA DY+GAL+++Q+ + + EL +H++R++ QL+E + LVS ++ F+A+ Sbjct: 267 LLRRRRNYGTLIDKLSVLAAVASSQSAVQRLLAASDYVGALELIQTTQEILTAELNGVHAMRHMASQLEEIKALVSRVVETDFLAV 352
BLAST of mRNA_E-siliculosus-1a_F_contig10723.517.1 vs. uniprot
Match: A0A553Q812_9TELE (Vacuolar protein sorting-associated protein 54 n=2 Tax=Danionella translucida TaxID=623744 RepID=A0A553Q812_9TELE) HSP 1 Score: 63.5 bits (153), Expect = 1.050e-9 Identity = 32/85 (37.65%), Postives = 58/85 (68.24%), Query Frame = 1 Query: 4 PMRVPQLQRRRSNLSSLEATLELVARVQQSQAAIEGLLAAEDYLGALDILQSAKSTVKNELGKLHSLRNVGRQLKEYEELVSGLL 258 P+RV + R R+N +L+A L+L+A +QQ+Q ++ LLA ++ GAL+++ ++K ++ EL +HS R++G QL E E L+ ++ Sbjct: 283 PLRVLRDVRSRNNCVALQAKLQLMAALQQTQPTVQLLLAGGEFTGALELISTSKEVLQQELQGIHSFRHLGSQLCEMERLIDKMM 367
BLAST of mRNA_E-siliculosus-1a_F_contig10723.517.1 vs. uniprot
Match: UPI0019C61E13 (vacuolar protein sorting-associated protein 54 n=1 Tax=Silurus meridionalis TaxID=175797 RepID=UPI0019C61E13) HSP 1 Score: 60.5 bits (145), Expect = 1.280e-8 Identity = 30/86 (34.88%), Postives = 55/86 (63.95%), Query Frame = 1 Query: 1 GPMRVPQLQRRRSNLSSLEATLELVARVQQSQAAIEGLLAAEDYLGALDILQSAKSTVKNELGKLHSLRNVGRQLKEYEELVSGLL 258 GP+R + R N +L L+L+A VQQ+Q ++ LL+ +++GAL+++ + K ++ EL +HS R++G QL E E+L+ ++ Sbjct: 277 GPLRALRHAVTRKNCVALHGKLKLMAAVQQTQPTVQLLLSTSEFVGALELINTTKEVLQQELQGIHSFRHLGSQLCEMEKLIDKMM 362
BLAST of mRNA_E-siliculosus-1a_F_contig10723.517.1 vs. uniprot
Match: W5U8J1_ICTPU (Vacuolar protein sorting-associated protein 54 n=7 Tax=Siluroidei TaxID=1489793 RepID=W5U8J1_ICTPU) HSP 1 Score: 60.1 bits (144), Expect = 1.750e-8 Identity = 30/86 (34.88%), Postives = 55/86 (63.95%), Query Frame = 1 Query: 1 GPMRVPQLQRRRSNLSSLEATLELVARVQQSQAAIEGLLAAEDYLGALDILQSAKSTVKNELGKLHSLRNVGRQLKEYEELVSGLL 258 GP+R + R N +L L+L+A VQQ+Q ++ LL+ +++GAL+++ + K ++ EL +HS R++G QL E E+L+ ++ Sbjct: 277 GPLRALRHTVTRRNCVTLHGKLKLMAAVQQTQPTVQLLLSTSEFVGALELINTTKEVLQQELQGIHSFRHLGSQLCEMEKLIDKMM 362
BLAST of mRNA_E-siliculosus-1a_F_contig10723.517.1 vs. uniprot
Match: A0A267GUK0_9PLAT (Vacuolar protein sorting-associated protein 54 n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267GUK0_9PLAT) HSP 1 Score: 53.9 bits (128), Expect = 2.530e-6 Identity = 32/83 (38.55%), Postives = 52/83 (62.65%), Query Frame = 1 Query: 28 RRRSNLSSLEATLELVARVQQSQAAIEGLLAAEDYLGALDILQSAKSTVKNELGKLHSLRNVGRQLKEYEELVSGLLSNRFVA 276 RRR+ +++LE LEL+ V+ +Q I+ LLAA DY GALD++ SA+ + +L LH R++ QL E + V ++ + V+ Sbjct: 253 RRRNCVAALER-LELLLSVRATQPTIQQLLAATDYCGALDLMNSAQEALGQQLRGLHCCRHLHSQLVELRKFVGQMVESELVS 334
BLAST of mRNA_E-siliculosus-1a_F_contig10723.517.1 vs. uniprot
Match: A0A3F2S2L8_9STRA (Vacuolar protein sorting-associated protein 54 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S2L8_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 2.560e-6 Identity = 22/89 (24.72%), Postives = 55/89 (61.80%), Query Frame = 1 Query: 13 VPQLQRRRSNLSSLEATLELVARVQQSQAAIEGLLAAEDYLGALDILQSAKSTVKNELGKLHSLRNVGRQLKEYEELVSGLLSNRFVAL 279 + L +R+ + L + +V V+ +++A+E L+ +DY GAL++++S+++ +++ L +H L ++ + + Y +S +S RF+++ Sbjct: 205 IVNLHQRQKRIKELHDLMAMVEEVKGAESAVEALVQCQDYTGALNLIESSQTILRDHLQGIHGLSSLSEKFRGYRAFISTQISQRFISV 293
BLAST of mRNA_E-siliculosus-1a_F_contig10723.517.1 vs. uniprot
Match: A0A267FK70_9PLAT (Vacuolar protein sorting-associated protein 54 (Fragment) n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267FK70_9PLAT) HSP 1 Score: 53.9 bits (128), Expect = 2.570e-6 Identity = 32/83 (38.55%), Postives = 52/83 (62.65%), Query Frame = 1 Query: 28 RRRSNLSSLEATLELVARVQQSQAAIEGLLAAEDYLGALDILQSAKSTVKNELGKLHSLRNVGRQLKEYEELVSGLLSNRFVA 276 RRR+ +++LE LEL+ V+ +Q I+ LLAA DY GALD++ SA+ + +L LH R++ QL E + V ++ + V+ Sbjct: 326 RRRNCVAALER-LELLLSVRATQPTIQQLLAATDYCGALDLMNSAQEALGQQLRGLHCCRHLHSQLVELRKFVGQMVESELVS 407 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10723.517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 13 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10723.517.1 >prot_E-siliculosus-1a_F_contig10723.517.1 ID=prot_E-siliculosus-1a_F_contig10723.517.1|Name=mRNA_E-siliculosus-1a_F_contig10723.517.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=91bp MRVPQLQRRRSNLSSLEATLELVARVQQSQAAIEGLLAAEDYLGALDILQback to top mRNA from alignment at E-siliculosus-1a_F_contig10723:463..1192+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10723.517.1 ID=mRNA_E-siliculosus-1a_F_contig10723.517.1|Name=mRNA_E-siliculosus-1a_F_contig10723.517.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=730bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10723:463..1192+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10723:463..1192+ >mRNA_E-siliculosus-1a_F_contig10723.517.1 ID=mRNA_E-siliculosus-1a_F_contig10723.517.1|Name=mRNA_E-siliculosus-1a_F_contig10723.517.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=546bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10723:463..1192+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |