mRNA_E-siliculosus-1a_F_contig107.506.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig107.506.1 vs. uniprot
Match: D7FJ07_ECTSI (Similar to LPS-responsive vesicle trafficking, beach and anchor containing isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ07_ECTSI) HSP 1 Score: 513 bits (1320), Expect = 1.630e-165 Identity = 270/286 (94.41%), Postives = 270/286 (94.41%), Query Frame = 1 Query: 1 ILSCGYWDNGVRLHRVNSAGKLSLDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMASALGGTSACGVIPKKGTSSKNSMVCVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRC------------ASIPEASQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAAAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSPXXXXXXXXXXXXEVSIITDARKRMRMLDLALRRAFVG 822 ILSCGYWDNGVRLHRVNS GKL LDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMASALGGTSACGVIPKKGTSSKNSMVCVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRC AS PEASQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATA APTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSPXXXXXXXXXXXXEVSIITDARKRMRMLDLALRRAFVG Sbjct: 1639 ILSCGYWDNGVRLHRVNSGGKLPLDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMASALGGTSACGVIPKKGTSSKNSMVCVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRCGTGSATATDAAEASTPEASQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAVAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSPXXXXXXXXXXXXEVSIITDARKRMRMLDLALRRAFVG 1924
BLAST of mRNA_E-siliculosus-1a_F_contig107.506.1 vs. uniprot
Match: A0A6H5KYR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYR7_9PHAE) HSP 1 Score: 504 bits (1299), Expect = 6.790e-161 Identity = 263/286 (91.96%), Postives = 266/286 (93.01%), Query Frame = 1 Query: 1 ILSCGYWDNGVRLHRVNSAGKLSLDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMASALGGTSACGVIPKKGTSSKNSMVCVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRC------------ASIPEASQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAAAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSPXXXXXXXXXXXXEVSIITDARKRMRMLDLALRRAFVG 822 +LSCGYWDNGVRLHRVNSAGKL LDGSETGGH GAITCLAIAQESSLLVTGG+DATCRVWVVGNAPMASALGG SACGVIPKKGTSSKNSMVCVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRC ASIPEASQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATA APTTINCLLTAGGG YLLAGGQDG+IRVHTLHDLCVLHTIDLQQHGGVTCMRMSP XXXXXXXXXEVSIITDARKRMRMLDLALRRAFVG Sbjct: 2285 LLSCGYWDNGVRLHRVNSAGKLPLDGSETGGHCGAITCLAIAQESSLLVTGGRDATCRVWVVGNAPMASALGGASACGVIPKKGTSSKNSMVCVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRCGTGSPTATDAAEASIPEASQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAVAPTTINCLLTAGGGGYLLAGGQDGVIRVHTLHDLCVLHTIDLQQHGGVTCMRMSPDHEXXXXXXXXXEVSIITDARKRMRMLDLALRRAFVG 2570
BLAST of mRNA_E-siliculosus-1a_F_contig107.506.1 vs. uniprot
Match: B7GC44_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GC44_PHATC) HSP 1 Score: 177 bits (450), Expect = 6.300e-50 Identity = 96/240 (40.00%), Postives = 149/240 (62.08%), Query Frame = 1 Query: 1 ILSCGYWDNGVRLHRVNSAGKLSLDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMASALGGTSACGVIPKKGTSSKNSMVCVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRC----ASIPEASQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAAAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMS 708 ++SCGYWD+GVR+H +++ L + +E GGH G I CLA+AQ+ +L+VTGG+D TCRVWVV ++ +A AL + T ++ + C HVL+GHE PITC+A+ LD V+SG+ +G+I +H L+ G +VR + + P +++A G VVVH+ D+SLH +S+NG RLA+ A + L E+++ GG G + V +L DL + +DL +HG V C+ ++ Sbjct: 102 LVSCGYWDHGVRVHGLDN--NLRVLATEAGGHRGPILCLAVAQDDALMVTGGEDCTCRVWVVDHSDLAVALSDGYVQTALGSANTG-ESVLSCCHVLWGHETPITCVALDSSLDVVISGSREGKICVHTLRRGEFVRFFTPPVSGGTPPAIARVALHPTGTVVVHA-RDQSLHAFSVNGVRLASVNAGEELYDLQFC--NEFVVTGGTRGQVCVRSLSDLQIQSVVDLSRHGPVHCLALT 335
BLAST of mRNA_E-siliculosus-1a_F_contig107.506.1 vs. uniprot
Match: A0A6U2E064_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2E064_9STRA) HSP 1 Score: 175 bits (444), Expect = 8.030e-50 Identity = 102/263 (38.78%), Postives = 144/263 (54.75%), Query Frame = 1 Query: 1 ILSCGYWDNGVRLHRVNSAGKLSLDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMA---------SALGGTSACGVIPKKGTSSKNSMVCVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRCA-------SIPEASQ----------LAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAAAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSP 711 +LSCGYWDN ++ H V L L S GGH GAI CL+I E L+VTGGQDATCRVW V MA +ALGG ++ +S + ++ C H+L+GH+APITCL+ S DLD VVSG+ DG + +H ++ G +VR+ + S PE + LA + HG V H D L Y++N +L A A +N + GGE L+ GG+ + + T+ DL V +DL HG + C++++P Sbjct: 20 LLSCGYWDNTIKAHSVEG---LKLKCSGHGGHRGAINCLSIGDEGGLMVTGGQDATCRVWTVDWHDMAIALTDGYVQTALGGNAS-------SSSKERTLNCCHILWGHDAPITCLSFSSDLDAVVSGSVDGIVCVHTVRRGKFVRKIDTSKFFPDGGSSPEGTNSSNQKKLVRTLALNDHGTFVAHLENDM-LQSYTINAVKLCCADAGEKLNAMEMCSGGEMLVTGGESCHVVIRTVGDLIVRCVLDLSSHGPIRCIKLTP 271
BLAST of mRNA_E-siliculosus-1a_F_contig107.506.1 vs. uniprot
Match: A0A7S2A7N3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A7N3_TRICV) HSP 1 Score: 174 bits (441), Expect = 1.630e-49 Identity = 101/250 (40.40%), Postives = 144/250 (57.60%), Query Frame = 1 Query: 10 CGYWDNGVRLHRVNSAGKLSLDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMASALGGTSACGVIPKKGTSSKNSMV-CVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRC----ASIPEAS-----------QLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAAAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSP 711 CGYWD+ V+ H V+S L L SE GGH GA+ CL+I + L+VTGGQDATCRVWV+ + M+ AL + V GT+ ++S++ C HVL+GH AP+TCL+ S DLD VVSGA DG I +H ++ G ++R+ + + AS +LA + HG V H D L Y++NG +L A A +N + GE L+ GG+ + + TL DL V +DL HG + C+ ++P Sbjct: 1 CGYWDDTVKSHSVDS---LRLKCSENGGHRGAVNCLSIGSDGGLMVTGGQDATCRVWVIDHNDMSIAL---TDGYVQTALGTNDEDSILNCCHVLWGHSAPVTCLSFSSDLDVVVSGAMDGVICVHTVRQGKFIRKIHTGKFFSDVDSASTSSREKEVFVKKLALNDHGRFVAHL-EDGMLQSYTINGVKLGCADAGEKLNAMEICSDGEMLVTGGESCHVVIRTLSDLIVRCVLDLSTHGPIRCISITP 243
BLAST of mRNA_E-siliculosus-1a_F_contig107.506.1 vs. uniprot
Match: A0A7S3PDC4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PDC4_9STRA) HSP 1 Score: 184 bits (467), Expect = 4.010e-49 Identity = 102/243 (41.98%), Postives = 148/243 (60.91%), Query Frame = 1 Query: 1 ILSCGYWDNGVRLHRVNSAGKLSLDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMASALGGTSACGVIPKKGTSSKNSMV--CVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRCASI----PEASQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAAAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSP 711 ++SCGY+D+ V++H S L L SE GGH G I CL+IA + L+VTGGQDATCRVWVV +A MA AL S V G S+ + C HVL+GH+ P+TC+ ++ DLD +VSG+ DG + +H ++ G ++R +R SI P +++A G++VVH +D L+ Y++NG LA A I+ + GEY++ GG D +R+ TL DL V +DL HG + C+ M+P Sbjct: 1138 LVSCGYFDDTVKIHGTES---LDLVASENGGHRGPIRCLSIASDG-LMVTGGQDATCRVWVVNHADMAVAL---SDGYVQTALGASNDGEQLLSCCHVLWGHDTPLTCVDINSDLDVIVSGSEDGLVCVHNIRRGEFIRAFRPPSIGHCKPSVARIALDATGNMVVHM-SDGGLYSYTVNGVELAAINAGEIIHDMKICSDGEYIVTGGDDCQVRIRTLSDLTVRAVLDLTSHGPIRCIAMTP 1372
BLAST of mRNA_E-siliculosus-1a_F_contig107.506.1 vs. uniprot
Match: A0A7S1UNE3_9STRA (Hypothetical protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UNE3_9STRA) HSP 1 Score: 177 bits (448), Expect = 1.300e-46 Identity = 97/244 (39.75%), Postives = 143/244 (58.61%), Query Frame = 1 Query: 1 ILSCGYWDNGVRLHRVNSAGKLSLDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMASALGG---TSACGVIPKKGTSSKNSMVCVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYR----CASIPEASQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAAAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSP 711 I+SCGYWD+ V++H V+ L L S+TGGH G + CLA+ + +L+VTGG DATCRVWVV + MA AL +A G + + ++C H+L+GH APITC+++S DLD VVSG+ DG + +H ++ G YVR R +I A ++ GD V + D +LH Y++N LA+ A +N +L G L+ GG+ G I ++ DL VL +DL + G + C+ +P Sbjct: 805 IVSCGYWDDTVKVHSVDG---LKLTCSDTGGHRGPVRCLALGDDGALMVTGGNDATCRVWVVDHPDMAVALSDGYVKTALG----EALDREKQLICCHILWGHVAPITCVSLSSDLDVVVSGSLDGAVCVHTVRRGTYVRTIRPLNRTNAINAARKITLHGTGDFCV-AMEDHTLHSYTVNDVHLASTDAGEALNDMLITSFGSVLVTGGELGWIVCRSVRDLLVLSVLDLSRQGPIRCLSTTP 1040
BLAST of mRNA_E-siliculosus-1a_F_contig107.506.1 vs. uniprot
Match: A0A7S2SAH4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SAH4_9STRA) HSP 1 Score: 168 bits (425), Expect = 6.090e-46 Identity = 98/250 (39.20%), Postives = 144/250 (57.60%), Query Frame = 1 Query: 1 ILSCGYWDNGVRLHRVNSAGKLSLDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMASALGGTSACGVIPKKGTSSKNSMV-CVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQ---YRCASIPEA---------SQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAAAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSP 711 LSCGY+DN V+LH + L L +E GGH GAI CL+I + L+VTGGQDATCRVW++ +A MA+AL + KK +K S++ C VL+GHEA ++CL+ S DLD VVSG+ +G I +H + G ++R + I +A +LA + HG V H + SL Y++NG +L A A +N + GG+ L+ GG+ + + TL DL V +DL++ G + C+ +P Sbjct: 104 FLSCGYYDNTVKLHTFDG---LRLKCAENGGHRGAINCLSIGDDGGLMVTGGQDATCRVWIIDHADMATALTDGYVQTALGKKDNDAKESILNCCQVLWGHEAAVSCLSFSSDLDIVVSGSVNGVICVHTARRGSFIRSIWVHDFLKIAKAYGNNKGTAIRKLALNDHGTFVAHL-ENYSLLMYTVNGVKLGLADAGEKLNAMEIVPGGDLLVTGGERCQVVIRTLRDLGVRCIVDLKKQGPIRCISCTP 349
BLAST of mRNA_E-siliculosus-1a_F_contig107.506.1 vs. uniprot
Match: A0A7S4NG05_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NG05_9STRA) HSP 1 Score: 173 bits (439), Expect = 2.370e-45 Identity = 97/252 (38.49%), Postives = 140/252 (55.56%), Query Frame = 1 Query: 1 ILSCGYWDNGVRLHRVNSAGKLSLDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMASALGGTSACGVIPKKGTSSKN-SMVCVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRCASI--------PEAS------QLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAAAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSP 711 +LSCGYWDN ++ H V L L SE+GGH GAI C+++ E L++TGG DATCRVW V MA AL + G SK ++ C H+L+GH++PITCL+ S DLD VVSGA +G + +H ++ G +VR+ + P S +LA + HG V H D L Y++N +L A A +N + GGE L+ GG+ + + T+ DL V +DL HG + C++++P Sbjct: 2025 LLSCGYWDNAIKAHTVEG---LKLKCSESGGHSGAINCMSVGDEGGLMITGGHDATCRVWTVDWHDMAIALTDGYVQTALGANGRGSKEKNLNCCHILWGHDSPITCLSFSSDLDIVVSGAVNGIVCVHSVRRGKFVRKIDTSDFFLGNSSANPGRSHKTIVRKLALNDHGTFVAHL-EDGMLQCYTINSVKLCCADAGEKLNAMEICSGGEMLVTGGESCHVVIRTVGDLMVRCVLDLSSHGPIRCIKLTP 2272
BLAST of mRNA_E-siliculosus-1a_F_contig107.506.1 vs. uniprot
Match: A0A7S1D922_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D922_CYCTE) HSP 1 Score: 164 bits (415), Expect = 2.430e-45 Identity = 89/246 (36.18%), Postives = 137/246 (55.69%), Query Frame = 1 Query: 1 ILSCGYWDNGVRLHRVNSAGKLSLDGSETGGHYGAITCLAIAQESSLLVTGGQDATCRVWVVGNAPMASALGGTSACGVIPKKGTSSKNSMVCVHVLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRCA---------SIPEASQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLATAAAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSP 711 ++SCGYWD+ V++H ++ + L S +GGH G I CL++ +L+VTGGQDATCRVWV+ + MA AL + + + + C HVL+GHE+P++ + +S DLD VVSG+ DG + +H + G ++R R S P ++A G VVH D SLH ++NG L + A T+N + GE L+ GG + V T+ DL V +D+ +HG + C+ ++P Sbjct: 39 LVSCGYWDDTVKIHSIDGSRILC---SHSGGHRGPIRCLSVGSCGALMVTGGQDATCRVWVIYHPDMAVALSDGYVQTALGES-NDGEQRLTCCHVLWGHESPVSSVDLSSDLDVVVSGSLDGIVCVHSARRGKFIRSMRPRKPGHKRANLSSPAVRKIALDSSGIFVVHL-DDGSLHSCTINGANLCSVNAQETLNAMRITSNGEMLVTGGDKCQVVVRTVKDLRVCSMLDITRHGPIRCIALTP 279 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig107.506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig107.506.1 >prot_E-siliculosus-1a_F_contig107.506.1 ID=prot_E-siliculosus-1a_F_contig107.506.1|Name=mRNA_E-siliculosus-1a_F_contig107.506.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=275bp ILSCGYWDNGVRLHRVNSAGKLSLDGSETGGHYGAITCLAIAQESSLLVTback to top mRNA from alignment at E-siliculosus-1a_F_contig107:82579..83701- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig107.506.1 ID=mRNA_E-siliculosus-1a_F_contig107.506.1|Name=mRNA_E-siliculosus-1a_F_contig107.506.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1123bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:82579..83701- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig107:82579..83701- >mRNA_E-siliculosus-1a_F_contig107.506.1 ID=mRNA_E-siliculosus-1a_F_contig107.506.1|Name=mRNA_E-siliculosus-1a_F_contig107.506.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1650bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:82579..83701- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |