mRNA_E-siliculosus-1a_F_contig107.501.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig107.501.1 vs. uniprot
Match: D7FJ02_ECTSI (CTP_transf_like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ02_ECTSI) HSP 1 Score: 851 bits (2198), Expect = 2.220e-305 Identity = 435/462 (94.16%), Postives = 443/462 (95.89%), Query Frame = 1 Query: 1 MMSNPPSCGRQMEVDRGNDDARRWKRVRTLESSLGYSNLAFQGDRRKFSQDVHGAVNPKLPTNGFESANHHRKRRLPSVGRSPSVQGSTPPR-EFGVSRSVPALLPSEEQSTPSWEQPAAILGRGNLPQLPGTRQEAQSNRSLKGPQESSMVETTG--VVRKPSMDSSLSWKEEQKGQPSRGFLQHAERTVLSPERSSRSHRSQAFSPLQASVPSGPECGDNRDVDSKGDVGMTPCVMLEAAEGTSRKSFGALSKDLPRNRDILPDNFENRDTRRLVVKSWPSGKKLRTVRAGRCRSLVSPNNPFTSNAVVARVKQGFKNGEDETRSKVLIVGSGTFNPVHKIHIRRFYLARNYLEMQKGASMRVVGGIVSPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVGKGSWLAVDSWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQIHHLNP 1377 MMSNPP+ GRQMEVDRGNDDARRWKRVRTLESSLGYSNLAF+GDR+KFSQDVHG VNPKLPT+GFESANHHRKRRLPSVGRSPSVQGSTPPR EFGVSRSVPALLPSEEQSTPSWEQPAA+LGRGNLPQLPGTRQE QSNRSLKGPQESSMVETTG VVRKPSMDSSLSWKEE GQPSRGFLQHAERTVLSPERSSRSHRS+ FSPLQASVPSGPECGDNRDVDS GDVGMTPCVM EAAEGTS KSFGALSKDLPRNRDILPDNFENRD+RRLVVKS PSGKKLRTVRAGRCRSLVSPNNPFTSNAVVARVKQGFKNGEDETRSKVLIVGSGTFNPVHKIHIRRFYLARNYLEMQKG MRVVGGIVSPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVGKGSWLAVDSWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQ+ P Sbjct: 1 MMSNPPASGRQMEVDRGNDDARRWKRVRTLESSLGYSNLAFEGDRKKFSQDVHGVVNPKLPTDGFESANHHRKRRLPSVGRSPSVQGSTPPRREFGVSRSVPALLPSEEQSTPSWEQPAAVLGRGNLPQLPGTRQEEQSNRSLKGPQESSMVETTGSGVVRKPSMDSSLSWKEELMGQPSRGFLQHAERTVLSPERSSRSHRSRVFSPLQASVPSGPECGDNRDVDSNGDVGMTPCVMFEAAEGTSSKSFGALSKDLPRNRDILPDNFENRDSRRLVVKSVPSGKKLRTVRAGRCRSLVSPNNPFTSNAVVARVKQGFKNGEDETRSKVLIVGSGTFNPVHKIHIRRFYLARNYLEMQKG--MRVVGGIVSPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVGKGSWLAVDSWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQVMGFPP 460
BLAST of mRNA_E-siliculosus-1a_F_contig107.501.1 vs. uniprot
Match: A0A6U0UYK4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0UYK4_9STRA) HSP 1 Score: 234 bits (596), Expect = 1.110e-65 Identity = 123/266 (46.24%), Postives = 177/266 (66.54%), Query Frame = 1 Query: 946 KNGEDETRSKVLIVGSGTFNPVHKIHIRRFYLARNYLEMQKGASMRVVGGIVSPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVGKGSWLAVDSWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQIHHLNPAMLRAGGFGVITVCRPLEKERLLKELSP-------SFRNIAILVEDATILSAELEKTSSNMVRHLLKQGKSVEGMVGKAVARYIRDNTIAERISGRQKWTVEDNAFMFDQEDKDDRPYHNLP 1722 + + + ++VL+V SG +NP+HK+H+R YLAR +LE + G +RV+GGI+SPSH TLVRQ+ R EIIPP+HRL+MAR VG WL+VD+WE+TR+RIMDY+SVL H +EV T+PG I I+Y+ + + L+P LR GFG + VCRP+E ERLL++++ + +A +VEDA +L+ ELE+T+S+ VR L GKSVE MVG +VA Y R + I ++++G +W E+ + +ED RPY P Sbjct: 148 RKAQAQAPTRVLLVASGAYNPIHKLHLRMLYLAREFLEQRAG--LRVLGGIISPSHATLVRQQQRRTVKEIIPPRHRLNMARLLVGDSLWLSVDAWEITRRRIMDYLSVLHHVREVAERTWPG--VPIRIVYLTKPYGMLKLSPRALREHGFGCLCVCRPVESERLLRQMAVYDSLEKNPWEGVAHVVEDAAMLTHELERTTSSAVRSDLMAGKSVEAMVGPSVAAYARKHAIGDKMAGGAQWQPEEKEVQWCEEDGV-RPYRTEP 408
BLAST of mRNA_E-siliculosus-1a_F_contig107.501.1 vs. uniprot
Match: A0A7S2B1H5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B1H5_9STRA) HSP 1 Score: 233 bits (594), Expect = 9.990e-63 Identity = 121/267 (45.32%), Postives = 171/267 (64.04%), Query Frame = 1 Query: 955 EDETRSKVLIVGSGTFNPVHKIHIRRFYLARNYLEMQKGASMRVVGGIVSPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVGKGSWLAVDSWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQIHHLNPAMLRAGGFGVITVCRPLEKERLLKELSPSFRNIAILVEDATILSAELEKTSSNMVRHLLKQGKSVEGMVGKAVARYIRDNTIAERISGRQKWTVEDNAFMFDQE-DKDDRPYHNLPRLYVRRESQM 1752 ++E R +V++VGSG +NP+HK+H+R FY+AR YLE + + V+GG+VSP+H T VR ++R R EIIPPKHRL+MAR AVG +WL VD WE+TR+R+MDY+SVL+H + + FPG I I+ +C S + L+P LR +G + +CRP E ++L+ L +RN+A +VEDA ILS ELE T S VR G VE MVG VA YI + +++GR++W V D F + DR Y+ P+ RR+S + Sbjct: 423 KNEGRKQVILVGSGAYNPIHKMHLRNFYIARKYLE--EHTTYEVLGGLVSPAHATEVRSKYRQRPREIIPPKHRLAMARKAVGDSTWLTVDPWEITRRRVMDYLSVLDHVQTLFDSCFPGLP--IKIILLCNPSVLVKLSPDDLRDHNYGCLCICRPQETDQLMDTLGSRWRNVAYVVEDAAILSRELEATGSRRVRETAMAGGKVEAMVGAPVANYIVKEKLGNKMAGRERWNVRDKEFQLESGLAPQDRGYNKQPK---RRQSSI 682
BLAST of mRNA_E-siliculosus-1a_F_contig107.501.1 vs. uniprot
Match: A0A7S1XLJ5_9STRA (Hypothetical protein n=13 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLJ5_9STRA) HSP 1 Score: 223 bits (569), Expect = 7.490e-59 Identity = 117/258 (45.35%), Postives = 168/258 (65.12%), Query Frame = 1 Query: 970 SKVLIVGSGTFNPVHKIHIRRFYLARNYLEMQKGASMRVVGGIVSPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVGKGSWLAVDSWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQIHHLNPAMLRAGGFGVITVCRPLEKERLLKELS-------PSFRNIAILVEDATILSAELEKTSSNMVRHLLKQGKSVEGMVGKAVARYIRDNTIAERISGRQKWTVEDNAFMFDQEDKDDRPYHNLP 1722 +KVL+V SG +NP+HK+H+R YLAR +LE A M VVGGI+SPSH TLVRQ+ R +IIP +HRL+MAR VG WL VD+WE+TR+RIMDY+SVL H +EV T+PGH I ++Y+ + + L+P LR G+G + VCRP+E ERLLK+++ + +A +VEDA +L+ ELE+T+S VR L G+ V+ MVG +V+ Y + + +++G +KW ++ + +ED RPY P Sbjct: 486 TKVLLVASGAYNPIHKMHLRMLYLARQFLER---AGMEVVGGIISPSHATLVRQKQRRNVKQIIPQRHRLNMARLMVGGSQWLTVDAWEITRRRIMDYLSVLHHVREVAERTWPGHT--IRVVYLTKPYGMLRLSPEALRENGYGCLCVCRPVESERLLKQMAIYGSHENNPWEGVAHVVEDAAMLTHELERTTSAAVREDLIAGRDVDSMVGVSVSGYAVKHRLGGKMAGEEKWKPQEKEVRWCEEDGV-RPYRTEP 737
BLAST of mRNA_E-siliculosus-1a_F_contig107.501.1 vs. uniprot
Match: A0A6G0XKE5_9STRA (CTP_transf_like domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XKE5_9STRA) HSP 1 Score: 206 bits (523), Expect = 2.360e-54 Identity = 107/258 (41.47%), Postives = 153/258 (59.30%), Query Frame = 1 Query: 976 VLIVGSGTFNPVHKIHIRRFYLARNYLEMQKGASMRVVGGIVSPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVGKGSWLAVDSWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQIHHLNPAMLRAGGFGVITVCRPLEKERLLKELSPSFRNIAILVEDATILSAELEKTSSNMVRHLLKQGKSVEGMVGKAVARYIRDNTIAERISGRQKWTVEDNAFMFDQEDKDDRPYHNLPRLYVRRESQ 1749 V++V SG +NPVH +HIR FY+AR ++E VVGGI+SP H T VR ++R + E+IP HRL+M AA SW+ VD WE+TR+R++DY+S L H +E+C FP +LY+C + + L+ LR GFG I VCRP + E L K L + AI+VED +LS ELE+ +S VR L +G++ MVGK V Y++ + + E+I+GR++WT ED + D PY + + SQ Sbjct: 269 VVLVASGAYNPVHMLHIRAFYVARQHIEANY--KFAVVGGIISPCHDTYVRTKNRRKPREMIPNAHRLAMLEAATASSSWIEVDKWEITRRRVLDYLSTLTHVREICEAQFPQFK--FRVLYVCGVNTVVKLSHTALRDEGFGCIAVCRPNQTEMLYKHLGAKWTKTAIVVEDVGVLSCELERATSFRVRQALIEGENCAQMVGKQVFDYMQRHHVGEKIAGRERWTSEDRLWRLQ-----DLPYVEYTETEMMQSSQ 517
BLAST of mRNA_E-siliculosus-1a_F_contig107.501.1 vs. uniprot
Match: A0A8J2WKN9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WKN9_9STRA) HSP 1 Score: 200 bits (509), Expect = 3.780e-53 Identity = 102/239 (42.68%), Postives = 151/239 (63.18%), Query Frame = 1 Query: 964 TRSKVLIVGSGTFNPVHKIHIRRFYLARNYLEMQKGASMRVVGGIVSPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVGKGSWLAVDSWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQIHHLNPAMLRAGGFGVITVCRPLEKERLLKELSPSFRNIAILVEDATILSAELEKTSSNMVRHLLKQGK--SVEGMVGKAVARYIRDNTIAERISGRQKWTVEDNAF 1674 +R KV++VG G +NP+HK+H+R F +AR +LE + S V+GG++ P H T VRQR R R EII P+HRL+M RAAVG WL VDSWE+TR+R++DY+S L+H +++ + FP + + + Q+ LN L+ G IT+CRP E +RLL+++ +RN+A +VED +LS ELE S+ +RH L G ++ V A YI+ + +A+++SG Q WT D F Sbjct: 196 SRPKVVLVGRGKYNPIHKMHLRHFVIARQFLEERTRFS--VLGGLLVPKHATDVRQRCRTRPQEIITPRHRLAMVRAAVGGSPWLTVDSWEITRRRVLDYLSTLDHIRQLFEQRFPDLMAPVRFVLLVAPDQLLQLNLGELKDAGHECITICRPQEHKRLLRQMGNRWRNVAHVVEDNALLSVELESCCSSKIRHALMSGDFDAIATNVPGATLDYIKCHRLAQKMSGIQDWTRWDKDF 432
BLAST of mRNA_E-siliculosus-1a_F_contig107.501.1 vs. uniprot
Match: A0A067CKC3_SAPPC (CTP_transf_like domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CKC3_SAPPC) HSP 1 Score: 200 bits (508), Expect = 2.550e-52 Identity = 102/251 (40.64%), Postives = 151/251 (60.16%), Query Frame = 1 Query: 922 VARVKQGFKNGEDETRSKVLIVGSGTFNPVHKIHIRRFYLARNYLEMQKGASMRVVGGIVSPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVGKGSWLAVDSWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQIHHLNPAMLRAGGFGVITVCRPLEKERLLKELSPSFRNIAILVEDATILSAELEKTSSNMVRHLLKQGKSVEGMVGKAVARYIRDNTIAERISGRQKWTVEDNAF 1674 +A++ Q G + + V++V SG +NPVH +H+R FY+AR ++E VVG I+SP H T VR ++R + E+IP HRL M AA SW+ VD WE+TR+R++DY+S L H +E+C FP + +LY+C + I L+ LR GFG I VCRP + L+K L + AI+VED +L+ ELE+ +S VR L Q ++ MVGK V+ Y+ + I ++I+GR+ WT ED + Sbjct: 251 LAKIAQALA-GIAKDQEVVVLVSSGAYNPVHMLHLRAFYVARQHIE--SNYKFPVVGAIISPCHDTYVRTKNRRKPREMIPKSHRLGMLEAATATSSWIEVDKWEITRRRVLDYLSTLTHVREICEAQFPEYK--FRVLYVCGVNTIVKLSHTALRDEGFGCIAVCRPNQTAMLMKHLGAKWTKTAIVVEDMGVLTCELERATSFRVRKSLIQNEACASMVGKHVSDYLVQHRIGDKIAGREPWTAEDRLW 496
BLAST of mRNA_E-siliculosus-1a_F_contig107.501.1 vs. uniprot
Match: A0A485KS16_9STRA (Aste57867_11042 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KS16_9STRA) HSP 1 Score: 199 bits (505), Expect = 1.660e-51 Identity = 106/274 (38.69%), Postives = 153/274 (55.84%), Query Frame = 1 Query: 976 VLIVGSGTFNPVHKIHIRRFYLARNYL--------------EMQKGASMRVVGGIVSPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVGKGSWLAVDSWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQIHHLNPAMLRAGGFGVITVCRPLEKERLLKELSPSFRNIAILVEDATILSAELEKTSSNMVRHLLKQGKSVEGMVGKAVARYIRDNTIAERISGRQKWTVEDNAFMFDQEDKDDRPYHNLPRLYVRRESQMP 1755 V++V SG +NPVH +HIR FY AR ++ VVGGI+SPSH T VR ++R + E+IP HRL+M AA SW+ VD WE+TR+R++DY+S L H +E+C FP +LY+C + I L+ L+ GFG +CRP + + L K L + IAI+VED +L+ ELE+ +S VR L QG+S MVGK V Y+ + IA++I+GR+ WT ED + D PY + ++ + +P Sbjct: 294 VVLVSSGAYNPVHMLHIRAFYAARQVWLVCDCYKPTTWSPQHIEANYKFPVVGGIISPSHDTYVRTKNRRKPREMIPKTHRLAMLEAATASSSWIEVDKWEITRRRVLDYLSTLTHVREICEHQFPQFK--FRVLYVCGVNTIVKLSHTALKDEGFGCTIICRPNQTDMLHKHLGAKWSKIAIVVEDVGVLACELERATSFRVRQALIQGESCSAMVGKNVHEYMVRHRIADKIAGREPWTAEDRLWR-----AQDLPYVEYSEMEIQSRADVP 560
BLAST of mRNA_E-siliculosus-1a_F_contig107.501.1 vs. uniprot
Match: A0A1V9YQ77_9STRA (CTP_transf_like domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQ77_9STRA) HSP 1 Score: 193 bits (491), Expect = 2.090e-51 Identity = 108/281 (38.43%), Postives = 158/281 (56.23%), Query Frame = 1 Query: 883 LVSPNNPFTSNAV---VARVKQGFKNGEDETRSKVLIVGSGTFNPVHKIHIRRFYLARNYLEMQKGASMRVVGGIVSPSHPT--------------LVRQRHRVRAAEIIPPKHRLSMARAAVGKGSWLAVDSWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQIHHLNPAMLRAGGFGVITVCRPLEKERLLKELSPSFRNIAILVEDATILSAELEKTSSNMVRHLLKQGKSVEGMVGKAVARYIRDNTIAERISGRQKWTVEDNAF 1674 L+S F ++ V + ++ QG N + + V++V SG +NPVH +HIR FY+AR ++E VVG I+SP H T +VR ++R + E+IP HRL M AA SW+ VD WE+TR+R++DY+S L H +E+C FP + +LY+C + I L+ LR GFG I VCRP + E L+K L + AI+ ED +L+ ELE+ +S VR L Q + MVGK V+ Y+ N I ++I+GR+ WT ED + Sbjct: 77 LISAPPVFNASEVSYPLTKIAQGLANIARD-QEVVVLVSSGAYNPVHMLHIRAFYVARQHIE--SNYKFPVVGAIISPCHDTYGVSAARISPVIDLVVRTKNRRKPREMIPKSHRLGMLEAATMSSSWIEVDKWEITRRRVLDYLSTLTHVREICEAQFPAYK--FRVLYVCGVNTIVKLSHTALRDEGFGCIAVCRPNQTEMLMKHLGAKWSKTAIVAEDMGVLTCELERATSFRVRKSLIQNEPCAAMVGKHVSDYMIANRIGDKIAGREPWTAEDRLW 352
BLAST of mRNA_E-siliculosus-1a_F_contig107.501.1 vs. uniprot
Match: A0A024TUB6_9STRA (CTP_transf_like domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TUB6_9STRA) HSP 1 Score: 196 bits (499), Expect = 5.040e-51 Identity = 99/234 (42.31%), Postives = 144/234 (61.54%), Query Frame = 1 Query: 976 VLIVGSGTFNPVHKIHIRRFYLARNYLEMQKGASMRVVGGIVSPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVGKGSWLAVDSWEVTRKRIMDYMSVLEHAKEVCHETFPGHAGDITILYMCQASQIHHLNPAMLRAGGFGVITVCRPLEKERLLKELSPSFRNIAILVEDATILSAELEKTSSNMVRHLLKQGK-SVEGMVGKAVARYIRDNTIAERISGRQKWTVEDNAF 1674 V++V SG +NPVH +HIR FY+AR ++E S VVGGI+SP H T VR ++R + E+IP HRL+M AA +W+ VD WE+TR+R++DY+S L H +E+C FP +LY+C + I L+ L+ GFGV+ +CRP + + L K L + AI+VED +L+ ELE+ +S VR L QG V MVGK V Y+ + I ++++GR+ WT D + Sbjct: 265 VVLVSSGAYNPVHMLHIRAFYVARQHIE--SNYSFPVVGGIISPCHDTYVRTKNRRKPREMIPKAHRLAMLEAATASSTWIEVDKWEITRRRVLDYLSTLTHVREICEHQFPHFK--FRVLYVCGVNTIVKLSHTALKEEGFGVMAICRPNQTDMLHKHLGAKWSKTAIVVEDTGVLACELERATSFRVRQALIQGNVDVAPMVGKNVDEYMHRHRIGDKVAGREPWTSGDRLW 494 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig107.501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig107.501.1 >prot_E-siliculosus-1a_F_contig107.501.1 ID=prot_E-siliculosus-1a_F_contig107.501.1|Name=mRNA_E-siliculosus-1a_F_contig107.501.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=589bp MMSNPPSCGRQMEVDRGNDDARRWKRVRTLESSLGYSNLAFQGDRRKFSQback to top mRNA from alignment at E-siliculosus-1a_F_contig107:57387..61400+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig107.501.1 ID=mRNA_E-siliculosus-1a_F_contig107.501.1|Name=mRNA_E-siliculosus-1a_F_contig107.501.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4014bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:57387..61400+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig107:57387..61400+ >mRNA_E-siliculosus-1a_F_contig107.501.1 ID=mRNA_E-siliculosus-1a_F_contig107.501.1|Name=mRNA_E-siliculosus-1a_F_contig107.501.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3534bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:57387..61400+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |