mRNA_E-siliculosus-1a_F_contig10680.484.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10680.484.1 vs. uniprot
Match: A0A6H5JXW2_9PHAE (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXW2_9PHAE) HSP 1 Score: 140 bits (353), Expect = 1.300e-37 Identity = 72/87 (82.76%), Postives = 73/87 (83.91%), Query Frame = 1 Query: 1 AAPAMSLNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGLA*------------PRTSVVISSEPLCRSTKSWELVPRNSMVIVEG 225 AAPAMSLNFCVTDGRHIVCSRYRSHARQ+PPSLFVLAGAG A PRTSVVISSEPLCRSTKSWELVPRNSMVIVEG Sbjct: 231 AAPAMSLNFCVTDGRHIVCSRYRSHARQNPPSLFVLAGAGFACDEAGCLRQTATEPRTSVVISSEPLCRSTKSWELVPRNSMVIVEG 317
BLAST of mRNA_E-siliculosus-1a_F_contig10680.484.1 vs. uniprot
Match: D8LKF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF2_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 1.710e-19 Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 Query: 1 AAPAMSLNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGLA 126 AAPAMSLNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGLA Sbjct: 237 AAPAMSLNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGLA 278
BLAST of mRNA_E-siliculosus-1a_F_contig10680.484.1 vs. uniprot
Match: A0A835ZAJ1_9STRA (Nucleophile aminohydrolase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAJ1_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 2.750e-12 Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 1 Query: 10 AMSLNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGLA*PRTS------------VVISSEPLC-RSTKSWELVPRNSMVI 216 A SLN VT+G H+V SRYR+ + PPSL++ G+GLA + VVISSEPLC RS + W +VP+N+MV+ Sbjct: 206 ASSLNMAVTNGLHVVVSRYRNSPTEQPPSLYMSHGSGLAVGDDNCLRFARPHGVGGVVISSEPLCSRSLERWSIVPKNTMVV 287
BLAST of mRNA_E-siliculosus-1a_F_contig10680.484.1 vs. uniprot
Match: UPI0019B45B5D (Class II glutamine amidotransferase n=1 Tax=bacterium TaxID=1869227 RepID=UPI0019B45B5D) HSP 1 Score: 54.7 bits (130), Expect = 5.970e-7 Identity = 33/80 (41.25%), Postives = 43/80 (53.75%), Query Frame = 1 Query: 19 LNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGLA*P--RT----------SVVISSEPLCRSTKSWELVPRNSMVIVE 222 LNFCV++GR IV +RY ++ R P SL+ + G RT +VVISSEP W V RNSM+IV+ Sbjct: 196 LNFCVSNGRSIVATRYTTNPRVQPASLYYMFGRDYVAEGERTYMTPDEGQSEAVVISSEPFTSHKSEWIKVTRNSMIIVD 275
BLAST of mRNA_E-siliculosus-1a_F_contig10680.484.1 vs. uniprot
Match: A0A316V2F2_9BASI (N-terminal nucleophile aminohydrolase n=1 Tax=Jaminaea rosea TaxID=1569628 RepID=A0A316V2F2_9BASI) HSP 1 Score: 52.4 bits (124), Expect = 4.390e-6 Identity = 29/80 (36.25%), Postives = 39/80 (48.75%), Query Frame = 1 Query: 19 LNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGLA*PRTS-------------VVISSEPLCRSTKSWELVPRNSMVIV 219 +NFCVTDG+ IVC+RY S + SL+ +G VV++SEPL W VP N+M+IV Sbjct: 267 MNFCVTDGQSIVCTRYVSSLHDEAASLYFSSGTSFYEREKGRFRMRKEDRRQNIVVVASEPLTFEKADWMEVPTNTMIIV 346
BLAST of mRNA_E-siliculosus-1a_F_contig10680.484.1 vs. uniprot
Match: A0A316U354_9BASI (N-terminal nucleophile aminohydrolase n=1 Tax=Pseudomicrostroma glucosiphilum TaxID=1684307 RepID=A0A316U354_9BASI) HSP 1 Score: 50.4 bits (119), Expect = 2.090e-5 Identity = 29/80 (36.25%), Postives = 41/80 (51.25%), Query Frame = 1 Query: 19 LNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGA-------GLA*PRTS------VVISSEPLCRSTKSWELVPRNSMVIV 219 +NFCVTDG I+C+RY S + SL+ +G G+ R VV++SEPL W VP N+M+I+ Sbjct: 233 MNFCVTDGLSILCTRYVSSLHDEAASLYFSSGTSFYEREKGMFRMRKEDRRQNIVVVASEPLTFQKADWMEVPTNTMIII 312
BLAST of mRNA_E-siliculosus-1a_F_contig10680.484.1 vs. uniprot
Match: A0A1Y1YQA9_9FUNG (N-terminal nucleophile aminohydrolase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YQA9_9FUNG) HSP 1 Score: 50.1 bits (118), Expect = 2.720e-5 Identity = 25/80 (31.25%), Postives = 41/80 (51.25%), Query Frame = 1 Query: 19 LNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGLA*PRTS-------------VVISSEPLCRSTKSWELVPRNSMVIV 219 +NF VTDG+ ++C+RY S A Q+ SL+ +G + VV++SEPL W +P N++V++ Sbjct: 199 MNFAVTDGKTVICTRYISSATQEAASLYFSSGTRFESYKPGHYRMIKADKREDIVVVASEPLTFEQADWITIPTNTLVVI 278
BLAST of mRNA_E-siliculosus-1a_F_contig10680.484.1 vs. uniprot
Match: A0A0M8MKW3_9BASI (N-terminal nucleophile aminohydrolase n=1 Tax=Malassezia pachydermatis TaxID=77020 RepID=A0A0M8MKW3_9BASI) HSP 1 Score: 50.1 bits (118), Expect = 2.800e-5 Identity = 29/80 (36.25%), Postives = 39/80 (48.75%), Query Frame = 1 Query: 19 LNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGL------------A*PRTSVV-ISSEPLCRSTKSWELVPRNSMVIV 219 LNFCVTDG+ +VC+RY S + SLF G A R +V I+SEPL W +P N++V + Sbjct: 217 LNFCVTDGKSVVCTRYVSSKTDEAASLFFSTGTSFYEHSKGEYRMVKAGRRQKIVMIASEPLTFEQADWMEIPSNTLVCI 296
BLAST of mRNA_E-siliculosus-1a_F_contig10680.484.1 vs. uniprot
Match: A0A0C9T6T1_PLICR (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Plicaturopsis crispa FD-325 SS-3 TaxID=944288 RepID=A0A0C9T6T1_PLICR) HSP 1 Score: 50.1 bits (118), Expect = 2.800e-5 Identity = 23/50 (46.00%), Postives = 31/50 (62.00%), Query Frame = 1 Query: 10 AMSLNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGLA*PRTSVVISSE 159 A SLN C TDG +V RYR+HA + PPSL+V AG+ R V + ++ Sbjct: 251 ANSLNLCTTDGEQMVAVRYRNHATEQPPSLYVSTRAGVVLNRKFVNVEND 300
BLAST of mRNA_E-siliculosus-1a_F_contig10680.484.1 vs. uniprot
Match: A0A2T9ZL54_9FUNG (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Smittium megazygosporum TaxID=133381 RepID=A0A2T9ZL54_9FUNG) HSP 1 Score: 49.7 bits (117), Expect = 3.670e-5 Identity = 30/80 (37.50%), Postives = 42/80 (52.50%), Query Frame = 1 Query: 19 LNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGA--------GLA*PRT-----SVVISSEPLCRSTKSWELVPRNSMVIV 219 LNF VTDG +VC+RY S + SLF +G+ G R SVVI+SEPL W ++P N++++V Sbjct: 199 LNFAVTDGDTVVCTRYISSCTLEAASLFFSSGSEFKSEIGGGYRMIRANKRDKSVVIASEPLTFERNDWLIIPTNTLLVV 278 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10680.484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10680.484.1 >prot_E-siliculosus-1a_F_contig10680.484.1 ID=prot_E-siliculosus-1a_F_contig10680.484.1|Name=mRNA_E-siliculosus-1a_F_contig10680.484.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=39bp MSLNFCVTDGRHIVCSRYRSHARQDPPSLFVLAGAGLA*back to top mRNA from alignment at E-siliculosus-1a_F_contig10680:1669..2329- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10680.484.1 ID=mRNA_E-siliculosus-1a_F_contig10680.484.1|Name=mRNA_E-siliculosus-1a_F_contig10680.484.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=661bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10680:1669..2329- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10680:1669..2329- >mRNA_E-siliculosus-1a_F_contig10680.484.1 ID=mRNA_E-siliculosus-1a_F_contig10680.484.1|Name=mRNA_E-siliculosus-1a_F_contig10680.484.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=234bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10680:1669..2329- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |