mRNA_E-siliculosus-1a_F_contig1072.516.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1072.516.1 vs. uniprot
Match: D8LEG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEG9_ECTSI) HSP 1 Score: 3784 bits (9812), Expect = 0.000e+0 Identity = 2439/2877 (84.78%), Postives = 2475/2877 (86.03%), Query Frame = 1 Query: 1522 MAVEKTLDGVAGGTVSALALIDRFAGTLYRHSRRVKDMEDQVWTMRNRCARLARLARGDTADGGSPSGAAAALAVASGAERSGAPGRPRSEERREEDESWVAAGVQEAAAAMEAGRRRALEQEVESLKNEVLAERRRADAAQLEARDERRLRSLAAPAXXXXXXXXXS-QDYTINCAYKGDEAALRRKLELAAGEIEALRTHTRDLRSQVQSGWWSWRPSSSETGAFNDGCEPLSGGGGGGVEDEELGFLDGLVSSGACPAAEAALREIDATGGXXXXXXXXNDSNISIEVDRLTSLLSEKDAQIGVLTSTVEALQTSPAFAPXXXXXXXXXXXXGGVAAAPGVNVDGAAVGASSPRLRTDQETARTPTSRGSLKLSSFWAADVSGCGVDSGGEGVGVLNHVGAQGLARRCVALTVRLTSALAREGRAERRAERLAAEAGRRDRKIRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALRDAELGADDACQRLASSRAECHALVVELRENRQQHREEVLRLSEAHDAKIKEYGDRLSLNGASLPQPPLGGHGTRGRRRGATATVATSVASSPVAAAIAELAAQWRAFASNGTGDDCENDGNNKXXXXXXXXXXXXXDVTGLSGXXXXXXXXXXXXXXXXX--SKGTVISERQLTATATFLQETAVRLDTECSRAVRRARALEWELAGARRGQLDATTALEEAREEVCRLSARAAVAEASVXXXXXXXXXXXXXPAGKPSYAGHLAESSXXXXXXXXXXXXX---IRFGGDDAGEEASTGTGRWSYYTVAAVSLLEKRFAAAVEDLVAAGAARAAAVAGEAXXNARXDXXXXXXRESLARADLLAADLERHKVSATMEQDGAAAAEWRREIRAELGRWWKDDLLALHSGVVLDWGSAGAADAAXXXXXXXXXXXXXXXXXXXXXXX----FTSGSRYSTNPDAEGGHATASVERIEHGVSGEEAMAQALIAGREEQARLEDRLQLSERRVGKLRGETLRLRATLERWHAEFVAPALQEAQKCRRRLPKPGDAGSAAWEAPQRGPTAAATVAVVDGKSVLERKLLEATAGLLGVREEATGLXXXXXXXXXLVARLREDENDARETAGRRVEAAREASRRRADGDLKDAAERLEEERERFKAQLGAAHAEILRLGAEAAESERRRNLDRERRNRQASAARLSSTIEHCGVGDNGPSGEGSITVDDSGVGRRTAGVGGGGGV-ILEERTGVPTGGRKRPAEGTGRAGGGAGGEEIEREQALRREVEGEREALRRMCNGLAVDLKGAVEARSEATDEREALVQEAARAKAEAKLAGLARENLEAALKELGRLLEFARETAGATRDAPVGQGDDEGRPLHATGLYGWDRSKVEAQRFARVMVAAKVAEADLLRRLQGAASAEAELRHLIRRRDIRIEELKRDLAAYDRLGRSMSGGSGSGGNRHHYQRL-SLRESGSTSSPGNVSGAXXXXXXXADTAARGSQAKAVVRERAAKEVALTAALKHLELELAEASARGEVGDAVTRAAERFALRLFPEAESSGGGGRGAWSSKGYCTACGVTPERARRPVANLADSGRGALFLVPSADVERKAALAASSAALDAAAEAQPEIPAAAAGNSSASANNDAGAVEVSPARSAARTTSADTPTRTAGEGERRNRVSSPPTAAVLGLSSGVQSLEANLARLEAIVAGNGPAGVAESTDGTPDGLGWIRSGSAHRGTVVEAAWAEAVRGLRAQVLDLGHRAEVTEELLEEERAAKGNLDEEVLRLRTELLRQQRSYWQATAKFKESRYERALHEDNEQEGNEEDEPVPLGVAAAAGSHETAVSSGARGTPAHEDEEGTDATGARAQXXXXXXXXXXXXXXXRSSLAEAEERLRDRARELRQVRRLHAREAKEVAAELARVVEAHRARVAILEEKLRRTTRKIKAMARPKPKTAAKRGRESVSGGGGDAGGYRCAFSSGTPLSTDELLNLLAAADEEVFEARFRTQRLEFELRTRTAEVDALLREDGGDIAANPVPTERVGIEGDGDGQSTGKATGLASVACAARLAAAEAEVATLTEEGLAARELAVGAQRESAALKLAAHRRTADRADESRSREKELRRQVSAYRREAERLRSTATAASALAPTAGKNGGPRKXXXXXXXXXXXXXXXXXXXXXXAAALKLRTQQLGVIREESERRGRTIVALRAAKAALGEDLRRLRQEAAGQEEKLARAFRDAGVKGNTVKALREKVTALEAEIVALKSARTNTNATTSGGRVLSAEARGGSLPATDAVTADSPGDAVGAALQPSVPLCDVQTATVRDLRAERDRLRASMRGWHGSLSKKTAEIDAQVAELQRLEAEAGTLRAAVARKDDAYRATKKQASFRLREEYEQFKDSSHRWRADAEAKWRGLRRASEAAVRRAKDSEKSGDAAELELAALKSAFRSFLKTLWDDLRSRPPLAPPAAGAADACPAAPDVVGGHAGRAGIDSSAKASAGQHGSGSGSAPGDGGSAKGAKSWTRKGGDAAAAPTSTGLLPINAAERHKQGDAGQEMFAGLAKATAAMAAAGERGGVEVSPIGRGGRKGGEGAGGSPFGELTEAEVSDIMQALSLSDDQGGXXXXXXXXXXXXXXXXXXXXXXNVPVAXXXXTRTGXXXXXXXXXXXXXX-QEIVDGRVERPTETAPPRPQRDGELEKRGFPDGSGEVGNEKEPNAEHNSTDFEGTTAFADRVESALGGSNTSADLAQVLRSLRASGLSKTVADIAVDDEAIFRSTSLVVPQEPTTLSRSWSQPTSHPAAAAGHPLAPGGRDPDDTVERLSSSRDGTTPALGGPVLLGDRWGGTGRTLSPLEEETSAGSLAETAAFGGLVGDNSEPLLVGDLASPS 10113
MAVEKTLDGVAGGTVSALALIDRFAGTLYR SRRVKDMEDQVWTMRNRCARLARLARGDTADGGSPSGAAAA AV SGA RSG PGR RSEERREEDE WVAAGVQEAAAAMEAGRRR LEQEVESL+NEVLAERRRADAAQLEARDERRLRSLAAPA S Q YTINCA KGDEAALRRKLELAAGEIEALRTHTRDLRSQVQSGWWSWRPSSSE GA NDG EP SGG G V+ EELG LDGLVSSGAC AAEAALREIDATG XXXXXXXX SN+SIEVDRLTSLLSEKDAQIGVLTSTVEALQTSPAFAP GGVAA PGVNVDGAAVGASSPRLRTD+ETARTPTSRGSLKLSSFWAADVSGCGVD GGEGVGVLNHVGAQGLARRCV+L VRLTSALAREGRAERRAERLAAEAGRRDRKIR XXXXXXXXXXXXXXXXXXX ALRDAELGADDACQRLASSRAECHAL VELRENRQQHREEVLRLSEAHDA+IKE DRLSL+GASLPQPPL GHGTRGRRRGATATVA SVASSPVAAAIAELAA WRAF SNG GDD ENDGNN XXXXXXXXXXXXX XXXXXXXXXXXXXXXXX SKGTV+SERQLTATATFLQETAVRLDTECSRAVRRARALEWELAGARRGQLDATTALEEAREEVCRLSARAAVAEASVXXXXXXXXXXXXX KPSYA LAES XXXXXXXXXXXXX IRFGG DAGEEAST TGRWSYYTVAAVSLLEKRFAAAVEDLVAAGAARAAAVAGE XX X XXXXXX E LARADLLAADLERHKVSATMEQDGAAAAEWRREIRAELGRWWKDDLLALH GVVLDWGSAGAADAA XXXXXX FTSGSRYS NPD EG HATAS+ERIEHGVSGEEAMAQALIAGREEQA LEDRLQLSERRVGKLRGETLRLRATLERWH EFVAPALQEAQKCRR LP PGDA AA APQRG TAAATVAVVDGKSVLERKLLEATAGLLGVREEAT L LVARLREDENDARETAGRRVE+AREASRRRADGDLKDAAERLEEERERFKAQLGAAHAEILRLGAEAAESERRRNLD+ERRNRQASAARLSST EH GVGDNGPSGEGSITVDD GVGRRTA ILEERTGVPTGGRKRPAEGTGR AGGEEIERE ALRREVEGEREALRRMCNGLAVDLKGAVEARSEA DEREALVQEAARAKAEAKLAGLARENLE ALKELGRLLEFARETAGATRDAPVG +DE RPLHA GL GWDRSKVEAQRFARVMVAAKVA+ADLLRRLQGAASAEAELRHLIRRRDIRIEELK DLAA DRLGRS SGGS SLRESGSTSSPGNVSGA DT+ RGSQAKAV ER AKEVALTAALKHLELELAEASARGEVGDAVTRAAERFALRLFPEAESSGGGGRGAWSSKGYCTACG+TPERARRPV NL DSGRGALFLVPSAD+ERKAALAASSAALDAAAEAQPE PAA DAGAVE SPARSAARTT GERRNRVSSP TAA LGLSSGVQSLEANLARLEA+VAGNGPAGVAESTDG PDGLGWIRSGSA+ GTVVEAAWAEAVRGLRAQVLDLGHRAEVTEELLEEERAAKGNLDEEVLRLRTELLRQQRS+WQATAK KE RYERALHEDNEQEGNEED XXXXXXXXXXXXXXX ERLR RARELR+VRRLHAR AAELARVVEAHRARVAILEEKLRRTTRKIKAMARPKPKTAAKRGRESVSGGGGDAGGY+CAFSS PLSTDELLNLLAAADEEVFEAR RTQRLEFELRT+TAE DALLREDGG IAANPVPTERVG+EGDGDGQSTG+ATGLASVACAARLAAAEAEVATL EEGLAAREL VGAQRESAALKLAAHR+TADRADESRSREKELRRQVSAY+REAERLRSTATA+SALAPTAGK GGPR XXXXXXXXXXXXXXX AAALKLRTQQLGVIREESERRGRTIVALRAAKAALGEDLRRLRQEAAGQEEKLARAFRDAGVKGNTVKALREKVTALEAEIVALKSARTN N TT GGRVLSAEARGGSLP TDAVTADSPG+AVGAALQPSVPLCDVQTATVRDLRAERDRLRASMRGWHGSLSKKTAEIDAQVAELQRLEAEAGTLRAAVARKDDAYRATKKQ +REEYEQFKDSSHRWR DAEAKWRGLRRASEAAVRRAKDSEKSGDAAELELAALKSAFRSFLKTLWDDLRSRPPLAPPAAGAADACPAAPDVVGG AGR GIDSS KASAGQHGSG GSA GDG S KGAKSWTRK GDAAA ++HKQGDAGQE+FAGLAKATAA+ GSPFGELTEAEVSDIMQALSLSDDQGG XXXXXXXXXXXXXXXXX NVPVA TR G XXXXXX QEI DGRVERPTETAPPRP RDGELEKRGFPDGSG+VGNEKEP EH ST+FEGTTAFADRVESALGGSNTSADLA+VLRSLRASGLSKTVADIAVDDE IFRSTSL VPQEPTTLSRSWSQPTSHPAAAAGHPLAPGGR PDDTVERLSSSRDGT PALGGPVLLGDRWGGTGR LSPLEEETSAGSLAETA FGGLVGDNSEPLLVGDLASPS
Sbjct: 1 MAVEKTLDGVAGGTVSALALIDRFAGTLYRQSRRVKDMEDQVWTMRNRCARLARLARGDTADGGSPSGAAAAPAVVSGAGRSGTPGRLRSEERREEDECWVAAGVQEAAAAMEAGRRRDLEQEVESLRNEVLAERRRADAAQLEARDERRLRSLAAPAGGGDGSSNSSIQGYTINCATKGDEAALRRKLELAAGEIEALRTHTRDLRSQVQSGWWSWRPSSSEAGADNDGSEPSSGGRGR-VKGEELGLLDGLVSSGACAAAEAALREIDATGXXXXXXXXX--SNVSIEVDRLTSLLSEKDAQIGVLTSTVEALQTSPAFAPPPLPPSPRK---GGVAA-PGVNVDGAAVGASSPRLRTDRETARTPTSRGSLKLSSFWAADVSGCGVDDGGEGVGVLNHVGAQGLARRCVSLAVRLTSALAREGRAERRAERLAAEAGRRDRKIRXXXXXXXXXXXXXXXXXXXXXKTAAALGSLRAESAARLREAGEEASQLRRALRDAELGADDACQRLASSRAECHALAVELRENRQQHREEVLRLSEAHDARIKECADRLSLDGASLPQPPLCGHGTRGRRRGATATVAASVASSPVAAAIAELAAHWRAFVSNGMGDDYENDGNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKGTVLSERQLTATATFLQETAVRLDTECSRAVRRARALEWELAGARRGQLDATTALEEAREEVCRLSARAAVAEASVXXXXXXXXXXXXXXXXKPSYADQLAESXXXXXXXXXXXXXXXXXIRFGGGDAGEEASTRTGRWSYYTVAAVSLLEKRFAAAVEDLVAAGAARAAAVAGEXXXXXXXXXXXXXXXEPLARADLLAADLERHKVSATMEQDGAAAAEWRREIRAELGRWWKDDLLALHGGVVLDWGSAGAADAAAVALTRKNKKMPADGIGXXXXXXXXXXFTSGSRYSANPDVEGRHATASIERIEHGVSGEEAMAQALIAGREEQAHLEDRLQLSERRVGKLRGETLRLRATLERWHTEFVAPALQEAQKCRRSLPPPGDARGAALAAPQRGSTAAATVAVVDGKSVLERKLLEATAGLLGVREEATDLRREVASLRALVARLREDENDARETAGRRVESAREASRRRADGDLKDAAERLEEERERFKAQLGAAHAEILRLGAEAAESERRRNLDKERRNRQASAARLSSTGEHGGVGDNGPSGEGSITVDDGGVGRRTAXXXXXXXXXILEERTGVPTGGRKRPAEGTGRXXXXAGGEEIEREWALRREVEGEREALRRMCNGLAVDLKGAVEARSEAKDEREALVQEAARAKAEAKLAGLARENLEVALKELGRLLEFARETAGATRDAPVGLRNDEDRPLHAAGLSGWDRSKVEAQRFARVMVAAKVAQADLLRRLQGAASAEAELRHLIRRRDIRIEELKHDLAASDRLGRSTSGGSXXXXXXXXXXXXXSLRESGSTSSPGNVSGAAAAAVAAGDTSTRGSQAKAVASERVAKEVALTAALKHLELELAEASARGEVGDAVTRAAERFALRLFPEAESSGGGGRGAWSSKGYCTACGLTPERARRPVVNLTDSGRGALFLVPSADIERKAALAASSAALDAAAEAQPETPAAXXXXXXXXXXXDAGAVETSPARSAARTTXXXXXXXXXXXGERRNRVSSPSTAAALGLSSGVQSLEANLARLEAVVAGNGPAGVAESTDGAPDGLGWIRSGSAYGGTVVEAAWAEAVRGLRAQVLDLGHRAEVTEELLEEERAAKGNLDEEVLRLRTELLRQQRSHWQATAKLKE-RYERALHEDNEQEGNEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERLRVRARELREVRRLHARXXXXXAAELARVVEAHRARVAILEEKLRRTTRKIKAMARPKPKTAAKRGRESVSGGGGDAGGYQCAFSSSVPLSTDELLNLLAAADEEVFEARSRTQRLEFELRTKTAEADALLREDGGVIAANPVPTERVGVEGDGDGQSTGEATGLASVACAARLAAAEAEVATLREEGLAARELVVGAQRESAALKLAAHRKTADRADESRSREKELRRQVSAYKREAERLRSTATASSALAPTAGKKGGPRXXXXXXXXXXXXXXXXDAE----AAALKLRTQQLGVIREESERRGRTIVALRAAKAALGEDLRRLRQEAAGQEEKLARAFRDAGVKGNTVKALREKVTALEAEIVALKSARTNANTTTLGGRVLSAEARGGSLPDTDAVTADSPGEAVGAALQPSVPLCDVQTATVRDLRAERDRLRASMRGWHGSLSKKTAEIDAQVAELQRLEAEAGTLRAAVARKDDAYRATKKQL-LSVREEYEQFKDSSHRWREDAEAKWRGLRRASEAAVRRAKDSEKSGDAAELELAALKSAFRSFLKTLWDDLRSRPPLAPPAAGAADACPAAPDVVGGLAGRTGIDSSTKASAGQHGSGGGSASGDGRSGKGAKSWTRKEGDAAA-------------QKHKQGDAGQELFAGLAKATAAIXXXXXXXXXXXXXXXXXXXX--XXXEGSPFGELTEAEVSDIMQALSLSDDQGGSRXXXXXXXXXXXXXXXXXLYLNVPVAATEPTRMGTALLTSQQXXXXXXXQEIADGRVERPTETAPPRPLRDGELEKRGFPDGSGQVGNEKEPYTEHKSTEFEGTTAFADRVESALGGSNTSADLAEVLRSLRASGLSKTVADIAVDDEGIFRSTSLAVPQEPTTLSRSWSQPTSHPAAAAGHPLAPGGRCPDDTVERLSSSRDGTAPALGGPVLLGDRWGGTGRKLSPLEEETSAGSLAETATFGGLVGDNSEPLLVGDLASPS 2849
BLAST of mRNA_E-siliculosus-1a_F_contig1072.516.1 vs. uniprot
Match: D8LEH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH0_ECTSI) HSP 1 Score: 530 bits (1364), Expect = 3.550e-165 Identity = 406/447 (90.83%), Postives = 409/447 (91.50%), Query Frame = 1 Query: 1 MEGRAAATPLGLVDSGSGNAQRLLKKENARLQVIRLRSATAPDNASRTTFTQGEEGRLDAVHPGSRDGRGSASTHPPPLHSEYDACADDEERRGVMGAPRKGPAPEGVATGDLRSEVARLETVALSRKDDALERATAEHREREARLGDRVRALERLQETARRTVLDREERLRNAEAAVAEASVTAXXXXXXXXXMPPSSPPVNAEQGVTGFEAAPTGVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GGKEARRLHRLLEEQGLEVVALRQRVLKAEIVARTRDSGRRDEERWAKEEGKERGGLKGVGVEGSSTKTQKLVESADLAEMEGRVADLHARGDTREALMVAREAVSALKLALIRTEGEVELHAQLLSVCLFNTPHRLYPADARSST 1338
MEGRAAA PLGLVDSGSGN QRLLKKENARLQVIRLRSATAPDNASRTTFT+GEEGR DAVHPGSR GRGS ST P LHSEY ACA+DEERRGV GAPRKGPAPE VATGDL SEVARLETVALSRKDDALERATAEHREREARLGDRVRALERLQETARRTVLDREERLR AEAAVAEA VTAXXXXXXXX P SSPPVNAEQGVTGFEAAP GVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GGKEARRLHRLLEEQGLEVVALRQRVLKAEIVARTRDSGR DEERWAKEE KERGGLKGVGVEGSSTKTQKLVESA LAEMEGRVADLHARGDTREALMVARE VSALKLALIRTEGEVELHAQLLS L R+ AR T
Sbjct: 1 MEGRAAAAPLGLVDSGSGNVQRLLKKENARLQVIRLRSATAPDNASRTTFTEGEEGRRDAVHPGSRGGRGSVSTQSPSLHSEYGACANDEERRGVKGAPRKGPAPEAVATGDLHSEVARLETVALSRKDDALERATAEHREREARLGDRVRALERLQETARRTVLDREERLRKAEAAVAEAPVTAXXXXXXXXTSP-SSPPVNAEQGVTGFEAAPAGVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGAGGKEARRLHRLLEEQGLEVVALRQRVLKAEIVARTRDSGRHDEERWAKEEAKERGGLKGVGVEGSSTKTQKLVESAVLAEMEGRVADLHARGDTREALMVARETVSALKLALIRTEGEVELHAQLLSAVLAEMEGRVADLHARGDT 446 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1072.516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1072.516.1 >prot_E-siliculosus-1a_F_contig1072.516.1 ID=prot_E-siliculosus-1a_F_contig1072.516.1|Name=mRNA_E-siliculosus-1a_F_contig1072.516.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=3372bp MEGRAAATPLGLVDSGSGNAQRLLKKENARLQVIRLRSATAPDNASRTTFback to top mRNA from alignment at E-siliculosus-1a_F_contig1072:16046..32612- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1072.516.1 ID=mRNA_E-siliculosus-1a_F_contig1072.516.1|Name=mRNA_E-siliculosus-1a_F_contig1072.516.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=16567bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1072:16046..32612- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1072:16046..32612- >mRNA_E-siliculosus-1a_F_contig1072.516.1 ID=mRNA_E-siliculosus-1a_F_contig1072.516.1|Name=mRNA_E-siliculosus-1a_F_contig1072.516.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=20232bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1072:16046..32612- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |