mRNA_E-siliculosus-1a_F_contig1067.478.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1067.478.1 vs. uniprot
Match: A0A6H5L4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M0_9PHAE) HSP 1 Score: 2061 bits (5340), Expect = 0.000e+0 Identity = 1280/1545 (82.85%), Postives = 1311/1545 (84.85%), Query Frame = 1 Query: 415 MDVLLKICRDQGRANSLNPADFDSSISAIANLPVKQFMTAAKDGWGPYFRNLHSKMRKETTARSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKVTNGLHHMVRSADVAXXXXXXXXXXXXSEGDNSDGLAASRARAAKRQAEEMVIRRMGVRLQALWQELKIPDPDRAYVTAAYLDAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSGPTSENVNRELTRQIRLLLEHRAATVKVLRSVNARESRLCEVEQALQAFQWHRGLDTDALGVVVSLAGLRDASLDVIRAVEEWRTNLWQPRAFCWRGVNYLEKMSQDTIFLRSPVGKSLLASVGLEAKDMT----------------------FVLFPSGNGGGAPSAIPGDSSTCGSELSDGERDTEGDVLRPPPAIVRLTPKVELVSAYRARYFEQSPVVGAGGRPGRESRDVGGERGRLKSTAAAATAAMEAVVVQEAALQRRVEAERVRLATKGCFVPLLRWLPGDSRNAAPKGKRXXXXXXXXXXXXXXXXXXXXXGAESETHAAKHVGDKFAHDDGRSGATAVRDVSDSAAIPPDPLTGGELPLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFRGSVSDGAQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEKGRASLLHTEGVRSQKQPARVEKGGHDQTQSQSEGPQAGQGSTAEVEGRSAFYENGVGEQTKMKNPLAPSFRLETSLHPPGAEEESRSETDIAERSACTVGAEARAGENGCLKLVATSVCGVGSAGIPVGGVSSGDGGDRDTDKPSIVPGELRQEGIVDEERSVAPSVCYDDDFEEDAEGYSLSDSERSGEGDSANFGESLNGSISSDDAKDACRDQRIAHTTEEAGAAIPCGEGRQNPVVGGNNVLEEHQRQQQLVEERETVAATAALRIQRSVRAWLRRRGRLRNTKPDEKEGPQESAKEGKQEWLDAWRARRHSQVRQAQRPEEIQEEAAIRIQTTVRGSLASRQVEELRRELHTRRMTATLKIQAFVRRRRARRNTAAVNRHEISENADLRQQQEAEPDPELAGVGVCRGTARQREEEILAVSSEFDLAEAATRSDRSARTIQKAVRRRLSSGNTTSKADGLPAMEVQGQPNTLEEEAQGQPDAGKRGDGPGAVLVNRRGSGDGSSIPSQQAPVVAAESSSPVVRAGDELGSPSSSAVVDGTPSSTPASGADGLHARLSDADGENNQSDVAESAFVEAGLPSTSLPSEDPAESETADGAAG-NLSQTLHSREGGNSQPEGASSRSPLPSPTTPWPEAAERGQQKEDHQPRQAEGGGEAAVSLPPSSDTACPPTLGPTVDVLVGSLPVDTDTSADAMMTTVVGTHAGGGAESLGFSAVGLSPVPERQALVAVAASASEYGSEDLDFDALSSSPGGSSRGGGSRGEEENAGVAARVATRSSDVTTGEKVEEPTESRGIERVAAXXXXXXXGAAAEKNPAGDIEPAGLAAAEVTTTKEVERGGTQSTEDGSDNSSVVSLSVSSGS 4980
MDVLLKICRDQGRANSLNPADFDSSISAIANLPVKQFM AAKDGWGPYFRNLHSKM ETTARS XXXXXXXXXXXXXXX SKVTN LHHMVRSADVA XXXXXXXXXX DGLAASRARAAKRQAEEMVIRRMGVRLQALWQELKIP PDRAYVTAAYL GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSGPT+ENVNRELTRQIRLLLEHRAATVKVLRSVNARESRLCEVEQALQAFQWHRGLDTDALGVVVSLAGLRDASLDV+RAVEEWRTNLWQPRAFCWRGVNYLEKMSQDTIFLRSPVGKSLLASVGLEA+DM FVLFPSGNGG APSAIPGDSSTCGSELSDGER TEGDVLRPPP IVRLTPK ELVSAYRARYFEQSPVVGAGGR G ES DV GERGRLKSTAAAATAAMEAVVVQEAALQRRV+AERVRLATKGCFVPLLRWLPGDSRN APKGKRXXXXXXXXXXXXXXXXXXXXXGAES+THAAKHVGD F HDDGRSGATAVRDV DSAAIPPDPLTG LFRGSV D AQQ+ XXXXXXXXXXX DEKG+A LLHTEGVRSQKQP+RVE+GGHDQTQSQSEGPQAGQGSTAEVE RSAFYENGVGEQTKM NPLAPSFRLETSLHPPGAEEESRSETDIA RSACTVGA+ARAGEN CLKLVATSVC VGSAGIPVGGVSSG+ GD DT +P IVPGELRQEGIVDE+RSVAPSVCYDDDFE+DAEG SLSDSERSGEG A FGESLNGSISSDDAKDA RDQ +AHTTEEAG AI CGE RQNPVVG NNVLEEHQRQQQLVEERE VAATAALRIQRSVRAWL RRGRLRNTKPDE EGPQ +AKEGKQEWLDAWRARRH QVRQAQRPEEIQE AAIRIQTTVR LASRQVEEL RELH R+M ATLKIQAFV RRRARRN AAVNRHEISENADLRQQQEAEPDPEL GVGVCRGTARQ EEE LAVSSEFDLAEAATRSDRSARTIQKAVRRRLSSGN TS ADGLPAM+VQGQPNTLEE+AQGQPD GKRGDGPGAVLVNR GSGDGS IPSQQAP VAAESSSP RAGDEL SP SSAVVD TPSST AS ADGL ARLSDADGEN+Q DVAESAFVEAGLPSTSLPSEDPA+SETAD AAG NLSQ LHSREGGN QPEG SSRSPLPSPTTP E ERGQQ++DHQPRQAEGGGE AV+LPPSS TA PP+LGPTVDVLV SLP+DTDTSADAMMTTVVGTHAGGGAESLGFSAVGLSPVPER ALVAVAASASEYGSEDLDFDALS SPGGSSRGG SR E G A+VAT VTTGE+VEEPTESRGIERVA+ GAAAEK PAG+IEP GLAA E T KEV+RGGTQ TEDGSDNSSVVSLSVSSGS
Sbjct: 1 MDVLLKICRDQGRANSLNPADFDSSISAIANLPVKQFMAAAKDGWGPYFRNLHSKM--ETTARSTITAKRMNRPXXXXXXXXXXXXXXXLPLPRRASSSGATKDEKTSNRPYSKVTNDLHHMVRSADVASSXXXXXXXXXXXXXXXXDGLAASRARAAKRQAEEMVIRRMGVRLQALWQELKIPGPDRAYVTAAYL--GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSGPTNENVNRELTRQIRLLLEHRAATVKVLRSVNARESRLCEVEQALQAFQWHRGLDTDALGVVVSLAGLRDASLDVVRAVEEWRTNLWQPRAFCWRGVNYLEKMSQDTIFLRSPVGKSLLASVGLEAEDMVSRLVSRKRYRGQPPQVFGSASMFVLFPSGNGGVAPSAIPGDSSTCGSELSDGERGTEGDVLRPPPTIVRLTPKAELVSAYRARYFEQSPVVGAGGRSGGESGDVRGERGRLKSTAAAATAAMEAVVVQEAALQRRVKAERVRLATKGCFVPLLRWLPGDSRNPAPKGKRXXXXXXXXXXXXXXXXXXXXXGAESKTHAAKHVGDSFKHDDGRSGATAVRDVPDSAAIPPDPLTGA-----------------------------------GASLFRGSVPDSAQQERLTVSREGDGRQEEDREXXXXXXXXXXXQDEKGQAPLLHTEGVRSQKQPSRVEEGGHDQTQSQSEGPQAGQGSTAEVEDRSAFYENGVGEQTKMTNPLAPSFRLETSLHPPGAEEESRSETDIARRSACTVGAKARAGENECLKLVATSVCRVGSAGIPVGGVSSGECGDGDTGQPWIVPGELRQEGIVDEQRSVAPSVCYDDDFEQDAEGNSLSDSERSGEGGCAKFGESLNGSISSDDAKDARRDQGVAHTTEEAGVAISCGEERQNPVVGDNNVLEEHQRQQQLVEEREIVAATAALRIQRSVRAWLCRRGRLRNTKPDEIEGPQGNAKEGKQEWLDAWRARRHFQVRQAQRPEEIQEGAAIRIQTTVREGLASRQVEELPRELHARKMAATLKIQAFVCRRRARRNPAAVNRHEISENADLRQQQEAEPDPELTGVGVCRGTARQGEEETLAVSSEFDLAEAATRSDRSARTIQKAVRRRLSSGNITSNADGLPAMQVQGQPNTLEEKAQGQPDVGKRGDGPGAVLVNRCGSGDGSIIPSQQAPAVAAESSSPTFRAGDELDSPFSSAVVDETPSSTQASSADGLDARLSDADGENHQPDVAESAFVEAGLPSTSLPSEDPADSETADDAAGGNLSQKLHSREGGNLQPEGTSSRSPLPSPTTPRSEVTERGQQEKDHQPRQAEGGGEGAVALPPSSATAYPPSLGPTVDVLVDSLPMDTDTSADAMMTTVVGTHAGGGAESLGFSAVGLSPVPERHALVAVAASASEYGSEDLDFDALSWSPGGSSRGGASRSEXXXXGGVAQVATXXXVVTTGEEVEEPTESRGIERVASPVAAAVAGAAAEKKPAGEIEPVGLAAPEAATAKEVQRGGTQCTEDGSDNSSVVSLSVSSGS 1506
BLAST of mRNA_E-siliculosus-1a_F_contig1067.478.1 vs. uniprot
Match: D7FNH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNH8_ECTSI) HSP 1 Score: 1718 bits (4449), Expect = 0.000e+0 Identity = 1141/1524 (74.87%), Postives = 1157/1524 (75.92%), Query Frame = 1 Query: 415 MDVLLKICRDQGRANSLNPADFDSSISAIANLPVKQFMTAAKDGWGPYFRNLHSKMRKETTARSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKVTNGLHHMVRSADVAXXXXXXXXXXXXSEGDNSDGLAASRARAAKRQAEEMVIRRMGVRLQALWQELKIPDPDRAYVTAAYLDAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSGPTSENVNRELTRQIRLLLEHRAATVKVLRSVNARESRLCEVEQALQAFQWHRGLDTDALGVVVSLAGLRDASLDVIRAVEEWRTNLWQPRAFCWRGVNYLEKMSQDTIFLRSPVGKSLLASVGLEAKDMTFVLFPSGNGGGAPSAIPGDSSTCGSELSDGERDTEGDVLRPPPAIVRLTPKVELVSAYRARYFEQSPVVGAGGRPGRESRDVGGERGRLKSTAAAATAAMEAVVVQEAALQRRVEAERVRLATKGCFVPLLRWLPGDSRNAAPKGKRXXXXXXXXXXXXXXXXXXXXXGAESETHAAKHVGDKFAHDDGRSGATAVRDVSDSAAIPPDPLTGGELPLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFRGSVSDGAQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEKGRASLLHTEGVRSQKQPARVEKGGHDQTQSQSEGPQAGQGSTAEVEGRSAFYENGVGEQTKMKNPLAPSFRLETSLHPPGAEEESRSETDIAERSACTVGAEARAGENGCLKLVATSVCGVGSAGIPVGGVSSGDGGDRDTDKPSIVPGELRQEGIVDEERSVAPSVCYDDDFEEDAEGYSLSDSERSGEGDSANFGESLNGSISSDDAKDACRDQRIAHTTEEAGAAIPCGEGRQNPVVGGNNVLEEHQRQQQLVEERETVAATAALRIQRSVRAWLRRRGRLRNTKPDEKEGPQESAKEGKQEWLDAWRARRHSQVRQAQRPEEIQEEAAIRIQTTVRGSLASRQVEELRRELHTRRMTATLKIQAFVRRRRARRNTAAVNRHEISENADLRQQQEAEPDPELAGVGVCRGTARQREEEILAVSSEFDLAEAATRSDRSARTIQKAVRRRLSSGNTTSKADGLPAMEVQGQPNTLEEEAQGQPDAGKRGDGPGAVLVNRRGSGDGSSIPSQQAPVVAAESSSPVVRAGDELGSPSSSAVVDGTPSSTPASGADGLHARLSDADGENNQSDVAESAFVEAGLPSTSLPSEDPAESETADGAAG-NLSQTL-HSREGGNSQPEGASSRSPLPSPTTPWPEAAERGQQKEDHQPRQAEGGGEAAVSLPPSSDTACPPTLGPTVDVLVGSLPVDTDTSADAMMTTVVGTHAGGGAESLGFSAVGLSPVPERQALVAVAASASEYGSEDLDFDALSSSPGGSSRGGGSRGEEENAGVAARVATRSSDVTTGEKVEEPTESRGIERVAAXXXXXXXGAAAEKNPAGDIEPAGLAAAEVTTTKEVERGGTQSTEDGSDNSSVVSLSVSSGS 4980
MDVLLKICRDQGRANSLNPADFDSSISAIANLPVKQFMTAAKDGWGPYFRNLHS MRKETTARSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX V N LHHMVRS XXXXXXXXXXXX DGLAASRARAAKRQAEEMVIRRMGVRLQALWQELKIPDPDRAYVTAAYLDAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSGPTSENVNRELTRQIRLLLEHRAATVKVLR VNARESRLCEVEQALQAFQWHRGLDTDALGVVVSLAGLRDASLDV+RAVEEWRTNLWQPRAFCWRGVNYLEKM QDTIFLRSPVG+SLLASVGLEAKDMTFVL+PSGNGGGAPSAIPGDSSTCGSELSDGERDT+GDVLRPPPAIVRLTPK ELVSAYRARYFEQSPVVGAGGRPG ES DVGGERGRLKSTAAAATAAMEAVVVQEAALQRRVEAERVRLATKGCFVPLLRWLPGDSRN APKGKR XXXXXXXXXXX GAESETHAAK V D FAH+DGRSG AVRDVS SAAIPPDPLTGG AEEESRSETDIA RSACTVGAEARAGENGCLK+VATS CGVGSAGIPVGGVSSGD GD DTDKPSIVPGELRQEGIVDEERSVAPSVCYDDDFEEDAEGYSLSDSE SGEG SA+FGE LNGSISSDDAKDA RDQ +AHTTEE GAAI CGEGRQNPVVGGNNVL EHQRQQQLVEERETVAATAALRIQR EISEN DLRQQQEAEPDPELAGVGVCRGTARQ EEEILAVSSEFD AEAATRSDRSARTIQKAVRRRLSSGNTTSKADGLPAME++GQP TLEEEAQGQPDAGKRGDGPGAVLVNR GSGDGS IPSQQAPVVAAESSSPVVRAGDEL SPSS A VDGTPSSTPASGADGL ARLSDADG+NN+ DVAESAFVEAGLPSTSLPSED AESETAD AAG +LSQTL H REG N QPEGASS SPLPSPTTP PEAAERGQQ+ DHQPRQ EGGGEAAVSLPPSS TACPPTLGPTVDV VG LPVDTDTSADAMMTTV GTHAGGGAESLGFSAVGLSPVPERQALVAVAASASEYGSED DFDALSSSPGGSSRGG SRGEEENAGVAARVATRSS VTTGEKVEEPTESRG+ERVAA GAA EKN AGDIEP LAAAEV TTKEVERGGTQ TEDGSDNSS+VSLSVSSGS
Sbjct: 1 MDVLLKICRDQGRANSLNPADFDSSISAIANLPVKQFMTAAKDGWGPYFRNLHSNMRKETTARSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VANDLHHMVRSXXXXXXXXXXXXXXXXXXXXXXDGLAASRARAAKRQAEEMVIRRMGVRLQALWQELKIPDPDRAYVTAAYLDAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSGPTSENVNRELTRQIRLLLEHRAATVKVLRCVNARESRLCEVEQALQAFQWHRGLDTDALGVVVSLAGLRDASLDVVRAVEEWRTNLWQPRAFCWRGVNYLEKMWQDTIFLRSPVGQSLLASVGLEAKDMTFVLYPSGNGGGAPSAIPGDSSTCGSELSDGERDTKGDVLRPPPAIVRLTPKAELVSAYRARYFEQSPVVGAGGRPGGESGDVGGERGRLKSTAAAATAAMEAVVVQEAALQRRVEAERVRLATKGCFVPLLRWLPGDSRNPAPKGKRRWSSSSPXXXXXXXXXXXP--GAESETHAAKDVVDSFAHNDGRSGVPAVRDVSVSAAIPPDPLTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------AEEESRSETDIARRSACTVGAEARAGENGCLKVVATSECGVGSAGIPVGGVSSGDDGDGDTDKPSIVPGELRQEGIVDEERSVAPSVCYDDDFEEDAEGYSLSDSETSGEGGSADFGECLNGSISSDDAKDARRDQGVAHTTEEEGAAISCGEGRQNPVVGGNNVLTEHQRQQQLVEERETVAATAALRIQR----------------------------------------------------------------------------------------------------------------REISENVDLRQQQEAEPDPELAGVGVCRGTARQGEEEILAVSSEFDSAEAATRSDRSARTIQKAVRRRLSSGNTTSKADGLPAMEIKGQPKTLEEEAQGQPDAGKRGDGPGAVLVNRCGSGDGSFIPSQQAPVVAAESSSPVVRAGDELDSPSSPAAVDGTPSSTPASGADGLDARLSDADGKNNRPDVAESAFVEAGLPSTSLPSEDSAESETADDAAGGDLSQTLQHPREGSNFQPEGASSWSPLPSPTTPRPEAAERGQQENDHQPRQVEGGGEAAVSLPPSSATACPPTLGPTVDVFVGLLPVDTDTSADAMMTTVGGTHAGGGAESLGFSAVGLSPVPERQALVAVAASASEYGSEDPDFDALSSSPGGSSRGGVSRGEEENAGVAARVATRSSVVTTGEKVEEPTESRGVERVAAPVAAAVAGAATEKNLAGDIEPVSLAAAEVATTKEVERGGTQCTEDGSDNSSIVSLSVSSGS 1246
BLAST of mRNA_E-siliculosus-1a_F_contig1067.478.1 vs. uniprot
Match: A0A835YQY4_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQY4_9STRA) HSP 1 Score: 120 bits (301), Expect = 2.490e-24 Identity = 102/330 (30.91%), Postives = 131/330 (39.70%), Query Frame = 1 Query: 931 RLQALWQELKIPDPDRAYVTAAYLDAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSGPTSENVNRELTRQIRLLLEHRAATVKVLRSVNARESRLCEVEQALQAFQ----WHRGLDTDALGVVVSLAGLRDASLDVIRAVEEWRTNLWQPRAFCWRGVNYLEKMSQDTIFLRSPVGKSLLASVGLEAKDMTFVLFPSGNGGGAPSAIPGDSSTCGSELSDGERDTEGDVLRPPPAIVRLTPKVELVSAYRARYFEQSPVVGAGGRPGRESRDVGGERGRLKSTAAAATAAMEAVVVQEAALQRRVEAERVRLATKGCFVPLLRWLPG 1908
RL ALW+ELKIP PDR YV Y AG +G E+ RQ+ LLL HRAATV LR++ ARE+RL +V A LA LR S+ V+RA+ WR LWQP F WRG +YL +M D +FL + L S L A D+ + GG + V ++S AR + GG P + A +EAV+V+E A+Q R E E+ R+ T GCF+PLLRWLPG
Sbjct: 95 RLHALWEELKIPAPDRDYVAGTYC-AGLRA---------------------------KAGVGLRAAAAEVDRQVDLLLAHRAATVAALRAIAARETRLADVRAQCAALPHAAAXXXXXXXXXXXXXXXLARLRVLSVAVVRAIVAWRALLWQPMPFMWRGASYLARMQADALFLCDAPVAATLGSAALSAADLCLLCPLRHTAGGRQDKLS---------------------------------SVNVLSDEDARRVRTAFWGSDGGVP--------------HAVHLEALRELEAVIVEETAVQARAEREQRRMLTGGCFIPLLRWLPG 349 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1067.478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1067.478.1 >prot_E-siliculosus-1a_F_contig1067.478.1 ID=prot_E-siliculosus-1a_F_contig1067.478.1|Name=mRNA_E-siliculosus-1a_F_contig1067.478.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1661bp MSYVERLREELMGSLGFEVESRSCLSGNRGSARERDRKARRRRSGGGAIAback to top mRNA from alignment at E-siliculosus-1a_F_contig1067:16447..23260+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1067.478.1 ID=mRNA_E-siliculosus-1a_F_contig1067.478.1|Name=mRNA_E-siliculosus-1a_F_contig1067.478.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6814bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1067:16447..23260+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1067:16447..23260+ >mRNA_E-siliculosus-1a_F_contig1067.478.1 ID=mRNA_E-siliculosus-1a_F_contig1067.478.1|Name=mRNA_E-siliculosus-1a_F_contig1067.478.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=9966bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1067:16447..23260+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |