Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 648 |
| Model size | 648 |
| Exons | 2 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927569.9724357-CDS-E-siliculosus-1a_F_contig1069:16335..16512 | 1622927569.9724357-CDS-E-siliculosus-1a_F_contig1069:16335..16512 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1069 16336..16512 - |
| 1696318590.6004372-CDS-E-siliculosus-1a_F_contig1069:16335..16512 | 1696318590.6004372-CDS-E-siliculosus-1a_F_contig1069:16335..16512 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1069 16336..16512 - |
| 1622927569.9830377-CDS-E-siliculosus-1a_F_contig1069:16864..17335 | 1622927569.9830377-CDS-E-siliculosus-1a_F_contig1069:16864..17335 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1069 16865..17335 - |
| 1696318590.6081054-CDS-E-siliculosus-1a_F_contig1069:16864..17335 | 1696318590.6081054-CDS-E-siliculosus-1a_F_contig1069:16864..17335 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1069 16865..17335 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1069.489.1 >prot_E-siliculosus-1a_F_contig1069.489.1 ID=prot_E-siliculosus-1a_F_contig1069.489.1|Name=mRNA_E-siliculosus-1a_F_contig1069.489.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=216bp
VGGDDIFEAQTGMGGGMERSALLLGSPSLSWPQQQQHQHQQPALDPLRTE
QQLLADSPVLAGVPGLGLDQGQRLDGIGQSRDGGYGGSFSTGMTATFGGM
DVMSAGGVATLGGVGSDGGVSVPPQQVLVGRVGQGEAAGSQQPSQPQAAP
LFFQQQHLQHLDFLTDAQQQQQQQQLQQQPRLATQVSTPEFRNMSVTVPF
DGSIDGSEGGGGGSGS back to topmRNA from alignment at E-siliculosus-1a_F_contig1069:16336..17335- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1069.489.1 ID=mRNA_E-siliculosus-1a_F_contig1069.489.1|Name=mRNA_E-siliculosus-1a_F_contig1069.489.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1000bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1069:16336..17335- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTTGGCGGTGACGACATCTTCGAAGCGCAGACGGGAATGGGCGGCGGCAT
GGAGCGATCCGCGTTGTTGCTCGGCTCGCCGTCCTTGTCGTGGCCTCAAC
AACAGCAACACCAACACCAACAGCCTGCACTAGACCCGCTTCGAACAGAG
CAGCAGCTTCTTGCGGATTCTCCCGTATTGGCGGGCGTGCCTGGGCTAGG
GCTAGACCAAGGCCAGCGCCTGGACGGCATCGGGCAGAGCAGGGACGGGG
GTTACGGCGGTTCGTTTTCGACGGGGATGACAGCAACGTTTGGTGGGATG
GATGTGATGAGCGCGGGCGGGGTGGCGACGTTGGGTGGAGTTGGTAGCGA
TGGAGGAGTTTCCGTGCCCCCGCAACAGGTGCTTGTGGGGCGTGTGGGTC
AAGGGGAAGCGGCCGGGAGTCAGCAGCCGTCGCAGCCGCAGGCAGCGCCC
CTGTTTTTTCAGCAACAGCACGTGAGGATTCGGTTGTTGAGTGATACGGA
TATGTAGTCTTATACCACCCAATTTGGTTCTCGACTCACATAGGTTTAAG
CTGTTCGACTCTTTTCATGGCGGTGCAACACGTTGTTGCCCCACTCCCTT
GGGAGTATCGCCTACCTCATCGGCGAAGCCCCGTTCCAGTGACATTCTGG
GGATGCGATGCAAGGGTCCAGCAACGACACACGACAGCCATAGTGTTACT
TCTCCTCCATCTGTTGTTGTGGTTGCATCGTCGTCTTTTGCTCGGTTTCC
CGTGCAAGCTTTTTGCGATTCTGACTACGCACTATTAATTGTCTTCTGTC
TGCCCTTGTCTCCTTTCGCGCAGCTTCAGCATCTCGACTTCTTGACGGAT
GCTCAGCAGCAACAGCAGCAGCAGCAACTGCAGCAACAACCCCGCCTAGC
AACGCAGGTGTCAACACCGGAGTTCCGAAACATGAGCGTAACGGTTCCAT
TCGACGGCAGCATCGACGGTAGCGAAGGTGGCGGCGGCGGCAGCGGCAGC
back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1069:16336..17335- >mRNA_E-siliculosus-1a_F_contig1069.489.1 ID=mRNA_E-siliculosus-1a_F_contig1069.489.1|Name=mRNA_E-siliculosus-1a_F_contig1069.489.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1296bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1069:16336..17335- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTTGGCGGTGACGACATCTTCGAAGCGCAGACGGGAATGGGCGGCGGCAT
GGAGCGATCCGCGTTGTTGCTCGGCTCGCCGTCCTTGTCGTGGCCTCAAC
AACAGCAACACCAACACCAACAGCCTGCACTAGACCCGCTTCGAACAGAG
CAGCAGCTTCTTGCGGATTCTCCCGTATTGGCGGGCGTGCCTGGGCTAGG
GCTAGACCAAGGCCAGCGCCTGGACGGCATCGGGCAGAGCAGGGACGGGG
GTTACGGCGGTTCGTTTTCGACGGGGATGACAGCAACGTTTGGTGGGATG
GATGTGATGAGCGCGGGCGGGGTGGCGACGTTGGGTGGAGTTGGTAGCGA
TGGAGGAGTTTCCGTGCCCCCGCAACAGGTGCTTGTGGGGCGTGTGGGTC
AAGGGGAAGCGGCCGGGAGTCAGCAGCCGTCGCAGCCGCAGGCAGCGCCC
CTGTTTTTTCAGCAACAGCACGTTGGCGGTGACGACATCTTCGAAGCGCA
GACGGGAATGGGCGGCGGCATGGAGCGATCCGCGTTGTTGCTCGGCTCGC
CGTCCTTGTCGTGGCCTCAACAACAGCAACACCAACACCAACAGCCTGCA
CTAGACCCGCTTCGAACAGAGCAGCAGCTTCTTGCGGATTCTCCCGTATT
GGCGGGCGTGCCTGGGCTAGGGCTAGACCAAGGCCAGCGCCTGGACGGCA
TCGGGCAGAGCAGGGACGGGGGTTACGGCGGTTCGTTTTCGACGGGGATG
ACAGCAACGTTTGGTGGGATGGATGTGATGAGCGCGGGCGGGGTGGCGAC
GTTGGGTGGAGTTGGTAGCGATGGAGGAGTTTCCGTGCCCCCGCAACAGG
TGCTTGTGGGGCGTGTGGGTCAAGGGGAAGCGGCCGGGAGTCAGCAGCCG
TCGCAGCCGCAGGCAGCGCCCCTGTTTTTTCAGCAACAGCACCTTCAGCA
TCTCGACTTCTTGACGGATGCTCAGCAGCAACAGCAGCAGCAGCAACTGC
AGCAACAACCCCGCCTAGCAACGCAGGTGTCAACACCGGAGTTCCGAAAC
ATGAGCGTAACGGTTCCATTCGACGGCAGCATCGACGGTAGCGAAGGTGG
CGGCGGCGGCAGCGGCAGCCTTCAGCATCTCGACTTCTTGACGGATGCTC
AGCAGCAACAGCAGCAGCAGCAACTGCAGCAACAACCCCGCCTAGCAACG
CAGGTGTCAACACCGGAGTTCCGAAACATGAGCGTAACGGTTCCATTCGA
CGGCAGCATCGACGGTAGCGAAGGTGGCGGCGGCGGCAGCGGCAGC back to top
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