mRNA_E-siliculosus-1a_F_contig107.494.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig107.494.1 vs. uniprot
Match: D7FIZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ5_ECTSI) HSP 1 Score: 660 bits (1704), Expect = 9.640e-237 Identity = 329/341 (96.48%), Postives = 337/341 (98.83%), Query Frame = 1 Query: 1 LQHCTAVHGQGRHSEVDVNMEHRSAIGLFLSLAVHVNRPAAALNTRLPIGRGVRALHTTTAAADAGDTSSYIVDVDANLLHADLSNDIDHHIQVASSVGVKQFVVPGSTVEDSRGSLELARRKPNVVFSTAGVHPYHVQGCGSLEDAMASIATLAATEEARCVGECGLDYSEGFPAAELQLPWFERQVELACKLKKPLFLHERAAFVDFSEVLRRYDASHGLPPCLVHCFTGSEEELIAYIEMGFFVSVAGGICREKSGAALRAAVKRIPLDRLMVETDAPYLGFSGCRKGHDKPKKQNPNVPSALPAVVRVVAECLGLPFEEVARATLQNSRQFFGMATL 1023 LQHCTAVHGQGRHS VD+NMEHRSAIGLFLSLAVH+NRPAAALNTRLPIGRGVR LHTT AAADAG++SSYIVDVDANLLHADLSNDIDHHIQ+ASSVGVKQFVVPGSTVEDSRGSLELARRKPNVVFSTAGVHPYHVQGCGSLEDAMASIATLAATEEARCVGECGLDYSEGFPAAELQLPWFERQVELACKLKKPLFLHERAAFVDFSEVLRRYDASHGLPPCLVHCFTGSEEEL AYI+MGFFVSVAGGICREKSGAALRAAVKRIPLDRLMVETDAPYLGFSGCRKGHDKPKKQNPNVPSALPAVVRV+AECLGLPFEEVA+ATLQNSRQFFGMATL Sbjct: 6 LQHCTAVHGQGRHSGVDINMEHRSAIGLFLSLAVHLNRPAAALNTRLPIGRGVRGLHTT-AAADAGESSSYIVDVDANLLHADLSNDIDHHIQIASSVGVKQFVVPGSTVEDSRGSLELARRKPNVVFSTAGVHPYHVQGCGSLEDAMASIATLAATEEARCVGECGLDYSEGFPAAELQLPWFERQVELACKLKKPLFLHERAAFVDFSEVLRRYDASHGLPPCLVHCFTGSEEELTAYIDMGFFVSVAGGICREKSGAALRAAVKRIPLDRLMVETDAPYLGFSGCRKGHDKPKKQNPNVPSALPAVVRVLAECLGLPFEEVAQATLQNSRQFFGMATL 345
BLAST of mRNA_E-siliculosus-1a_F_contig107.494.1 vs. uniprot
Match: A0A835Z870_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z870_9STRA) HSP 1 Score: 317 bits (812), Expect = 7.430e-102 Identity = 153/268 (57.09%), Postives = 202/268 (75.37%), Query Frame = 1 Query: 214 IVDVDANLLHADLSNDIDHHIQVASSVGVKQFVVPGSTVEDSRGSLELARRKPNVVFSTAGVHPYHVQGCGSLEDAMASIATLAATEEARCVGECGLDYSEGFPAAELQLPWFERQVELACKLKKPLFLHERAAFVDFSEVLRRYDASH-GLPPCLVHCFTGSEEELIAYIEMGFFVSVAGGICREKSGAALRAAVKRIPLDRLMVETDAPYLGFSGCRKGHDKPKKQNPNVPSALPAVVRVVAECLGLPFEEVARATLQNSRQFFGM 1014 +VDVDANL H L+ D HI +A VGV+Q VVPGS + DS+ +L+LAR+ P +++ TAG+HPY V+ CG LE AM+++A L A CVGECGLD+SEGFP ELQLP+FERQV+LA + +KPLFLHER A F++VLR +A+ GLPPCLVHCFTG+ EL Y++MGF++ V G + ++ G LR ++++PLDRLMVETDAPYLGF GCRKGH +PK+Q PNVPSALP VV+ VA+ +G+ +VA + +N+R+FFGM Sbjct: 50 LVDVDANLCHEALAADAAVHIDMARDVGVRQMVVPGSDLADSKAALDLARKYPGILYPTAGIHPYCVKDCGELEPAMSTLAELLADPLFTCVGECGLDFSEGFPEPELQLPFFERQVQLAVETRKPLFLHERLASRPFTDVLRAANAAPPGLPPCLVHCFTGTGSELSVYLQMGFYIGVTGFLLKKPHGNVLRGCLQQVPLDRLMVETDAPYLGFPGCRKGHSQPKRQYPNVPSALPLVVQAVADAMGVSALDVAAHSTRNARKFFGM 317
BLAST of mRNA_E-siliculosus-1a_F_contig107.494.1 vs. uniprot
Match: K3WCX9_GLOUD (Uncharacterized protein n=2 Tax=Globisporangium ultimum TaxID=2052682 RepID=K3WCX9_GLOUD) HSP 1 Score: 266 bits (680), Expect = 1.760e-82 Identity = 128/271 (47.23%), Postives = 186/271 (68.63%), Query Frame = 1 Query: 214 IVDVDANLLHADLSNDIDHHIQVASSVGVKQFVVPGSTVEDSRGSLELARRKPNVVFSTAGVHPYHVQGCGSLEDAMASIATLAATEEARCVGECGLDYSEGFPAAELQLPWFERQVELACKLKKPLFLHERAAFVDFSEVLRRYDASHG--LPPCLVHCFTGSEEELIAYIEMGFFVSVAGGICREKSGAALRAAVKRIPLDRLMVETDAPYLGFSGCRKGHDK-PKKQNPNVPSALPAVVRVVAECLGLPFEEVARATLQNSRQFFGMA 1017 + D D NL H D+ D++ H+Q ++ GV + +VPG+T+E+S+ +++L R+ P +F TAGVHPYH + E+ +A+++ LA EE R VGECGLDYS FP A+LQ WF+ Q++LAC+L+KPLFLHER A DF ++++ PP +VHCFTG+E+EL Y+ GF++ + G IC+++ GA+LRA V+ IPL +L++ETDAPY+GF CR+ PKKQ PNVPSALP VV +A LG +E+A T N+R+F ++ Sbjct: 19 LFDFDCNLTHDDMVADVEMHMQHGAAAGVTEMLVPGATLEESQAAIDLCRKYPTQLFPTAGVHPYHALALPTPEE-LATLSDLAQLEECRAVGECGLDYSPSFPDAKLQQEWFKVQLDLACRLQKPLFLHERLAHDDFMALIKQCQQKFNDYFPPVVVHCFTGNEQELREYVRQGFYIGITGFICKKEHGASLRAMVQHIPLQKLVIETDAPYMGFPKCRRYEPSHPKKQYPNVPSALPQVVEAIATALGKTPQEIALITKANARRFLRLS 288
BLAST of mRNA_E-siliculosus-1a_F_contig107.494.1 vs. uniprot
Match: A0A662WGG9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WGG9_9STRA) HSP 1 Score: 258 bits (660), Expect = 7.150e-79 Identity = 136/273 (49.82%), Postives = 185/273 (67.77%), Query Frame = 1 Query: 214 IVDVDANLLHADLSNDIDHHIQVASSVGVKQFVVPGSTVEDSRGSLELARRKPNVVFSTAGVHPYHVQGCGSLEDAMASIATLAATEEARCVGECGLDYSEGFPAAELQLPWFERQVELACKLKKPLFLHERAAFVDFSEVL----RRYDASHGLPPCLVHCFTGSEEELIAYIEMG--FFVSVAGGICREKSGAALRAAVKRIPLDRLMVETDAPYLGFSGCRKGHDKP---KKQNPNVPSALPAVVRVVAECLGLPFEEVARATLQNSRQF 1005 + D D NL H DL D+ + A+SVGV + +VPGST+E+S+ ++EL R+ P +F TAGVHPYH + E+ +A++ L E R VGECGLDYS GFPA ELQ WF Q+ LAC+L+KPLFLHER A DF +++ +++D PP +VHCFTG+E EL AY+ G +++ V G IC+++ GAALR V+ +PLDRL++ETDAPY+GF CR+ D+P KKQ PNVPSALP VV+ VA LG +E+ + T N+R+F Sbjct: 64 LFDFDCNLTHDDLKGDVAAVMTQAASVGVTEMLVPGSTLEESQRAIELCRQYPTQLFPTAGVHPYHALASPTTEE-LATLRDLLELGEVRAVGECGLDYSPGFPAPELQKKWFVEQLALACRLRKPLFLHERLAHEDFLKLVDDATKQFDGY--FPPAVVHCFTGNERELQAYLARGDDWYIGVTGFICKKQHGAALREMVRHVPLDRLVLETDAPYMGFPKCRR--DEPNDRKKQYPNVPSALPQVVQAVAAALGRSPQEIGKITKANARRF 331
BLAST of mRNA_E-siliculosus-1a_F_contig107.494.1 vs. uniprot
Match: A0A5D6YB90_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB90_9STRA) HSP 1 Score: 254 bits (649), Expect = 4.000e-77 Identity = 130/271 (47.97%), Postives = 175/271 (64.58%), Query Frame = 1 Query: 214 IVDVDANLLHADLSNDIDHHIQVASSVGVKQFVVPGSTVEDSRGSLELARRKPNVVFSTAGVHPYHVQGCGSLEDAMASIATLAATEEARCVGECGLDYSEGFPAAELQLPWFERQVELACKLKKPLFLHERAAFVDFSEVLRRYDASHG--LPPCLVHCFTGSEEELIAYIEMGFFVSVAGGICREKSGAALRAAVKRIPLDRLMVETDAPYLGFSGCR-KGHDKPKKQNPNVPSALPAVVRVVAECLGLPFEEVARATLQNSRQFFGMA 1017 + D D NL H DL+ + A++ GV + +VPG+T+++SR +L L+R P+ +F+TAGVHPY+ + + + LA E R VGECGLDYS GFP AE Q WF Q+ELAC+L++PLFLHER A DF + A G PP +VHCFTG+E EL AY+ GF++ V G +CR++ GA LR ++ +PL RL++ETDAPY+GF CR + PKKQ PNVPSALP V VA LGL +EVA AT N+R+F ++ Sbjct: 72 LFDFDCNLTHDDLTPLALDAMVRAAAAGVSEMLVPGATLDESRAALTLSRDHPHTLFATAGVHPYNAHAAPETHE-LEELEALAVLPECRAVGECGLDYSPGFPPAEPQREWFRAQLELACRLRQPLFLHERLAHDDFVATVASCQARFGDAFPPAVVHCFTGTERELRAYVARGFYIGVTGFVCRKELGAPLREMLRLVPLQRLVIETDAPYMGFPKCRGREPTDPKKQYPNVPSALPLVAETVAAALGLTAQEVATATRANARRFLRLS 341
BLAST of mRNA_E-siliculosus-1a_F_contig107.494.1 vs. uniprot
Match: A0A075LY60_PHYSO (TatD related DNase n=1 Tax=Phytophthora sojae TaxID=67593 RepID=A0A075LY60_PHYSO) HSP 1 Score: 253 bits (647), Expect = 5.010e-77 Identity = 131/269 (48.70%), Postives = 180/269 (66.91%), Query Frame = 1 Query: 214 IVDVDANLLHADLSNDIDHHIQVASSVGVKQFVVPGSTVEDSRGSLELARRKPNVVFSTAGVHPYHVQGCGSLEDAMASIATLAATEEARCVGECGLDYSEGFPAAELQLPWFERQVELACKLKKPLFLHERAAFVDFSEVLRRYDASHG--LPPCLVHCFTGSEEELIAYIEMG--FFVSVAGGICREKSGAALRAAVKRIPLDRLMVETDAPYLGFSGCRKGHDK-PKKQNPNVPSALPAVVRVVAECLGLPFEEVARATLQNSRQF 1005 + D D NL H DL +++ +Q A +VGVK+ +VPG+T+++S+ ++EL R+ P +F TAGVHPY+ + + ++ + ++ L E R VGECGLDYS FP E Q WF Q+ LAC+LKKPLFLHER A DF +++ A G PP +VHCFTG+EEEL AY+ G +++ V G IC+ K GAAL+ VK +PL+RLM+ETDAPY+GF CR+ PKKQ PNVPSA+P V + VA LG +EVA+ T N+R+F Sbjct: 58 LFDFDCNLTHEDLRDNVAALMQQAEAVGVKEMLVPGATIDESQRAVELCRQHPTKLFPTAGVHPYNARAMPTQQE-LTTLKGLMELPEVRAVGECGLDYSPSFPEPEFQKKWFAEQLLLACELKKPLFLHERLAHQDFIQLIDEATAKAGGYFPPAVVHCFTGNEEELKAYVARGDDWYIGVTGFICK-KQGAALQEMVKHVPLERLMLETDAPYMGFPKCRRAEKSDPKKQYPNVPSAMPLVAQAVATALGRSPQEVAKITRANARRF 324
BLAST of mRNA_E-siliculosus-1a_F_contig107.494.1 vs. uniprot
Match: M4B6D3_HYAAE (Uncharacterized protein n=2 Tax=Hyaloperonospora arabidopsidis TaxID=272952 RepID=M4B6D3_HYAAE) HSP 1 Score: 252 bits (644), Expect = 1.280e-76 Identity = 132/276 (47.83%), Postives = 183/276 (66.30%), Query Frame = 1 Query: 199 DTSSYIVDVDANLLHADLSNDIDHHIQVASSVGVKQFVVPGSTVEDSRGSLELARRKPNVVFSTAGVHPYHVQGCGSLEDAMASIATLAATEEARCVGECGLDYSEGFPAAELQLPWFERQVELACKLKKPLFLHERAAFVDFSEVL----RRYDASHGLPPCLVHCFTGSEEELIAYIEMG--FFVSVAGGICREKSGAALRAAVKRIPLDRLMVETDAPYLGFSGCRKGHDKPK-KQNPNVPSALPAVVRVVAECLGLPFEEVARATLQNSRQF 1005 D ++D D NL H DL ++I+ +Q A+SVGVK+ +VPG+++E+S+ ++EL + P +F TAGVHPY+ Q +E+ + ++ L E+ R VGECGLDYS FP E Q WF Q+ +AC L+KPLFLHER A DF E++ R D PP +VHCFTGSEEEL AY+ G +++ + G IC+ + GAAL+ +K +PLDRL++ETDAPY+GF CR+ + KQ PNVPSA+P V + VA LGL +EVAR T N+R+F Sbjct: 50 DVDLELIDFDCNLTHQDLQHNIESLMQQAASVGVKEMLVPGASIEESQRAIELCSQHPTKLFPTAGVHPYNAQAMPKVEE-LTTLQDLLKLEQVRAVGECGLDYSPSFPEREYQRNWFAEQLAMACALRKPLFLHERQAHHDFIELIDAATRNCDGY--FPPAVVHCFTGSEEELKAYVARGDEWYIGITGFICKPQ-GAALKKMLKHVPLDRLVLETDAPYMGFPKCRRAELTGRNKQYPNVPSAIPLVAQTVASALGLSPQEVARITRANARRF 321
BLAST of mRNA_E-siliculosus-1a_F_contig107.494.1 vs. uniprot
Match: A0A8K1FN21_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FN21_PYTOL) HSP 1 Score: 249 bits (637), Expect = 3.670e-76 Identity = 126/273 (46.15%), Postives = 181/273 (66.30%), Query Frame = 1 Query: 199 DTSSYIVDVDANLLHADLSNDIDHHIQVASSVGVKQFVVPGSTVEDSRGSLELARRKPNVVFSTAGVHPYHVQGCGSLEDAMASIATLAATEEARCVGECGLDYSEGFPAAELQLPWFERQVELACKLKKPLFLHERAAFVDFSEVLRRYDASHG--LPPCLVHCFTGSEEELIAYIEMGFFVSVAGGICREKSGAALRAAVKRIPLDRLMVETDAPYLGFSGCR--KGHDKPKKQNPNVPSALPAVVRVVAECLGLPFEEVARATLQNSRQF 1005 D+ + + D DANL H DL D ++ A+SVGV + +VPG+T+++S ++ L R+ P +F TAGVHPYH + + + + + +AA ++ VGECGLDYS FP A+ Q WF Q+ELAC+L+KPLFLHER A DF ++ A PP +VHCFTG+E+EL+ Y+ F++ V G IC++ GAALR ++ +PL++L++ETDAPY+GF CR + DK KKQ PNVPSALP V VVA+ LG +++A+ T N+R+F Sbjct: 6 DSETVLFDFDANLTHDDLVQDAAAVMERAASVGVTEMLVPGATLDESEATIALCRQHPTNLFPTAGVHPYHAEALPT-DAELERLRGMAAQQDVLAVGECGLDYSPSFPDAKWQKAWFTVQLELACELQKPLFLHERLAHADFLALISECQAKFNGYFPPAVVHCFTGTEDELLEYVRRDFYIGVTGYICKKDRGAALRDMLRHVPLNKLVIETDAPYMGFPKCRSVESADK-KKQYPNVPSALPQVCEVVAQVLGKTPQDIAQITRANARRF 276
BLAST of mRNA_E-siliculosus-1a_F_contig107.494.1 vs. uniprot
Match: A0A6A3Y5D0_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Y5D0_9STRA) HSP 1 Score: 251 bits (641), Expect = 3.930e-76 Identity = 128/269 (47.58%), Postives = 179/269 (66.54%), Query Frame = 1 Query: 214 IVDVDANLLHADLSNDIDHHIQVASSVGVKQFVVPGSTVEDSRGSLELARRKPNVVFSTAGVHPYHVQGCGSLEDAMASIATLAATEEARCVGECGLDYSEGFPAAELQLPWFERQVELACKLKKPLFLHERAAFVDFSEVLRRYDASHG--LPPCLVHCFTGSEEELIAYIEMG--FFVSVAGGICREKSGAALRAAVKRIPLDRLMVETDAPYLGFSGCRKGH-DKPKKQNPNVPSALPAVVRVVAECLGLPFEEVARATLQNSRQF 1005 + D D NL H DL ++ +Q AS+VGVK+ +VPG+T+++S+ ++EL R+ P +F TAGVHPY+ + S ++ + ++ L +E R VGECGLDYS FP E Q WF Q+ +AC+LKKPLFLHER A DF +++ A G PP +VHCFTG+EEEL AY+ G +++ + G IC+ K GAAL+ VK +PL+RL++ETDAPY+GF CR+ KKQ PNVPSA+P V + A LG +EVA+ T N+R+F Sbjct: 58 LFDFDCNLTHEDLRGNVATLMQQASTVGVKEMLVPGATIDESQRAIELCRQHPTKLFPTAGVHPYNARAIPSQQE-LTTLKGLMELQEVRAVGECGLDYSPSFPEPEFQKKWFAEQLSVACELKKPLFLHERLAHEDFIQLIDEATAKSGGYFPPAVVHCFTGTEEELKAYVARGDDWYIGITGFICK-KQGAALQEMVKHVPLERLVLETDAPYMGFPKCRRAEVSDQKKQYPNVPSAMPRVAQAAATALGRSPQEVAKITRANARRF 324
BLAST of mRNA_E-siliculosus-1a_F_contig107.494.1 vs. uniprot
Match: A0A024TGJ1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TGJ1_9STRA) HSP 1 Score: 250 bits (639), Expect = 4.910e-76 Identity = 133/273 (48.72%), Postives = 179/273 (65.57%), Query Frame = 1 Query: 199 DTSSYIVDVDANLLHADLSNDIDHHIQVASSVGVKQFVVPGSTVEDSRGSLELARRKPNVVFSTAGVHPYHVQGCGSLEDAMASIATLAATEEARCVGECGLDYSEGFPAAELQLPWFERQVELACKLKKPLFLHERAAFVDFSEVLRRYDASHGLPPCLVHCFTGSEEELIAYIEMGFFVSVAGGICREKSGAALRA--AVKRIPLDRLMVETDAPYLGFSGCRKGHDKP--KKQNPNVPSALPAVVRVVAECLGLPFEEVARATLQNSRQF 1005 D + + D D N+ H + D +Q A V V Q +VPGST+E+S L LAR+ P+ VF TAGVHPY+ E+ A+++ LAA E VGECGLDYS+GFP+ +LQL WF Q+ LA L+KPLFLHER A F + L + LPP VHCFTG+ +E YI+MGF++ + G +C+E GAAL++ A +PLDRL+VETDAPY+GF GCR G + K+Q PNVP++LP VV+ +A+C+G+ EVAR T +N+RQF Sbjct: 41 DDTVDLFDFDCNVTHPEFKGQEDALVQCARRVRVTQMLVPGSTIEESHECLALARQHPSTVFPTAGVHPYNATKPFDAEE-FATLSVLAANTEIVAVGECGLDYSDGFPSPDLQLSWFGPQLSLAVSLQKPLFLHERLAHEPFLDALTPH--LDNLPPACVHCFTGTTDEAQVYIKMGFYIGITGFVCKEPHGAALQSMLAAGILPLDRLVVETDAPYMGFPGCR-GFESTGGKRQFPNVPTSLPKVVQAIADCVGVSPAEVARITTRNARQF 309 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig107.494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig107.494.1 >prot_E-siliculosus-1a_F_contig107.494.1 ID=prot_E-siliculosus-1a_F_contig107.494.1|Name=mRNA_E-siliculosus-1a_F_contig107.494.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=323bp MEHRSAIGLFLSLAVHVNRPAAALNTRLPIGRGVRALHTTTAAADAGDTSback to top mRNA from alignment at E-siliculosus-1a_F_contig107:7671..12096+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig107.494.1 ID=mRNA_E-siliculosus-1a_F_contig107.494.1|Name=mRNA_E-siliculosus-1a_F_contig107.494.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4426bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:7671..12096+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig107:7671..12096+ >mRNA_E-siliculosus-1a_F_contig107.494.1 ID=mRNA_E-siliculosus-1a_F_contig107.494.1|Name=mRNA_E-siliculosus-1a_F_contig107.494.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1938bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:7671..12096+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |