mRNA_E-siliculosus-1a_F_contig107.503.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig107.503.1 vs. uniprot
Match: D7FJ04_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ04_ECTSI) HSP 1 Score: 775 bits (2002), Expect = 4.730e-277 Identity = 418/452 (92.48%), Postives = 421/452 (93.14%), Query Frame = 1 Query: 166 MVLGHHIEPVVSLLLAADNDPSLRCGSSLGQTQRQLCERAHITLGDLAQQAPDVIGAASDLADSAQASVGESLGAIGNVWDSIVDTVTSAKDQATDTTLGSVDALKSQVDELSANALSPFQRLGEDISNSLSGQLDSLKIGAQGAVGEAQTQFGQSVAENIGNPVQEGLGQVFSKFGTSPEELLKEEQTLTNGVQQAIKGVERVAPPSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITNLEGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTSVVKPGVRDIMQQQPAKPSPKTSPSGTPSSTLGREAKELITKATREAEEILQQARSTGAAQAASLLEEAETEALLILKGAEVEKEALLLRANKTEPNTEAETGPAGSEAK 1521
MVLGHHIEPVVSLLLAADNDPSL TLGDLAQQAPDVIGAASDLADSAQASVGESLGAIGNVWDSIVDTVTSAKDQATDTTLGSVDALK QVDELSANALSPFQRLGEDISNSLSGQLDSLKIGAQGAVGEAQTQFGQSVAENIGNPVQEG+GQVFSKFGTSPEELLKEEQTLTNGVQQAIKGVERVAPPSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITNL GLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTSVVKPGVRDIMQQQP +PSPKT SGTPSSTL REAKELITKA RE LQQARSTGAAQAASLLEEAETEALLILKGAEVEKEALLLRANKTEP+TEAET PAGSEAK
Sbjct: 1 MVLGHHIEPVVSLLLAADNDPSLS------------------TLGDLAQQAPDVIGAASDLADSAQASVGESLGAIGNVWDSIVDTVTSAKDQATDTTLGSVDALKYQVDELSANALSPFQRLGEDISNSLSGQLDSLKIGAQGAVGEAQTQFGQSVAENIGNPVQEGMGQVFSKFGTSPEELLKEEQTLTNGVQQAIKGVERVAPPSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTSVVKPGVRDIMQQQPTEPSPKTPSSGTPSSTLRREAKELITKAKREXXXXLQQARSTGAAQAASLLEEAETEALLILKGAEVEKEALLLRANKTEPSTEAETRPAGSEAK 434
BLAST of mRNA_E-siliculosus-1a_F_contig107.503.1 vs. uniprot
Match: A0A835YXE1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXE1_9STRA) HSP 1 Score: 198 bits (503), Expect = 1.150e-52 Identity = 88/160 (55.00%), Postives = 113/160 (70.62%), Query Frame = 1 Query: 745 VQQAIKGVERVAPPSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITNLEGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTSVVKPGVRDIM 1224
+Q + E+VA P F AEN +LPLW GM+ P +KIM Y ++LAAL+Y WLTYE QNPVSL GF+ G +L+ LTKGF +EVSVA W+HF+A+DLF+GRWVYLD +RN ++ HSL LCYLFGP G LSHLLTRG++ + + V DI+
Sbjct: 151 LQHIVTIAEKVATPKRTFLAENILVLPLWGGMIFAPNNKYVQKIMEGYSVIILAALVYAWLTYEALQNPVSLAGFSGGAFDLDTLTKGFTQEVSVADGWAHFIAQDLFVGRWVYLDSKRNSVWAAHSLALCYLFGPIGVLSHLLTRGLSGIFRQDVTDIL 310
BLAST of mRNA_E-siliculosus-1a_F_contig107.503.1 vs. uniprot
Match: A0A7S3Y5E5_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5E5_HETAK) HSP 1 Score: 184 bits (466), Expect = 8.100e-47 Identity = 84/169 (49.70%), Postives = 117/169 (69.23%), Query Frame = 1 Query: 766 VERVAPPSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITNLEGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTSVVKPGVRDIMQQQPAKPSPKTSPSGT 1272
+E P+T+F +N A LPLW+ M+ +P+ +TK +M SY P+ +++Y+W Y FQ+P +LQGF+ IT+L LTKGFG EV+VATAW+HF+A+DLF+GR++YLDG +N +FT+HS+ L YLFGPAG LSHL+TRG ++ PG I A PK P T
Sbjct: 280 LETKLTPNTVFTIDNVASLPLWLAMIGFPQNGVTKGLMKSYLPISAFSMLYVWSAYLAFQDPQALQGFSEAITSLPALTKGFGSEVAVATAWAHFIAQDLFVGRFIYLDGLKNGVFTRHSVALAYLFGPAGLLSHLVTRGFVGLLNPGQDIIEAGMSASTIPKPMPQPT 448
BLAST of mRNA_E-siliculosus-1a_F_contig107.503.1 vs. uniprot
Match: W7U388_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U388_9STRA) HSP 1 Score: 178 bits (452), Expect = 8.040e-45 Identity = 100/245 (40.82%), Postives = 142/245 (57.96%), Query Frame = 1 Query: 532 LGEDISNSLSGQLDSLKIGAQGAVGEAQTQFGQSVAENIGN---PVQEGLGQ----------VFSKFGT-SPEELLKEEQTLTNGVQQAIKGVERVAPPSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITNLEGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTSVVKPGVRDIM 1224
LG +I LS +LK VG + G + E G+ P Q L Q V S+F + +EL K+ +TL+ A++ ++ V P LF AEN ILP W +++ P K +++SY P+++AAL Y W Y FQ+P +L+GFAS I++L L+KG G E ATAW+HF+A+DLF+GRW++LDG RN ++T HSL L +LFGP G LSHLLTR + + + DIM
Sbjct: 184 LGAEIKTELS----ALKSQVGEIVGSRLSGLGSAFTEKAGDVLIPYQPFLEQTKRQLGDKFSVVSQFAEQATQELSKDAETLS----PALRALKTVGTPRNLFNAENIVILPFWASVILAPSNTFVKTLVSSYLPVLVAALAYTWSAYLAFQDPAALEGFAS-ISDLSALSKGLGTEAGTATAWAHFIAQDLFVGRWIFLDGIRNGVWTAHSLTLAFLFGPTGILSHLLTRSFVKIFRWDIADIM 419
BLAST of mRNA_E-siliculosus-1a_F_contig107.503.1 vs. uniprot
Match: A0A7S0KR27_MICPS (Hypothetical protein n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0KR27_MICPS) HSP 1 Score: 164 bits (416), Expect = 4.870e-43 Identity = 68/147 (46.26%), Postives = 101/147 (68.71%), Query Frame = 1 Query: 763 GVERVAPPSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITNLEGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTSVVK 1203
G+E + P T+F ENAAI P W+GM+ +P+ +T+ +M SY +L +Y++LTY F +P ++ F++G +L L+KGF E +A W+HF+A DLF+GRW+YLD ++N +F HSL+LC FGP G +SH LTRGVTS+ +
Sbjct: 55 GLEWIPTPETVFDVENAAIFPFWLGMIAFPKNKVTETVMGSYAVPILLGFVYIYLTYYSFSDPRIIEAFSTGKPDLAALSKGFSYEWCMAVGWAHFIAMDLFVGRWIYLDARKNDVFAAHSLLLCLFFGPTGVISHTLTRGVTSLAR 201
BLAST of mRNA_E-siliculosus-1a_F_contig107.503.1 vs. uniprot
Match: A0A7S3Y5F1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5F1_HETAK) HSP 1 Score: 162 bits (411), Expect = 1.230e-42 Identity = 74/145 (51.03%), Postives = 102/145 (70.34%), Query Frame = 1 Query: 838 MVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITNLEGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTSVVKPGVRDIMQQQPAKPSPKTSPSGT 1272
M+ +P+ +TK +M SY P+ +++Y+W Y FQ+P +LQGF+ IT+L LTKGFG EV+VATAW+HF+A+DLF+GR++YLDG +N +FT+HS+ L YLFGPAG LSHL+TRG ++ PG I A PK P T
Sbjct: 1 MIGFPQNGVTKGLMKSYLPISAFSMLYVWSAYLAFQDPQALQGFSEAITSLPALTKGFGSEVAVATAWAHFIAQDLFVGRFIYLDGLKNGVFTRHSVALAYLFGPAGLLSHLVTRGFVGLLNPGQDIIEAGMSASTIPKPMPQPT 145
BLAST of mRNA_E-siliculosus-1a_F_contig107.503.1 vs. uniprot
Match: C1N0R2_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N0R2_MICPC) HSP 1 Score: 140 bits (352), Expect = 2.740e-35 Identity = 60/134 (44.78%), Postives = 87/134 (64.93%), Query Frame = 1 Query: 790 TLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITNLEGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVT 1191
T+F EN AI PLW+GM+ P+ +T+ +M+S + +Y++LT+ F +P L F++G +L L KGF E VA W+HF+A DLF GRW+YLD ++N +F HSL+LC FGP G +SH+ TR +T
Sbjct: 2 TVFNVENVAIFPLWLGMIFAPKSGVTRAVMDSALVPCVCGFVYVYLTWYSFHDPRILDAFSTGKPDLAALAKGFSYEWCVAVGWAHFIAMDLFAGRWIYLDARKNDVFAAHSLLLCLFFGPTGAISHVTTRAIT 135
BLAST of mRNA_E-siliculosus-1a_F_contig107.503.1 vs. uniprot
Match: A0A0G4GWJ9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GWJ9_VITBC) HSP 1 Score: 140 bits (354), Expect = 4.870e-34 Identity = 64/135 (47.41%), Postives = 86/135 (63.70%), Query Frame = 1 Query: 784 PSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITNLEGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGV 1188
PS +F A NA +LP W MV+ P +T+K+M S P ++ L+Y+WL P +++G G L LTK F E VAT W HFLAEDLF+GRWVYLDG++N + +HS +L LFGP G +SHL+TR +
Sbjct: 97 PSAVFTASNAFVLPFWALMVIAPGAQVTEKLMRSVTPFIVLGLLYLWLAVISSTFPEAVEGLGQGAGQLPVLTKAFSLEPVVATGWVHFLAEDLFVGRWVYLDGRKNDVPIRHSCLLSLLFGPLGVVSHLVTRDI 231
BLAST of mRNA_E-siliculosus-1a_F_contig107.503.1 vs. uniprot
Match: UPI001F29C295 (DUF4281 domain-containing protein n=1 Tax=Tychonema sp. BBK16 TaxID=2699888 RepID=UPI001F29C295) HSP 1 Score: 125 bits (315), Expect = 5.150e-30 Identity = 60/138 (43.48%), Postives = 87/138 (63.04%), Query Frame = 1 Query: 784 PSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITN--LEGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVT 1191
P +F N +LP W M++ P +T+K+MNS+ P VL AL+Y++L F + ++ + A+ ++N L + K GEE + AT W HFL DLF+GRW+YL+GQR ++T HSL LC GP G LSH+LT +T
Sbjct: 3 PELIFTVGNLFVLPFWAIMILLPNWGITRKVMNSFIPFVLLALMYIYL----FASSITPEN-AAALSNPKLADIAKFLGEETAAATGWIHFLVMDLFVGRWIYLEGQRTGVWTIHSLALCLFAGPIGLLSHILTHWIT 135
BLAST of mRNA_E-siliculosus-1a_F_contig107.503.1 vs. uniprot
Match: UPI0018812FA2 (ABA4-like family protein n=4 Tax=Microcoleaceae TaxID=1892252 RepID=UPI0018812FA2) HSP 1 Score: 125 bits (313), Expect = 1.120e-29 Identity = 59/139 (42.45%), Postives = 89/139 (64.03%), Query Frame = 1 Query: 784 PSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITN--LEGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTS 1194
P +F A N +LP W M++ P +T+K+MNS+ P V+ AL+Y++L F + ++ + A+ ++N L + K GEE + AT W HFL DLF+GRW+YL+GQR ++T HSL LC GP G LSH++T +T+
Sbjct: 3 PELIFDAGNLFVLPFWAIMILLPNWGITRKVMNSFIPFVVLALLYIYL----FGSSLTAEN-AAALSNPKLADIAKFLGEETAAATGWIHFLVMDLFVGRWIYLEGQRTGVWTVHSLALCLFAGPMGLLSHIVTAWITA 136 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig107.503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig107.503.1 >prot_E-siliculosus-1a_F_contig107.503.1 ID=prot_E-siliculosus-1a_F_contig107.503.1|Name=mRNA_E-siliculosus-1a_F_contig107.503.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=540bp MTGSSTLFVVSSVAILARDCNSLLVHPHLSDSRLSTSAATSYSSSSSSSGback to top mRNA from alignment at E-siliculosus-1a_F_contig107:64482..69778- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig107.503.1 ID=mRNA_E-siliculosus-1a_F_contig107.503.1|Name=mRNA_E-siliculosus-1a_F_contig107.503.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5297bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:64482..69778- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig107:64482..69778- >mRNA_E-siliculosus-1a_F_contig107.503.1 ID=mRNA_E-siliculosus-1a_F_contig107.503.1|Name=mRNA_E-siliculosus-1a_F_contig107.503.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3240bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:64482..69778- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |