mRNA_E-siliculosus-1a_F_contig10690.492.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10690.492.1 vs. uniprot
Match: D8LB83_ECTSI (WD-40 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB83_ECTSI) HSP 1 Score: 146 bits (369), Expect = 2.090e-37 Identity = 132/158 (83.54%), Postives = 133/158 (84.18%), Query Frame = -1 Query: 4 KGRSKREERSGLRLSDARGSFIGSSTPIKAAAAAGTGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASSFNYVRRRTSASEEGEVCYDSAGDWASDGSDGLPAVLANRXXXXXXXXXXXXXXXXXXXXXXXXEERARSLRGSDVGANSDPVQEKET 477 KGR+KREERSGLRLSDARGSFIGSSTPIK AA XXXXXXXXXXXXXXXX ASSFNYVRRRTSASEEGEVCYDSAGDWASDGSDGLPAVLANRXXXXXXXXXXXXXXXXXXXXX EERARSLRGSDVGANSDPVQ KET Sbjct: 1142 KGRAKREERSGLRLSDARGSFIGSSTPIKDEMAA--------------EGEXXXXXXXXXXXXXXXXXASSFNYVRRRTSASEEGEVCYDSAGDWASDGSDGLPAVLANRXXXXXXXXXXXXXXXXXXXXXS--EERARSLRGSDVGANSDPVQGKET 1283
BLAST of mRNA_E-siliculosus-1a_F_contig10690.492.1 vs. uniprot
Match: A0A6H5KB05_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB05_9PHAE) HSP 1 Score: 132 bits (333), Expect = 1.430e-32 Identity = 137/186 (73.66%), Postives = 144/186 (77.42%), Query Frame = -1 Query: 4 RRKSDGGGRARSTSGEGSGTKGRSKREERSGLRLSDARGSFIGSSTPIKAAAAAGTGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASSFN--------YVRRRTSASEEGEVCYDSAGDWASDGSDGLPAVLANRXXXXXXXXXXXXXXXXXXXXXXXXEERARSLRGSDVGANSDPVQEKET 537 RRKSDGG RAR+TSGEGSGTKGR K+EERSGLRLSDARGSFIGSS PIKAA XXXXXXXXXXXXXXXXXXXXXXXXXXXX +V SAS+E EVCYDSAGDWASDGSDGLPAVLAN+ XXXXXXXXXXXXXX EERARS +GSDV ANSDPVQEKE+ Sbjct: 1157 RRKSDGGWRARATSGEGSGTKGRGKQEERSGLRLSDARGSFIGSSAPIKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVXXXXSASQEEEVCYDSAGDWASDGSDGLPAVLANQRRSATAXXXXXXXXXXXXXXWGS-EERARSWKGSDVDANSDPVQEKES 1341 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10690.492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10690.492.1 >prot_E-siliculosus-1a_F_contig10690.492.1 ID=prot_E-siliculosus-1a_F_contig10690.492.1|Name=mRNA_E-siliculosus-1a_F_contig10690.492.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=179bp LRFFLLDRVAVCTDVASSQRSGTFFATPGRRRPVRRRWRRLVVRRGGPPPback to top mRNA from alignment at E-siliculosus-1a_F_contig10690:118..656+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10690.492.1 ID=mRNA_E-siliculosus-1a_F_contig10690.492.1|Name=mRNA_E-siliculosus-1a_F_contig10690.492.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=539bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10690:118..656+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10690:118..656+ >mRNA_E-siliculosus-1a_F_contig10690.492.1 ID=mRNA_E-siliculosus-1a_F_contig10690.492.1|Name=mRNA_E-siliculosus-1a_F_contig10690.492.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1074bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10690:118..656+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |