mRNA_E-siliculosus-1a_F_contig107.495.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig107.495.1 vs. uniprot
Match: D7FIZ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ6_ECTSI) HSP 1 Score: 817 bits (2110), Expect = 2.310e-292 Identity = 438/455 (96.26%), Postives = 445/455 (97.80%), Query Frame = 3 Query: 402 MPAARASSFSLNPWVARNWGLIIAAAVTVATVAFSLGTTASTSRFGAMTGAARVGQQSLYSSPKSRGGISVARAQRPSSIRPHGRVLQED-PTVITPIVEYGTKLQIFMCNPSLEVEGNDAHLVDEASLAAALSNISGIKQADEGDITVTIKTEPVDVDDVSYMCDTDGMLQWHAQVEYSAAYAGSRDTTPAVLAAQANDYVAYSSSQFKALLAGFINAEYAGAAETVELSADDILIPTVGWIVTFPAEESVTQETHTAGSSDGLAMGIGSDSSLWAWWVWLIYALLVACCLXXXXXXXXXXQADEKEAARDRLIATRKGRGEEGLAKIRGPEWGITELDFEGDYDAYQSQEMKREYDGAGKGVEPTAYRPSHRAGQQSVSAQAWMQEAGKKSAWAQSSGNSSRQGGGQSPVVRRFDIDDDDADDGVGKLRSKHPQYSFDVGRGGFNDRDGESKS 1763
MPAARASS SLNPWVARNWGL+IAAA TVATVAFSLGTTASTSR GAMTG+ARVGQQSLY+SPKSRGGISVA+AQRPSS+RPHGRVLQE+ PTVITPIVEYGTKLQIFMCNPSLEVEGNDAHLVDEASLAAALSNISGIKQADEGDITVTIKTEPVDVDDVSYMCDTDGMLQWHAQVEYSAAYAGSRDTTPAVLAAQANDYVAYSSSQFKALLAGFINAEYAG ETVELSADDILIPTVGWIVTFPAEESVTQETHTAGSSDGLAMGIGSDSSLWAWWVWLIYALLVAC XXXXXXXXXX ADEKEAARDRLIATRKGRGEEGLAKIRGPEWGITELDFEGDYDAYQSQEMKREYDGAG+GVEPTAYRPSHRAGQQSVSAQAWMQEAGKKSAWAQ SGNSSRQGGGQSPVVRRFDIDDDDADDGVGKLRSKHPQYSFDVGRGGFNDRDGESKS
Sbjct: 1 MPAARASSSSLNPWVARNWGLVIAAAATVATVAFSLGTTASTSRSGAMTGSARVGQQSLYASPKSRGGISVAQAQRPSSVRPHGRVLQEETPTVITPIVEYGTKLQIFMCNPSLEVEGNDAHLVDEASLAAALSNISGIKQADEGDITVTIKTEPVDVDDVSYMCDTDGMLQWHAQVEYSAAYAGSRDTTPAVLAAQANDYVAYSSSQFKALLAGFINAEYAGEVETVELSADDILIPTVGWIVTFPAEESVTQETHTAGSSDGLAMGIGSDSSLWAWWVWLIYALLVACXXXXXXXXXXXXXADEKEAARDRLIATRKGRGEEGLAKIRGPEWGITELDFEGDYDAYQSQEMKREYDGAGRGVEPTAYRPSHRAGQQSVSAQAWMQEAGKKSAWAQPSGNSSRQGGGQSPVVRRFDIDDDDADDGVGKLRSKHPQYSFDVGRGGFNDRDGESKS 455
BLAST of mRNA_E-siliculosus-1a_F_contig107.495.1 vs. uniprot
Match: A0A835YQ53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ53_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 9.830e-16 Identity = 99/338 (29.29%), Postives = 143/338 (42.31%), Query Frame = 3 Query: 684 TPIVEYGTKLQIFMCNPSLEVEGNDAHLVDEASLAAALSNISGIKQADEGDITVTIKTEPVDVDDVSYMCDTDGMLQWHAQVEY----------SAAYAGSRDTT-----------PAVLAAQANDYVAYSSSQFKALLAGFINAEYAGAAETVELSA-----DDILIPTVGWIVTFPAEESVTQETHTAGSSDGLAMGIG-SDSSLWAWWVWLIYALLVACCLXXXXXXXXXXQADEKEAARDR--LIATRKGRGEEGLAKIRGPEWGITELDFEGDYDAYQSQEMKREYDGAGKGVEPTAYRPSH------RAGQQSV--SAQAWMQEAGKKSAWA 1586
TPI Y + +F+C V ++ V E+ + A+ ++ + ++V T Y C G QW V Y +A + +TT A++AND+V YS A F A YA A L A D+ + + GWI F + E A S+ + M +G + + +W W W+++AL V C +A E E + L+ RK EEGL KI G E+GIT LDF+G+Y+ Y+ +M+ EY GA A R SH AG +V SA AW E GKKS +A
Sbjct: 113 TPI-SYEAQFNMFICPTQAGVANSNVKAVTESHVRDAVLSLDAFGKPSLDAVSVGFTTYRA-----PYKCAIAGSTQWSVSVVYRDPSYYRRHLTAVATTATNTTLSAGYVDPSSNAVTRASEANDWVTYSFPNNST--ADFRTAFYAAVAAAAGLPAGAITYSDLQVQSSGWIARFSSSEGSVPPGSLAFSTPTM-MSVGIAGNEVWPAWAWVLFALAVLACALPLCMFILKKRAAEFEEEEEGYGLLKLRK---EEGLEKIHGNEFGITNLDFDGNYNDYEEPKMQDEYAGA---TAAAASRASHGHKRMDSAGTSTVDVSATAWSNEKGKKSNFA 435 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig107.495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig107.495.1 >prot_E-siliculosus-1a_F_contig107.495.1 ID=prot_E-siliculosus-1a_F_contig107.495.1|Name=mRNA_E-siliculosus-1a_F_contig107.495.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=478bp MARDELLKRSRRGAAVSARLVRTMPAARASSFSLNPWVARNWGLIIAAAVback to top mRNA from alignment at E-siliculosus-1a_F_contig107:12054..15703- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig107.495.1 ID=mRNA_E-siliculosus-1a_F_contig107.495.1|Name=mRNA_E-siliculosus-1a_F_contig107.495.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3650bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:12054..15703- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig107:12054..15703- >mRNA_E-siliculosus-1a_F_contig107.495.1 ID=mRNA_E-siliculosus-1a_F_contig107.495.1|Name=mRNA_E-siliculosus-1a_F_contig107.495.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2868bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:12054..15703- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |