mRNA_E-siliculosus-1a_F_contig107.502.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig107.502.1 vs. uniprot
Match: D7FJ03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ03_ECTSI) HSP 1 Score: 175 bits (443), Expect = 3.800e-52 Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 2 Query: 62 MSFPYHCDVEVTFPSASLAAIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDDGGLGQAGR 334
MSFPYHCD EVTFPSASLA IACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDDGGLG+AGR
Sbjct: 1 MSFPYHCDAEVTFPSASLATIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDDGGLGEAGR 91
BLAST of mRNA_E-siliculosus-1a_F_contig107.502.1 vs. uniprot
Match: K3WQ75_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ75_GLOUD) HSP 1 Score: 96.7 bits (239), Expect = 8.860e-22 Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 2 Query: 71 PYHCDVEVTFPSASLAAIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDD 310
PY CD+ + FP A AA A TL VDAELQP+KI RTL VEG++L+ FEATE R LR +S FYDM +VART LEF +
Sbjct: 6 PYECDISLAFPEAVDAAYALETLRVDAELQPDKITRTLAVEGTNLVVHFEATEIRLLRAAVSSFYDMGLLVARTLLEFKE 85
BLAST of mRNA_E-siliculosus-1a_F_contig107.502.1 vs. uniprot
Match: A0A2D4BZ60_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZ60_PYTIN) HSP 1 Score: 91.7 bits (226), Expect = 7.220e-20 Identity = 46/84 (54.76%), Postives = 56/84 (66.67%), Query Frame = 2 Query: 59 TMSFPYHCDVEVTFPSASLAAIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDD 310
T + PY C++ ++FP A A A T+ VD ELQP KI RTL V GS L+ FEATE R LR +S FYDMA +V+RT LEF D
Sbjct: 2 TATHPYECEIALSFPEAEDAQHAMMTIQVDEELQPEKIHRTLSVNGSDLIVHFEATEIRLLRAAVSSFYDMALLVSRTLLEFKD 85
BLAST of mRNA_E-siliculosus-1a_F_contig107.502.1 vs. uniprot
Match: A0A5D6XF77_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XF77_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 3.750e-19 Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 2 Query: 71 PYHCDVEVTFPSASLAAIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDD 310
P+ CDV++ FP+ A A TL VD E+QP+KI RTL V+G++L A FEATE R LR ++ FYDMA +VART LEF +
Sbjct: 6 PFECDVQLVFPAPLDAQYALETLQVDGEIQPDKIHRTLAVDGAALTAHFEATEIRLLRAAVASFYDMALLVARTLLEFKE 85
BLAST of mRNA_E-siliculosus-1a_F_contig107.502.1 vs. uniprot
Match: A0A835YW33_9STRA (Transcription factor Pcc1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW33_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 2.630e-18 Identity = 44/82 (53.66%), Postives = 62/82 (75.61%), Query Frame = 2 Query: 71 PYHCDVEVTFPSASLAAIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDDGG 316
PY C +E+ +PS + AAIA ++ VD ELQPNK+ RTL ++G+ L+A+F ATEA+ LRV +S F D A++V+RT LEFD+ G
Sbjct: 5 PYVCKLELRYPSEATAAIAKASMEVDEELQPNKVSRTLELDGNKLMAQFAATEAKVLRVSVSTFCDTAALVSRTMLEFDETG 86
BLAST of mRNA_E-siliculosus-1a_F_contig107.502.1 vs. uniprot
Match: A0A8K1CRT8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRT8_PYTOL) HSP 1 Score: 87.4 bits (215), Expect = 2.870e-18 Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 2 Query: 71 PYHCDVEVTFPSASLAAIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDD 310
PY CD+ ++FP A A A T+ VD ELQP+KI R+L V+G+ L+ FEATE R LR ++ FYDM+ +VART LEF +
Sbjct: 7 PYECDIRLSFPEAEDAEHAMLTIQVDEELQPDKIHRSLSVDGTDLIVHFEATEIRLLRAAVASFYDMSLLVARTLLEFKE 86
BLAST of mRNA_E-siliculosus-1a_F_contig107.502.1 vs. uniprot
Match: A0A024TZ00_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TZ00_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 3.570e-16 Identity = 42/80 (52.50%), Postives = 50/80 (62.50%), Query Frame = 2 Query: 71 PYHCDVEVTFPSASLAAIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDD 310
PY C++ +TF S AA A TL VD E+ P+KI + LRV+ L+A F A E R LR S FYDMA VV R LEFDD
Sbjct: 6 PYDCEIVLTFGSTDAAAHALATLNVDEEISPDKITKELRVQDKKLIAHFWANEIRMLRAAASSFYDMALVVTRVLLEFDD 85
BLAST of mRNA_E-siliculosus-1a_F_contig107.502.1 vs. uniprot
Match: A0A6G0X3D3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3D3_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.350e-15 Identity = 41/80 (51.25%), Postives = 51/80 (63.75%), Query Frame = 2 Query: 71 PYHCDVEVTFPSASLAAIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDD 310
PY C++ +TF SA AA A TL+VD E+ P+KI + L V+ + L+A A E R LR S FYDMA VV R LEFDD
Sbjct: 6 PYECEIVLTFGSADAAANALATLSVDEEISPDKITKELTVQDNRLIAHIWANEIRMLRAAASSFYDMALVVTRVLLEFDD 85
BLAST of mRNA_E-siliculosus-1a_F_contig107.502.1 vs. uniprot
Match: A0A3R7ZLV6_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7ZLV6_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 1.190e-14 Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 2 Query: 83 DVEVTFPSASLAAIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDD 310
++ +TF S+ A A TL VDAE+ P+KI + LRV+G+ L+A F A E R LR S FYDMA VV R LEFDD
Sbjct: 8 EIVLTFGSSDAAVHALATLNVDAEISPDKITKELRVQGNQLIAHFWANEIRMLRAAASSFYDMALVVTRVLLEFDD 83
BLAST of mRNA_E-siliculosus-1a_F_contig107.502.1 vs. uniprot
Match: A0A484E6M7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E6M7_BRELC) HSP 1 Score: 77.4 bits (189), Expect = 1.940e-14 Identity = 43/86 (50.00%), Postives = 52/86 (60.47%), Query Frame = 2 Query: 47 SNCETMSFPYHCDVEVTFPSASLAAIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEF 304
SN T+ P+ C + + F A RTL VD ELQP KIIRTL V+G+ LL ATE R LR +S FYDM+ + ART LEF
Sbjct: 9 SNSATL--PFECKMTLRFTDKLDALYVLRTLEVDEELQPKKIIRTLTVKGTELLVHIAATEIRLLRAAVSSFYDMSMLSARTLLEF 92 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig107.502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig107.502.1 >prot_E-siliculosus-1a_F_contig107.502.1 ID=prot_E-siliculosus-1a_F_contig107.502.1|Name=mRNA_E-siliculosus-1a_F_contig107.502.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=92bp MSFPYHCDVEVTFPSASLAAIACRTLAVDAELQPNKIIRTLRVEGSSLLAback to top mRNA from alignment at E-siliculosus-1a_F_contig107:61965..63986- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig107.502.1 ID=mRNA_E-siliculosus-1a_F_contig107.502.1|Name=mRNA_E-siliculosus-1a_F_contig107.502.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2022bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:61965..63986- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig107:61965..63986- >mRNA_E-siliculosus-1a_F_contig107.502.1 ID=mRNA_E-siliculosus-1a_F_contig107.502.1|Name=mRNA_E-siliculosus-1a_F_contig107.502.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:61965..63986- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |