mRNA_E-siliculosus-1a_F_contig107.498.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig107.498.1 vs. uniprot
Match: D7FIZ9_ECTSI (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ9_ECTSI) HSP 1 Score: 438 bits (1126), Expect = 1.820e-151 Identity = 223/235 (94.89%), Postives = 225/235 (95.74%), Query Frame = 2 Query: 71 MMDRLSFSIFAIAHFVTHAFVPATFPHLGVRRATGLRMRSSPADEGMSRGQVIRSVAAACVVSSTAWSTAAVGVSAKAPAPVMKLPDADDGVKPALRSGGEGSIPPFTVLPSGVQITDIVAGDGPVADAGKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQINTRNKEPLTFEVKLTKVR 775
MMDRLSFSIFAIA VTHAFVPATFPHLGVRRATGLRM SSPADEGMSRG+V+RSVAAACV STAWST AVGVSAKAPAPVMKLPD DD KPALRSGGEGSIPPFTVLPSGVQITDIVAGDGPVAD GKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQINTRNKEPLTFEVKLTKVR
Sbjct: 1 MMDRLSFSIFAIAQLVTHAFVPATFPHLGVRRATGLRMCSSPADEGMSRGEVLRSVAAACVTGSTAWSTTAVGVSAKAPAPVMKLPD-DDSAKPALRSGGEGSIPPFTVLPSGVQITDIVAGDGPVADTGKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQINTRNKEPLTFEVKLTKVR 234
BLAST of mRNA_E-siliculosus-1a_F_contig107.498.1 vs. uniprot
Match: A0A835YL48_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL48_9STRA) HSP 1 Score: 172 bits (437), Expect = 2.740e-46 Identity = 85/156 (54.49%), Postives = 111/156 (71.15%), Query Frame = 2 Query: 317 MKLPDADDGVKPALR--SGGEG-SIPPFTVLPSGVQITDIVAGDGPVADAGKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQINTRNKEPLTFEVKLTKVR 775
+ LP ++ P L+ SG E ++P F LPSGV+ITDI G+G G V+L+WV+RRSNGY+V SSE +PFIYRVGDA++AIKG D+GIRGMK GG RR++VPPELGYV+G D PGP+P G GP++Q+ R EP FEV+++ VR
Sbjct: 193 VNLPVVEEFDTPQLKGLSGDENPNLPQFRALPSGVRITDIQVGNGAEVKEGSTVSLQWVLRRSNGYFVDSSEAHNYDPFIYRVGDAQKAIKGFDEGIRGMKQGGKRRMIVPPELGYVQGAADNKPGPVPTGYGPQRQVTNRKNEPFFFEVEVSHVR 348
BLAST of mRNA_E-siliculosus-1a_F_contig107.498.1 vs. uniprot
Match: A0A1Z5JCU4_FISSO (Peptidylprolyl isomerase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JCU4_FISSO) HSP 1 Score: 137 bits (345), Expect = 5.450e-35 Identity = 71/137 (51.82%), Postives = 94/137 (68.61%), Query Frame = 2 Query: 389 FTVLPSGVQITDIVAGDGP-VADAGKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQI----NTRNKEP---LTFEVKLTKVR 775
+ LPSGV D+ G G +A+ G V L+WV+RRSNGY+V SSE G PFI+ VGD K AI+G+D+G++GMK GG RRI++PP L YVEG +DG PGP+P G GP+QQ+ N R P + EV+LT++R
Sbjct: 39 YKKLPSGVVYADLRPGSGTEMAEQGSRVNLQWVLRRSNGYFVDSSERNDGVPFIFEVGDGK-AIQGIDEGVQGMKVGGVRRILIPPALAYVEGLEDGKPGPLPAGFGPRQQMRRVMNVRKDVPGEYVFLEVQLTRLR 174
BLAST of mRNA_E-siliculosus-1a_F_contig107.498.1 vs. uniprot
Match: A0A7S4J203_9STRA (Peptidylprolyl isomerase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J203_9STRA) HSP 1 Score: 138 bits (347), Expect = 1.690e-34 Identity = 63/108 (58.33%), Postives = 79/108 (73.15%), Query Frame = 2 Query: 398 LPSGVQITDIVAGDGPVADAGKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQI 721
LPSGV D+ G G V + GK V ++WV++RSNGY+V SS G PFI+ VGD K A+ G+D+GIRGM+ GG RRI+VPP L YVEG +DG PGPIP G GPKQ++
Sbjct: 106 LPSGVMYVDLRPGSGDVVEEGKRVNVQWVLKRSNGYFVDSSSNNDGVPFIFTVGDPKGAMAGVDEGIRGMRVGGIRRIIVPPNLAYVEGVEDGKPGPIPAGFGPKQRM 213
BLAST of mRNA_E-siliculosus-1a_F_contig107.498.1 vs. uniprot
Match: B8C0A9_THAPS (Peptidylprolyl isomerase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0A9_THAPS) HSP 1 Score: 136 bits (343), Expect = 1.210e-33 Identity = 73/136 (53.68%), Postives = 85/136 (62.50%), Query Frame = 2 Query: 389 FTVLPSGVQITDIVAGDGPVADAGKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQIN----TRNKEP---LTFEVKLTKVR 775
+ L SGV DI AG G G V L+WV+RRSNGY+V SS PFI+ VGD K AI GLD +RGMK GGTRRI++PP+L YV G DG PGPIP G GP+QQ+ R P + EVKLTKVR
Sbjct: 128 YNKLESGVIYADINAGSGETVKEGSRVNLQWVLRRSNGYFVDSSAVSDSVPFIFTVGDPKGAIAGLDQAVRGMKVGGTRRILIPPKLAYVGGVDDGKPGPIPAGFGPRQQMRRVMEVRKDVPGEYIFLEVKLTKVR 263
BLAST of mRNA_E-siliculosus-1a_F_contig107.498.1 vs. uniprot
Match: A0A1Z5K3Y4_FISSO (Peptidylprolyl isomerase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K3Y4_FISSO) HSP 1 Score: 134 bits (338), Expect = 2.490e-33 Identity = 71/137 (51.82%), Postives = 91/137 (66.42%), Query Frame = 2 Query: 389 FTVLPSGVQITDIVAGDGP-VADAGKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQI----NTRNKEP---LTFEVKLTKVR 775
+ LPSGV D+ G G A G V L+WV+RRSNGY+V SSE G PFI+ VGD K AI+G+D+G+RGMK GG RRI++PP L YVEG +DG PGP+P GP+QQ+ N R P + EV+LT++R
Sbjct: 92 YKKLPSGVVYADLRPGSGTETAQQGSRVNLQWVLRRSNGYFVDSSERNDGVPFIFEVGDGK-AIQGIDEGVRGMKVGGVRRILIPPSLAYVEGLEDGKPGPLPACFGPRQQMRRVMNVRKDVPGEYVFLEVQLTRLR 227
BLAST of mRNA_E-siliculosus-1a_F_contig107.498.1 vs. uniprot
Match: A0A7S2E2F1_9STRA (Peptidylprolyl isomerase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E2F1_9STRA) HSP 1 Score: 132 bits (331), Expect = 2.620e-33 Identity = 67/134 (50.00%), Postives = 88/134 (65.67%), Query Frame = 2 Query: 398 LPSGVQITDIVAGDGP-VADAGKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQIN----TRNKEP---LTFEVKLTKVR 775
LPSGV D+ G G VA G V ++WV+R+SNGY+V SSE G PFI+ VGD AI G+D+GIRGMK GG RR+++PP+ YV G +DG PGP+P G GPKQQ+ R P + E++LT++R
Sbjct: 14 LPSGVIYADLRVGSGEEVASEGSRVNIQWVLRKSNGYFVDSSEVSDGVPFIFTVGDKSGAIAGVDEGIRGMKVGGVRRLLIPPKFAYVTGVEDGKPGPVPAGFGPKQQMRRVMEVRRDVPGEYIFLEIQLTRLR 147
BLAST of mRNA_E-siliculosus-1a_F_contig107.498.1 vs. uniprot
Match: A0A7S2E4F5_9STRA (Peptidylprolyl isomerase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E4F5_9STRA) HSP 1 Score: 132 bits (332), Expect = 1.780e-31 Identity = 67/137 (48.91%), Postives = 89/137 (64.96%), Query Frame = 2 Query: 389 FTVLPSGVQITDIVAGDGP-VADAGKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQIN----TRNKEP---LTFEVKLTKVR 775
+ LPSGV D+ G G VA G V ++WV+R+SNGY+V SSE G PFI+ VGD AI G+D+GIRGMK GG RR+++PP+ YV G +DG PGP+P G GPKQQ+ R P + E++LT++R
Sbjct: 186 YKKLPSGVIYADLRVGSGEEVASEGSRVNIQWVLRKSNGYFVDSSEVSDGVPFIFTVGDKSGAIAGVDEGIRGMKVGGVRRLLIPPKFAYVTGVEDGKPGPVPAGFGPKQQMRRVMEVRRDVPGEYIFLEIQLTRLR 322
BLAST of mRNA_E-siliculosus-1a_F_contig107.498.1 vs. uniprot
Match: A0A6U3UST0_9STRA (Peptidylprolyl isomerase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3UST0_9STRA) HSP 1 Score: 130 bits (326), Expect = 3.300e-31 Identity = 64/136 (47.06%), Postives = 88/136 (64.71%), Query Frame = 2 Query: 389 FTVLPSGVQITDIVAGDGPVADAGKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQIN----TRNKEP---LTFEVKLTKVR 775
+ LPSGV D+ G+G A G ++WV+R+SNGY+V SSE G PFI+ VGD AI G+D+GIRGMK GG RR+++ P+ YV G +DG PGP+P+G GPKQQ+ R P + E++LT++R
Sbjct: 128 YKKLPSGVIYADLRVGNGEEAVEGSRANIQWVLRKSNGYFVDSSEVSDGVPFIFTVGDKNGAIAGVDEGIRGMKVGGVRRLLIQPKYAYVTGVEDGKPGPLPVGFGPKQQMRRVMEARKDVPGEYIFLEIQLTRIR 263
BLAST of mRNA_E-siliculosus-1a_F_contig107.498.1 vs. uniprot
Match: A0A7S1Y8I9_9STRA (Peptidylprolyl isomerase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y8I9_9STRA) HSP 1 Score: 129 bits (323), Expect = 4.170e-31 Identity = 65/136 (47.79%), Postives = 88/136 (64.71%), Query Frame = 2 Query: 389 FTVLPSGVQITDIVAGDGPVADAGKGVTLKWVMRRSNGYYVSSSEEGGGEPFIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPELGYVEGCKDGNPGPIPMGLGPKQQI----NTRNKEP---LTFEVKLTKVR 775
+ LPSGV D+ G VA G V L+WV+R+SNGY+V SSE PFI+ +GD AI G+D+ +RGMK+GG RRI++PP L YV+G +DG PGP+P G GP+QQ+ N R P + EV+ T++R
Sbjct: 99 YKKLPSGVIYADLRQGKDVVASEGSKVNLQWVLRKSNGYFVDSSERNADVPFIFTIGDGT-AIAGVDEAVRGMKAGGVRRILIPPSLAYVQGLEDGKPGPLPYGFGPRQQMRRVQNVRADVPGEYIFLEVQATRIR 233 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig107.498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig107.498.1 >prot_E-siliculosus-1a_F_contig107.498.1 ID=prot_E-siliculosus-1a_F_contig107.498.1|Name=mRNA_E-siliculosus-1a_F_contig107.498.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=236bp MMDRLSFSIFAIAHFVTHAFVPATFPHLGVRRATGLRMRSSPADEGMSRGback to top mRNA from alignment at E-siliculosus-1a_F_contig107:33661..39002+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig107.498.1 ID=mRNA_E-siliculosus-1a_F_contig107.498.1|Name=mRNA_E-siliculosus-1a_F_contig107.498.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5342bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:33661..39002+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig107:33661..39002+ >mRNA_E-siliculosus-1a_F_contig107.498.1 ID=mRNA_E-siliculosus-1a_F_contig107.498.1|Name=mRNA_E-siliculosus-1a_F_contig107.498.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1416bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:33661..39002+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |