mRNA_E-siliculosus-1a_F_contig10659.467.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10659.467.1 vs. uniprot
Match: D8LPK9_ECTSI (EsV-1-147 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPK9_ECTSI) HSP 1 Score: 372 bits (954), Expect = 7.600e-123 Identity = 196/272 (72.06%), Postives = 220/272 (80.88%), Query Frame = 2 Query: 29 GKGSRGSSTRKIVNDIFRILVAQEADLIKVQIEVTVEMGDFTGHDHVFEIVIPNDTEKSVRSDCDELVKIDGIFLDEKRTLFQNNMISAINRRYGAESLVGVEGQEMESLHAFGKCALDILRLTYIILTDLDSDSPWVTTPFHVNKLKYSSFVDMRESEYSVQRTPIDYFAEYMEYLA-----WGGSVLTKTLNPVSSELMADILRLFFKFSSEILGSETRKLAKTVHEASEAKGLLFNPRDFLERRNQPHTIIMERIQTKYMNDWSSSDFD 829
G+ G ++IVNDIFR+LVAQEAD IKVQIEVTV+MGDFTGHDHVFEIVIPN + VRSDCDELV +DGIFLD KRTLFQ NMISAI+RRY AE+LVGVEGQE E+LHAFGKCALDILRLTYIILTDLDSDSPWVTTP V++LK++ FV+MR++ VQRTPIDYF EYMEYLA G NPVSSELMA+ILRLF FSSE LG ET KLAKTVH+ASEAKGLLF P D L R+ PH +MER+QT+YM DWSS DF+
Sbjct: 172 GERVEGIFYQEIVNDIFRVLVAQEADDIKVQIEVTVQMGDFTGHDHVFEIVIPNKLMR-VRSDCDELVNVDGIFLDTKRTLFQKNMISAIHRRYMAEALVGVEGQEFEALHAFGKCALDILRLTYIILTDLDSDSPWVTTPIDVHRLKWNLFVEMRKTADFVQRTPIDYFVEYMEYLAPCIDRSGVGAFRLERNPVSSELMAEILRLFSNFSSEFLGRETAKLAKTVHDASEAKGLLFKPVDLLVRQIPPHKRMMERMQTRYMEDWSSRDFE 442
BLAST of mRNA_E-siliculosus-1a_F_contig10659.467.1 vs. uniprot
Match: Q8QND5_ESV1K (EsV-1-147 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QND5_ESV1K) HSP 1 Score: 201 bits (511), Expect = 3.810e-55 Identity = 121/274 (44.16%), Postives = 166/274 (60.58%), Query Frame = 2 Query: 56 RKIVNDIFRILVAQEADLIKVQIEVTVEMGDFTGHDHVFEIVIPNDTEKSVRSDCDELVKIDGIFLDEKRTLFQNNMISAINRRYGAESLVGVEGQEMESLHAFGKCALDILRLTYIILTDLDSDSPWVTTPFHVNKLKYSSFVDMRESEYSVQRTPIDYFAEYMEYLA-------------WGGSVLTKTLNPVSSELMADILRLFFKFSSEILGSETRKLAKTVHEASEAKGLLFNPRDFLERRNQPHTIIM---ERIQTKYMNDWSSSDFD 829
++IV++IF I VA E K+Q+EV +MGDF GHDHV EI+ + T+ R DC +LVK++GIF+D K+ LF NM+S +R + L + GQE ES HAFGKCALD+LRLTYIILTDLDS SPWVTTP + + V++ S TPI YF YM ++A + ++NP +S LM +ILRLF + SS L ET KL+K + E SE++ LF RD R + +T+++ +RI+ K N+W+ DFD
Sbjct: 278 QEIVDEIFLIRVAHENINTKIQVEVRGQMGDFVGHDHVLEIIF-DQTKLESRIDCGDLVKVNGIFVDSKKNLFHMNMMSGFSRLTLGKELSDIPGQESESHHAFGKCALDVLRLTYIILTDLDSASPWVTTPVYDRAIS----VELPISFKGTAMTPISYFIVYMAFMAPCVDRSGVGRFQLHDDVTVEGSVNPRASVLMGEILRLFSELSSTTLKEETAKLSKIIQEGSESRTQLF--RD----RGRDNTMLINKADRIKQKQTNEWALRDFD 540
BLAST of mRNA_E-siliculosus-1a_F_contig10659.467.1 vs. uniprot
Match: A0A6H5JW74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW74_9PHAE) HSP 1 Score: 120 bits (301), Expect = 2.540e-26 Identity = 68/174 (39.08%), Postives = 104/174 (59.77%), Query Frame = 2 Query: 59 KIVNDIFRILVAQEADLIKVQIEVTVEMGDFTGHDHVFEIVIPNDTEKSVRSDCDELVKIDGIFLDEKRTLFQNNMISAINRRYGAESLVGVEGQEMESLHAFGKCALDILRLTYIILTDLDSDSPWVTTPFH---VNKLKYSSFVDMRESEYSV---QRTPIDYFAEYMEYLA 562
++V D F +++ E DL+KVQ+EV ++G G DHVFE++ P + S C+ + I G+F+ K+ LF NM S I R + + + HA GKCA D+LRLTYIILTDLD++ WV TP + V +L + +++ Y+ ++TPI+YFA+YM+Y+A
Sbjct: 210 EVVGDHFLLVIVDEVDLLKVQVEVRAKLGSVVGVDHVFELIFPVEDWLS-DGRCEPMEHIGGLFVPPKKELFFQNMTSGIERARLSRHATWLA----DKYHAVGKCAQDVLRLTYIILTDLDAEKSWVNTPAYDDVVAQLPRTHELNLAAGRYAWAFHKQTPIEYFAQYMKYMA 378 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10659.467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10659.467.1 >prot_E-siliculosus-1a_F_contig10659.467.1 ID=prot_E-siliculosus-1a_F_contig10659.467.1|Name=mRNA_E-siliculosus-1a_F_contig10659.467.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=257bp MGDFTGHDHVFEIVIPNDTEKSVRSDCDELVKIDGIFLDEKRTLFQNNMIback to top mRNA from alignment at E-siliculosus-1a_F_contig10659:264..1297+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10659.467.1 ID=mRNA_E-siliculosus-1a_F_contig10659.467.1|Name=mRNA_E-siliculosus-1a_F_contig10659.467.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1034bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10659:264..1297+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10659:264..1297+ >mRNA_E-siliculosus-1a_F_contig10659.467.1 ID=mRNA_E-siliculosus-1a_F_contig10659.467.1|Name=mRNA_E-siliculosus-1a_F_contig10659.467.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1542bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10659:264..1297+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |