mRNA_E-siliculosus-1a_F_contig1067.475.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1067.475.1 vs. uniprot
Match: D7FNH6_ECTSI (Major facilitator transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH6_ECTSI) HSP 1 Score: 531 bits (1369), Expect = 1.870e-185 Identity = 288/303 (95.05%), Postives = 291/303 (96.04%), Query Frame = 1 Query: 1 PPSLLSSHRTSSLLMQLAVVLACFSLSLNVFSVYYNYFDFRYHWSPLDISLYFSTFGILLALTSGLLIRFLVPKRLSVGRGVLLGLALQSSSTTLFGLASQGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQGAVQCLRNVSQGLAGVLYGQIFSLGVSSRVEKALGFVLPGLPLFCASGCGATALAIAWYALRKAGETGAADPKSTANPSDVEAEEGGMMASNTVDVTDSSTATPAEDSSSDGGRSGKEAPAANPTALMQAASRVIGLGDEEDTMSDMSEPLLPRGDRFDSRSSS 909 P S+L SSLLMQLAVVLACFSLSLNVFSVYYNYFDFRYHWSPLDISL+FSTFGILLALTSGLLIRFLVPKRLSVGRGVLLGLALQSSSTTLFGLASQGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQGAVQCLRNVSQGLAGVLYGQIFSLGVS+RVE ALGFVLPGLPLFCASGCGATAL IAWYALRKAGETGAADPKSTANPSDVEAEE GMMASNTVDVTDSSTATPAEDSS DGGRSGKEAPAANPTALMQ ASRV GLGDEEDTMSDMSEPLLPRGDRFDSRSSS Sbjct: 273 PFSVLKVFLESSLLMQLAVVLACFSLSLNVFSVYYNYFDFRYHWSPLDISLFFSTFGILLALTSGLLIRFLVPKRLSVGRGVLLGLALQSSSTTLFGLASQGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQGAVQCLRNVSQGLAGVLYGQIFSLGVSTRVENALGFVLPGLPLFCASGCGATALTIAWYALRKAGETGAADPKSTANPSDVEAEEDGMMASNTVDVTDSSTATPAEDSSGDGGRSGKEAPAANPTALMQPASRVTGLGDEEDTMSDMSEPLLPRGDRFDSRSSS 575
BLAST of mRNA_E-siliculosus-1a_F_contig1067.475.1 vs. uniprot
Match: D7FNH7_ECTSI (Tetracycline-efflux transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNH7_ECTSI) HSP 1 Score: 161 bits (407), Expect = 3.270e-41 Identity = 93/206 (45.15%), Postives = 129/206 (62.62%), Query Frame = 1 Query: 1 PPSLLSSHRTSSLLMQLAVVLACFSLSLNVFSVYYNYFDFRYHWSPLDISLYFSTFGILLALTSGLLIRFLVPKRLSVGRGVLLGLALQSSSTTLFGLASQGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQGAVQCLRNVSQGLAGVLYGQIFSLGVSSRVEKALGFVLPGLPLFCASGCGATALAIAWYALRKAGET 618 P S+L S L+++A F LSLNVF+ YNY D+R+ W+P +IS +F+T+ IL+AL G +IRF+VPKRL+ +G L G+++Q S + GL +GWM Y LV LQ ITEPC+Q +MA VG + QGSLQGAV LR V +G+A ++ Q+FS G S E+A P F A+ +LA+AW+ LRK +T Sbjct: 348 PLSVLKVFLESRALLRIACSYFLFVLSLNVFATGYNYVDYRFGWTPSEISYFFATYNILMALAGGWVIRFIVPKRLTEEKGALFGISVQVFSVMVSGLCFRGWMLYPALVFGALQNITEPCLQAIMATFVGPELQGSLQGAVMSLRVVGEGVAAPVFTQVFSAGASVGFEEA--------PFFLATAISLVSLAVAWWPLRKLDKT 545
BLAST of mRNA_E-siliculosus-1a_F_contig1067.475.1 vs. uniprot
Match: A0A6I1K2G3_9BACT (MFS transporter DHA1 family tetracycline resistance protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A6I1K2G3_9BACT) HSP 1 Score: 88.2 bits (217), Expect = 5.500e-16 Identity = 55/182 (30.22%), Postives = 96/182 (52.75%), Query Frame = 1 Query: 94 SVYYNYFDFRYHWSPLDISLYFSTFGILLALTSGLLIRFLVPKRLSVGRGVLLGLALQSSSTTLFGLASQGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQGAVQCLRNVSQGLAGVLYGQIFSLGVSSRVEKALGFVLPGLPLFCASGCGATALAIAWYALRKAGETGAADPKS 639 S + Y +RYHW+P + + G+ A+ G L R ++P RL R V +GL + ++ +GLA++GWM YV++ + I+ P +QG+++ VGAD QG++QG++ L +++ L L +F +S+ L PG F +S A+ +A + R+ T ++P S Sbjct: 241 STWVLYTSYRYHWTPGQTGMSLAMVGLTAAIVQGGLTRAIIP-RLGERRSVTVGLTISAAGLIAYGLATEGWMAYVIIAVASISGISGPSVQGLISRSVGADEQGAVQGSLNSLASIAGVLGPPLATGLFGFFISAGAPVKL----PGAAFFFSSALTVAAMLLAVRSFRRELPTAKSEPAS 417
BLAST of mRNA_E-siliculosus-1a_F_contig1067.475.1 vs. uniprot
Match: A0A2N5K755_9CHLR (Tetracycline resistance MFS efflux pump n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2N5K755_9CHLR) HSP 1 Score: 86.7 bits (213), Expect = 1.730e-15 Identity = 55/147 (37.41%), Postives = 84/147 (57.14%), Query Frame = 1 Query: 109 YFDFRYHWSPLDISLYFSTFGILLALTSGLLIRFLVPKRLSVGRGVLLGLALQSSSTTLFGLASQGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQGAVQCLRNVSQGLAGVLYGQIFSLGVSSRVEKALGFVLPGLPLF 549 Y +R+ WS L + FGIL A+ L+R L+P RL R +++GL L+G+A+QGWM Y V+V T L ++ +P QG+++N V AD QG++QGA+ L +++ +A V+ IFS ++ F LPG P F Sbjct: 240 YTTYRFAWSTWQQGLSLAMFGILAAVIQAGLLRVLMP-RLGERRALVIGLLSSLIGFVLYGMATQGWMMYFVMVGTALGFLAQPAAQGLISNAVAADEQGAVQGALASLLSLTGIVAPVIATGIFSYFTAADQP----FKLPGAPFF 381
BLAST of mRNA_E-siliculosus-1a_F_contig1067.475.1 vs. uniprot
Match: A0A7S1TPX7_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPX7_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 1.900e-15 Identity = 51/161 (31.68%), Postives = 91/161 (56.52%), Query Frame = 1 Query: 79 SLNVFSVYYNYFDFRYHWSPLDISLYFSTFGILLALTSGLLIRFLVPKRLSVGRGVLLGLALQSSSTTLFGLASQGWMCYVVLVATV-LQYITEPCIQGVMANHVGADRQGSLQGAVQCLRNVSQGLAGVLYGQIFSLGVSSRVEKALGFVLPGLPLFCAS 558 ++ VF V++ D+ Y W ++++++ + GIL+A + + LVPK S + VL+ +Q ++ + + LA GW Y++LV T + I P ++G++ + ++QGSLQGA+Q L ++ ++YG FS G S ++ LG GLPL A+ Sbjct: 258 TMAVFGVWFYILDYNYDWGVVEVTIFITVAGILIAAAQVVGTKHLVPKVFSPAQAVLVASMVQCAAFSAYALAPVGWSIYLILVLTAGVGSIGAPSLRGILTSMAPPEQQGSLQGALQGLSQLTNAFMALVYGGAFSAGTSPFWKEHLGGHFAGLPLLIAA 418
BLAST of mRNA_E-siliculosus-1a_F_contig1067.475.1 vs. uniprot
Match: A0A521ZT07_9BACT (MFS transporter (Fragment) n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A521ZT07_9BACT) HSP 1 Score: 76.3 bits (186), Expect = 4.270e-13 Identity = 49/151 (32.45%), Postives = 85/151 (56.29%), Query Frame = 1 Query: 109 YFDFRYHWSPLDISLYFSTFGILLALTSGLLIRFLVPKRLSVGRGVLLGLALQSSSTTLFGLASQGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQGAVQCLRNVSQGLAGVLYGQIFSLGVSSRVEKALGFV-LPGLPLFCAS 558 Y +RY W+P ++ L + G++ + G L R ++PK L R +++GL + T +GLA+QGWM YV+LV + I P +QG+++ V + QG++QGA+ L + LAG++ G + + G+ +A V +PG F ++ Sbjct: 6 YTSYRYGWTPKEVGLSLALVGVMAVIVQGGLARKIIPK-LGERRSIVIGLTNATFFLTTYGLATQGWMVYVLLVVGSIGGIAMPALQGLVSRSVPLNEQGAVQGALASLAS----LAGIV-GPLVATGLFGHFVRAEATVKIPGAAFFASA 150
BLAST of mRNA_E-siliculosus-1a_F_contig1067.475.1 vs. uniprot
Match: A0A535IJB1_9CHLR (TCR/Tet family MFS transporter n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535IJB1_9CHLR) HSP 1 Score: 78.2 bits (191), Expect = 9.130e-13 Identity = 51/170 (30.00%), Postives = 93/170 (54.71%), Query Frame = 1 Query: 43 MQLAVVLACFSLS-LNVFSVYYNYFDFRYHWSPLDISLYFSTFGILLALTSGLLIRFLVPKRLSVGRGVLLGLALQSSSTTLFGLASQGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQGAVQCLRNVSQGLAGVLYGQIFSLGVSSRVEKALGFVLPGLPLF 549 + L V+ C +L+ L + S + Y +R++W+ L+ L + G++ + G LIR L P RL R +L+ L L+GLA+QGWM YV++ T L ++++P QG+++N V + QG++QGA+ + +++ + ++ +FS + F +PG F Sbjct: 140 LNLTAVVVCNNLAGLALQSTWVLYNAYRFNWTALEQGLSLALVGVIAIVVQGWLIRVLQP-RLGERRLLLISLVSSVIGLVLYGLATQGWMMYVIMTVTALSFLSQPAAQGLISNAVKPNEQGAIQGALTSMISLTAIVGPIVGANVFSYFTAPEQP----FKVPGAAFF 304
BLAST of mRNA_E-siliculosus-1a_F_contig1067.475.1 vs. uniprot
Match: UPI00166C8BA5 (TCR/Tet family MFS transporter n=1 Tax=Undibacterium terreum TaxID=1224302 RepID=UPI00166C8BA5) HSP 1 Score: 78.6 bits (192), Expect = 1.020e-12 Identity = 58/165 (35.15%), Postives = 87/165 (52.73%), Query Frame = 1 Query: 115 DFRYHWSPLDISLYFSTFGILLALTSGLLIRFLVPKRLSVGRGVLLGLALQSSSTTLFGLASQGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQGAVQCLRNVSQGLAGVLYGQIFSLGVSSRVEKALGFVLPGLPLFCASGCGATALAIAWYALRKA 609 + R+ WSPL L G+ L G+ + L+ KR+ R VL+GLA +++ L+GLA+QGWM Y +++ VL + + P +Q + + V QG+ G++ L ++ +A L G F LG S K G VL G P F A+ AL IA+ LR A Sbjct: 247 ELRFGWSPLQNGLSLFVVGVSSVLMQGVFLGRLI-KRIGDARAVLIGLASSTTALLLYGLATQGWMMYALILCNVLGFASGPALQAIFSKAVEPQSQGAAMGSLTALASIMS-VAATLAGT-FLLGQVSHQAK--GSVLLGAPFFMAAVMQGLALTIAYRHLRAA 406
BLAST of mRNA_E-siliculosus-1a_F_contig1067.475.1 vs. uniprot
Match: UPI000AEEDF0E (TCR/Tet family MFS transporter n=1 Tax=Deinococcus misasensis TaxID=392413 RepID=UPI000AEEDF0E) HSP 1 Score: 77.8 bits (190), Expect = 1.810e-12 Identity = 48/146 (32.88%), Postives = 79/146 (54.11%), Query Frame = 1 Query: 121 RYHWSPLDISLYFSTFGILLALTSGLLIRFLVPKRLSVGRGVLLGLALQSSSTTLFGLASQGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQGAVQCLRNVSQGLAGVLYGQIFSLGVSSRVEKALGFVLPGLPLFCAS 558 RY W P + G++ A+ G+L+ L+PK L R +L+GL + + +GLA+QGWM Y ++V + I P IQG+++ HV QG++QGA+ L ++ +L IF+ + +KA +PG+P F A+ Sbjct: 233 RYGWGPQANGFSLTAVGVVGAVVQGVLVGLLIPK-LGEKRAILIGLFIGVAQFVAYGLATQGWMVYAIIVIGAIGGIAGPAIQGLVSRHVSEKEQGAIQGALSGLWSLVSIFGPILATSIFAYFTN---QKAGNPYIPGMPFFVAA 374
BLAST of mRNA_E-siliculosus-1a_F_contig1067.475.1 vs. uniprot
Match: A0A4P7JA95_9RHOB (MFS transporter n=1 Tax=Boseongicola sp. CCM32 TaxID=2552942 RepID=A0A4P7JA95_9RHOB) HSP 1 Score: 76.3 bits (186), Expect = 6.340e-12 Identity = 60/192 (31.25%), Postives = 95/192 (49.48%), Query Frame = 1 Query: 49 LAVVLACFSLSLNVFSVYYNYF-DFRYHWSPLDISLYFSTFGILLALTSGLLIRFLVPKRLSVGRGVLLGLALQSSSTTLFGLASQGWMCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQGAVQCLRNVSQGLAGVLYGQIFSLGVSSRVEKALGFVLPGLPLFCASGCGATALAIAWYALRKAGETG 621 L +V+ + +S V+ V + Y+ + WS I L + +G+ +AL GLLIR ++P L R V GL L + +GLAS GWM +V+L + L I P +Q +M+ G D+QG LQG + L +S ++ ++ Q F + + AL PG P ++ I + R+AG G Sbjct: 218 LLIVMFSYQISNFVYPVIWAYYTQAAFGWSTGQIGLSLAGYGLSVALVQGLLIRVILPV-LGESRAVFWGLLLNMACLVGYGLASAGWMIWVLLPISALGAIVAPAMQALMSRRAGPDQQGELQGVLASLGALSMIISPLVMTQAFFWFTRAGADPAL----PGAPFLLSAVLMLAGFTIFAFGSRRAGADG 404 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1067.475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1067.475.1 >prot_E-siliculosus-1a_F_contig1067.475.1 ID=prot_E-siliculosus-1a_F_contig1067.475.1|Name=mRNA_E-siliculosus-1a_F_contig1067.475.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=304bp PPSLLSSHRTSSLLMQLAVVLACFSLSLNVFSVYYNYFDFRYHWSPLDISback to top mRNA from alignment at E-siliculosus-1a_F_contig1067:145..2128+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1067.475.1 ID=mRNA_E-siliculosus-1a_F_contig1067.475.1|Name=mRNA_E-siliculosus-1a_F_contig1067.475.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1984bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1067:145..2128+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1067:145..2128+ >mRNA_E-siliculosus-1a_F_contig1067.475.1 ID=mRNA_E-siliculosus-1a_F_contig1067.475.1|Name=mRNA_E-siliculosus-1a_F_contig1067.475.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1824bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1067:145..2128+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |