Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Start | 1 |
Stop | 0 |
Cds size | 159 |
Model size | 178 |
Exons | 2 |
Ec32 ortholog | Ec-12_000090.1 |
Ec32 ortholog description | Hypothetical protein |
Hectar predicted targeting category | no signal peptide or anchor |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622927570.2526822-UTR-E-siliculosus-1a_F_contig1069:14291..14309 | 1622927570.2526822-UTR-E-siliculosus-1a_F_contig1069:14291..14309 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1069 14292..14309 + |
1696318590.7126482-UTR-E-siliculosus-1a_F_contig1069:14291..14309 | 1696318590.7126482-UTR-E-siliculosus-1a_F_contig1069:14291..14309 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1069 14292..14309 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622927570.2650378-CDS-E-siliculosus-1a_F_contig1069:14309..14340 | 1622927570.2650378-CDS-E-siliculosus-1a_F_contig1069:14309..14340 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1069 14310..14340 + |
1696318590.7203016-CDS-E-siliculosus-1a_F_contig1069:14309..14340 | 1696318590.7203016-CDS-E-siliculosus-1a_F_contig1069:14309..14340 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1069 14310..14340 + |
1622927570.2776759-CDS-E-siliculosus-1a_F_contig1069:14495..14623 | 1622927570.2776759-CDS-E-siliculosus-1a_F_contig1069:14495..14623 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1069 14496..14623 + |
1696318590.727739-CDS-E-siliculosus-1a_F_contig1069:14495..14623 | 1696318590.727739-CDS-E-siliculosus-1a_F_contig1069:14495..14623 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1069 14496..14623 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1069.488.1 >prot_E-siliculosus-1a_F_contig1069.488.1 ID=prot_E-siliculosus-1a_F_contig1069.488.1|Name=mRNA_E-siliculosus-1a_F_contig1069.488.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=53bp
MERKEASRRRIKCTVLLSRVHEHMSAGGFPRGTNMHHRRRTSQRLWARAS YVR back to topmRNA from alignment at E-siliculosus-1a_F_contig1069:14292..14623+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1069.488.1 ID=mRNA_E-siliculosus-1a_F_contig1069.488.1|Name=mRNA_E-siliculosus-1a_F_contig1069.488.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=332bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1069:14292..14623+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) GTGGGGGGCTTTGTTGAGATGGAGAGGAAGGAAGCATCGAGAAGAAGGAG
TGAAAGACAATCGTAAAAAGGCACACACATGATCTTGTTGTGCACGAAAA
CGCACGGTTCACGCCGGCACCGGAACGAAACTTCCTCAGACAGCCTTTTG
TAAGTGTACGTTGTTGCCTTTCCTCTCCTTGCGCCTCGTCTCCTAGGCAT
GTAGTAAAATGTACCGTTCTTTTGTCTCGAGTACACGAACACATGTCGGC
CGGCGGGTTCCCAAGAGGAACCAACATGCACCACCGTCGCCGAACTAGCC
AGCGCCTTTGGGCAAGGGCATCATACGTGCGT back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1069:14292..14623+ >mRNA_E-siliculosus-1a_F_contig1069.488.1 ID=mRNA_E-siliculosus-1a_F_contig1069.488.1|Name=mRNA_E-siliculosus-1a_F_contig1069.488.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=318bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1069:14292..14623+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) ATGGAGAGGAAGGAAGCATCGAGAAGAAGGAATGGAGAGGAAGGAAGCAT CGAGAAGAAGGATAAAATGTACCGTTCTTTTGTCTCGAGTACACGAACAC ATGTCGGCCGGCGGGTTCCCAAGAGGAACCAACATGCACCACCGTCGCCG AACTAGCCAGCGCCTTTGGGCAAGGGCATCATACGTGCGTTAAAATGTAC CGTTCTTTTGTCTCGAGTACACGAACACATGTCGGCCGGCGGGTTCCCAA GAGGAACCAACATGCACCACCGTCGCCGAACTAGCCAGCGCCTTTGGGCA AGGGCATCATACGTGCGT back to top
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