Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 450 |
| Model size | 450 |
| Exons | 2 |
| Ec32 ortholog | Ec-01_005410.1 |
| Ec32 ortholog description | Hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927568.5749757-CDS-E-siliculosus-1a_F_contig1067:15169..15502 | 1622927568.5749757-CDS-E-siliculosus-1a_F_contig1067:15169..15502 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1067 15170..15502 - |
| 1696318589.7369561-CDS-E-siliculosus-1a_F_contig1067:15169..15502 | 1696318589.7369561-CDS-E-siliculosus-1a_F_contig1067:15169..15502 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1067 15170..15502 - |
| 1622927568.590932-CDS-E-siliculosus-1a_F_contig1067:16000..16117 | 1622927568.590932-CDS-E-siliculosus-1a_F_contig1067:16000..16117 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1067 16001..16117 - |
| 1696318589.7472954-CDS-E-siliculosus-1a_F_contig1067:16000..16117 | 1696318589.7472954-CDS-E-siliculosus-1a_F_contig1067:16000..16117 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1067 16001..16117 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1067.477.1 >prot_E-siliculosus-1a_F_contig1067.477.1 ID=prot_E-siliculosus-1a_F_contig1067.477.1|Name=mRNA_E-siliculosus-1a_F_contig1067.477.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=150bp
MGSAWSRKQATIHSSFQAAPLAVASWDLQHVKILHNRFRDDGYEFGIDRV
SLRDLISSALPLARGVTGDLWEIYVEHEQEMLYPLELFAAVALQCHGLSR
CGVSTIYSCPVFLCKNPSYFHAHFGPCRPEGRRLDRCISSKVSPGIRVYF back to topmRNA from alignment at E-siliculosus-1a_F_contig1067:15170..16117- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1067.477.1 ID=mRNA_E-siliculosus-1a_F_contig1067.477.1|Name=mRNA_E-siliculosus-1a_F_contig1067.477.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=948bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1067:15170..16117- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGGTCAGCTTGGTCAAGAAAGCAGGCAACCATCCATAGTTCCTTCCA
GGCCGCGCCTCTTGCTGTGGCCTCGTGGGACCTACAGCACGTCAAGATTC
TCCACAATCGATTCAGGGTAAGGAGCAAAGCAGTATGCAACCTGTTGACA
CAGCCAAGCAGTTCACAAAGTGGATAACACACCGTGCCTACAAGAAGGCA
AGAAAACAGCGATTTGTGCACAGTGATGAACTCTGTGCGTGAACATTATG
TTCGACAACACTTCAGTGCAGTAGGATGTACGAGCTTCGATGTCGTGCGA
ATTACGCATGGTCAGTACTTGTGGTCAGCATCACATCAAACACAATGGAT
TAGCCGGTGACGATGAATTGATGGTTACAGATGCAGATGCTCTCTGGTCG
AATGCCTGCATAGTACTGTGCCATGTAGTTGTTGCGCTTTGTTCGTGAGT
ATACTTGAGGAAAGGAAGGACGACTGAAACCTGCAGCGTGAATTCGGATC
GGATAGAACCTCGTCGGGTAGACTACGGTAGACTGCGAGCGACGGTTGAA
ATGGGTTACATGAATGAAGACCAACATAATATAACGCTACGGATGACAAT
GGCATGACACGGCAGGATGATGGGTACGAATTCGGCATAGACCGGGTGTC
GCTGCGAGATCTCATCAGCTCGGCGTTGCCACTCGCGCGAGGAGTGACGG
GTGACCTCTGGGAAATCTACGTAGAACACGAGCAGGAGATGCTCTACCCT
CTGGAACTGTTTGCCGCCGTTGCTCTCCAGTGCCATGGCTTGTCTAGGTG
TGGTGTATCTACAATTTACAGCTGCCCAGTTTTTTTGTGTAAGAATCCGA
GCTATTTCCATGCCCATTTTGGTCCCTGTCGCCCGGAAGGTCGGAGGCTC
GACCGGTGCATTTCCTCAAAAGTCTCCCCAGGGATCAGGGTTTATTTC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1067:15170..16117- >mRNA_E-siliculosus-1a_F_contig1067.477.1 ID=mRNA_E-siliculosus-1a_F_contig1067.477.1|Name=mRNA_E-siliculosus-1a_F_contig1067.477.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=900bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1067:15170..16117- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGGTCAGCTTGGTCAAGAAAGCAGGCAACCATCCATAGTTCCTTCCA
GGCCGCGCCTCTTGCTGTGGCCTCGTGGGACCTACAGCACGTCAAGATTC
TCCACAATCGATTCAGGATGGGGTCAGCTTGGTCAAGAAAGCAGGCAACC
ATCCATAGTTCCTTCCAGGCCGCGCCTCTTGCTGTGGCCTCGTGGGACCT
ACAGCACGTCAAGATTCTCCACAATCGATTCAGGGATGATGGGTACGAAT
TCGGCATAGACCGGGTGTCGCTGCGAGATCTCATCAGCTCGGCGTTGCCA
CTCGCGCGAGGAGTGACGGGTGACCTCTGGGAAATCTACGTAGAACACGA
GCAGGAGATGCTCTACCCTCTGGAACTGTTTGCCGCCGTTGCTCTCCAGT
GCCATGGCTTGTCTAGGTGTGGTGTATCTACAATTTACAGCTGCCCAGTT
TTTTTGTGTAAGAATCCGAGCTATTTCCATGCCCATTTTGGTCCCTGTCG
CCCGGAAGGTCGGAGGCTCGACCGGTGCATTTCCTCAAAAGTCTCCCCAG
GGATCAGGGTTTATTTCGATGATGGGTACGAATTCGGCATAGACCGGGTG
TCGCTGCGAGATCTCATCAGCTCGGCGTTGCCACTCGCGCGAGGAGTGAC
GGGTGACCTCTGGGAAATCTACGTAGAACACGAGCAGGAGATGCTCTACC
CTCTGGAACTGTTTGCCGCCGTTGCTCTCCAGTGCCATGGCTTGTCTAGG
TGTGGTGTATCTACAATTTACAGCTGCCCAGTTTTTTTGTGTAAGAATCC
GAGCTATTTCCATGCCCATTTTGGTCCCTGTCGCCCGGAAGGTCGGAGGC
TCGACCGGTGCATTTCCTCAAAAGTCTCCCCAGGGATCAGGGTTTATTTC back to top
|