mRNA_E-siliculosus-1a_F_contig107.500.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig107.500.1 vs. uniprot
Match: D7FJ01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ01_ECTSI) HSP 1 Score: 540 bits (1390), Expect = 1.450e-185 Identity = 276/319 (86.52%), Postives = 283/319 (88.71%), Query Frame = 1 Query: 40 MGSAAGVPTPEEMSVYYEVKKVYEGLSELQKQDESELTALADMYRKGSERCARKTDDDQVHQLLALSVDEKLELGKAVLQAVLQKENVLRVKIESAGDYDKSFGGTKQDTQVENEYASLVRGDHGAEPTEHAFPILRTVECNNQEDLAKLRSAGSWLRYLGAKGCYLWIHSLTREVTALRPPDYVDENSLADAKEEEDVTGGYPTCPLSGLPELIEKIVDQDKRTPLLIDNSEEGKVTAYLSYKAVLVDVSVLAIGYQKSGTKVRPTSSGILGRNCVGSVYHTVYTVAPSERVRPINMHYTVVDFSLLNVHEAGQNVPL 996
MGSA GVPTPEEM+VYYEVKK GSERCARKTDDDQVHQLLALSVDEKLELGKAVLQAVLQKEN LRVK+ESAGDYDKSFGGTKQDTQVENEYASLVRGDHGAEPTEH FPILR VECNNQEDL KLRSAG+WLRYLGAKGCYLWIHSLTREVTALRP DYVDENSLA+AKEEEDVTGGYPTCPLSGLPELIEKIVDQDKRTPLLIDNSEEGKVTAYLSYKAVLVDVSVLAIGYQKSGTKVRPTSSGILGRN VGSVYHTV VAP+ERV+PINMHY VV+ SLLNVHEAGQNVPL
Sbjct: 1 MGSAVGVPTPEEMTVYYEVKK-------------------------GSERCARKTDDDQVHQLLALSVDEKLELGKAVLQAVLQKENGLRVKMESAGDYDKSFGGTKQDTQVENEYASLVRGDHGAEPTEHTFPILRIVECNNQEDLVKLRSAGNWLRYLGAKGCYLWIHSLTREVTALRPHDYVDENSLAEAKEEEDVTGGYPTCPLSGLPELIEKIVDQDKRTPLLIDNSEEGKVTAYLSYKAVLVDVSVLAIGYQKSGTKVRPTSSGILGRNWVGSVYHTVDIVAPAERVKPINMHYAVVNSSLLNVHEAGQNVPL 294
BLAST of mRNA_E-siliculosus-1a_F_contig107.500.1 vs. uniprot
Match: A0A7S2CQW7_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CQW7_9STRA) HSP 1 Score: 136 bits (343), Expect = 4.350e-31 Identity = 79/205 (38.54%), Postives = 120/205 (58.54%), Query Frame = 1 Query: 244 DEKLELGKAVLQAVLQKENVLR----VKIESAGDYDKSFGGTKQDTQVENEYASLVRGD-HGAEPTEHAFPILR-TVECNNQEDLAKLRSAGSWLRYLGAKGCYLWIHSLTREVTALRPPDYVDENSLADAKEEEDVTGGYPTCPLSGLPELIEKIVDQDKRTPLLIDNSEEGKVTAYLSYKAVLVDVSVLAIGYQ-KSGTKVRP 837
DEK+ + + VL+A + +E VK + + DY KSF GT DT+ E ++ L+ D +EP E P+L V ++ +LR+AG W++ +G GC+++IHSLT E +LRP D+VDE A E D G + +S L + I K V+ ++ TPLLIDNSEEG +T + SYK++L D+S L + Q + K++P
Sbjct: 76 DEKMSIAEEVLKAAVSREKTFAKDSAVKTKES-DYSKSFSGTAADTKAEKDFGKLMSEDVDNSEPIEACDPVLSPVVTADDSARYEELRAAGKWMKLMGGAGCFMYIHSLTHETVSLRPEDFVDEE--AKVVETVDPACGLCSVGISDLMDEIAKTVETEQMTPLLIDNSEEGVLTTFFSYKSILCDLSDLGLPLQERRKKKIKP 277
BLAST of mRNA_E-siliculosus-1a_F_contig107.500.1 vs. uniprot
Match: A0A0G4EW28_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EW28_VITBC) HSP 1 Score: 98.2 bits (243), Expect = 8.860e-19 Identity = 67/195 (34.36%), Postives = 100/195 (51.28%), Query Frame = 1 Query: 256 ELGKAVLQAVLQKENVLRVKIESAGDYDKSFGGTKQDTQVENEYASLVRGDHGAEPTEHAFPILRTVECNNQEDLAKLRSAGSWLRYLGAKG-CYLWIHSLTREVTALRPPDYVDENSLADAKEEEDVTGGY-PTCPLSGLPELIEKIVDQDKRTPLLIDNSE-EGKVTAYLSYKAVLVDVSVLAIGYQKSGTKV 831
E K L+A++++ L A DY KSF G+K+ E E+A+LV+ D E + K + G W R+L A+G CYL+IH++T+E+TA+RP +YVDE + ++DV PT L L +E+ + K PLL+ N E V + YK ++D LA+G K+GTKV
Sbjct: 5 EYSKDELEAIVKR---LAAVSMDANDYSKSFSGSKEMAAAEKEFATLVKDDKN--------------EASMGGVSEKSLTTGKWYRFLNAQGTCYLYIHNITKEITAIRPENYVDEPNTTQQGGDDDVNKTKEPTIQLRQLEAELERCKNAQK-IPLLLCNEETHDNVVTFFKYKGFVLDCRPLALGGIKTGTKV 181
BLAST of mRNA_E-siliculosus-1a_F_contig107.500.1 vs. uniprot
Match: F0Y5N5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5N5_AURAN) HSP 1 Score: 86.7 bits (213), Expect = 1.840e-15 Identity = 43/107 (40.19%), Postives = 68/107 (63.55%), Query Frame = 1 Query: 517 LGAKGCYLWIHSLTREVTALRPPDYVDENSLADAKEEEDVTGGYPTCPLSGLPELIEKIVDQDKRTPLLIDNSEEGKVTAYLSYKAVLVDVSVLAIGYQKSGTKVRP 837
+G GCY+++HSLT E A RP ++D+ L K +ED GG P L+ + I++I++++K+TPLL+D SE+ K+ + S+K VLVD + LA+ + K RP
Sbjct: 1 MGGSGCYVYVHSLTHEFAANRPDGFIDDGDL---KAKEDAAGGLPVVALTEVVGEIKRIIEEEKKTPLLLDASEDRKLATFFSFKGVLVDGTKLALPLRN---KARP 101
BLAST of mRNA_E-siliculosus-1a_F_contig107.500.1 vs. uniprot
Match: A0A7S0MT40_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MT40_9CHLO) HSP 1 Score: 62.0 bits (149), Expect = 9.290e-8 Identity = 43/137 (31.39%), Postives = 66/137 (48.18%), Query Frame = 1 Query: 355 TKQDTQVENEYASLVRGDHGAEPTEHAFPILR-TVECNNQEDLAKLRSAGSWLRYLGA-KGCYLWIHSLTREVTALRPPDYVDENS------LADAKEEEDVTGGYPTCPLSGLPELIEKIVDQDKRTPLLIDNSEE 741
TK DT VE L+RG GA F + T ++ E + G WLR L K CYL++H++T E+T ++P + D + L A E DV +C + L E ++ + K+TPL++ N E+
Sbjct: 1 TKNDTVVEKSMEQLMRG--GAAEESGPFQLGPCTCSTHSAEGVHAKDCPGKWLRTLNKQKTCYLYVHTITHEITGIKPDGFYDPEAERRAALLLAAGEFPDVA----SCYMENLEEQARAMIAEQKKTPLILTNGED 131 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig107.500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig107.500.1 >prot_E-siliculosus-1a_F_contig107.500.1 ID=prot_E-siliculosus-1a_F_contig107.500.1|Name=mRNA_E-siliculosus-1a_F_contig107.500.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=372bp MGSAAGVPTPEEMSVYYEVKKVYEGLSELQKQDESELTALADMYRKGSERback to top mRNA from alignment at E-siliculosus-1a_F_contig107:51697..57150- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig107.500.1 ID=mRNA_E-siliculosus-1a_F_contig107.500.1|Name=mRNA_E-siliculosus-1a_F_contig107.500.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5454bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:51697..57150- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig107:51697..57150- >mRNA_E-siliculosus-1a_F_contig107.500.1 ID=mRNA_E-siliculosus-1a_F_contig107.500.1|Name=mRNA_E-siliculosus-1a_F_contig107.500.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2232bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:51697..57150- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |